RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 HDGFL1Q5TGJ6 251 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 STRN4Q9NRL3 753 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 KIF1BPQ96EK5 621 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 ATP11AP98196 1134 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 RNF168Q8IYW5 571 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-201ENST00000328333 SETDB1Q15047 1291 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 CCDC97Q96F63 343 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-201ENST00000328333 VCX3BQ9H321 246 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 AKAP2Q9Y2D5 859 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 HMOX1P09601 288 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 ARHGAP25P42331 645 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 NBPF11Q86T75 865 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 RNF41Q9H4P4 317 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-201ENST00000328333 LRSAM1Q6UWE0 723 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 FAM200AQ8TCP9 573 aa16.37■□□□□ 0.21
COL7A1-201ENST00000328333 CNNM3Q8NE01 707 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 TSNAXIP1Q2TAA8 658 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 HDXQ7Z353 690 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 FAM114A2Q9NRY5 505 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 CYLC1P35663 651 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-201ENST00000328333 TERF1P54274 439 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 EHMT1Q9H9B1 1298 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 CACNA2D3Q8IZS8 1091 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 GABPB1Q06547 395 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-201ENST00000328333 CCDC129Q6ZRS4 1044 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 RSPH14Q9UHP6 348 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 GNG11P61952 73 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 CWC27Q6UX04 472 aaKnown RBP16.36■□□□□ 0.21
COL7A1-201ENST00000328333 TMC6Q7Z403 805 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 NUP133Q8WUM0 1156 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 CTNNBL1Q8WYA6 563 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-201ENST00000328333 USP25Q9UHP3 1055 aa16.36■□□□□ 0.21
COL7A1-201ENST00000328333 SLU7O95391 586 aaKnown RBP16.35■□□□□ 0.21
COL7A1-201ENST00000328333 BMP2KLQ5H9B9 411 aa16.35■□□□□ 0.21
COL7A1-201ENST00000328333 LMBR1Q8WVP7 490 aa16.35■□□□□ 0.21
COL7A1-201ENST00000328333 KIAA1524Q8TCG1 905 aa16.35■□□□□ 0.21
COL7A1-201ENST00000328333 MATR3P43243 847 aaKnown RBP eCLIP16.35■□□□□ 0.21
COL7A1-201ENST00000328333 CEP57Q86XR8 500 aa16.35■□□□□ 0.21
COL7A1-201ENST00000328333 RAB3IL1Q8TBN0 382 aa16.35■□□□□ 0.21
COL7A1-201ENST00000328333 PABPN1LA6NDY0 278 aaKnown RBP16.35■□□□□ 0.21
COL7A1-201ENST00000328333 SETD1BQ9UPS6 1966 aaKnown RBP16.35■□□□□ 0.21
COL7A1-201ENST00000328333 SLC4A2P04920 1241 aa16.35■□□□□ 0.21
COL7A1-201ENST00000328333 MPHOSPH8Q99549 860 aa16.35■□□□□ 0.21
COL7A1-201ENST00000328333 SRGAP3O43295 1099 aa16.35■□□□□ 0.21
COL7A1-201ENST00000328333 TBC1D5Q92609 795 aa16.35■□□□□ 0.21
COL7A1-201ENST00000328333 SSBP05455 408 aaKnown RBP eCLIP16.34■□□□□ 0.21
COL7A1-201ENST00000328333 TDRD12Q587J7 1177 aaKnown RBP16.34■□□□□ 0.21
COL7A1-201ENST00000328333 LMNTD2Q8IXW0 634 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 GAPVD1Q14C86 1478 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 STX6O43752 255 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 KRT86O43790 486 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 ZNF76P36508 570 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 FAM76AQ8TAV0 307 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 CCDC160A6NGH7 325 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 RALGAPBQ86X10 1494 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 C10orf67Q8IYJ2 551 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 AIDAQ96BJ3 306 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 ATP2A2P16615 1042 aaKnown RBP16.34■□□□□ 0.21
COL7A1-201ENST00000328333 MYH10P35580 1976 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 GOLGA4Q13439 2230 aaKnown RBP16.34■□□□□ 0.21
COL7A1-201ENST00000328333 ZKSCAN5Q9Y2L8 839 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 PRKAR2BP31323 418 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 GBP1P32455 592 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 STMN2Q93045 179 aa16.34■□□□□ 0.21
COL7A1-201ENST00000328333 VAV2P52735 878 aa16.33■□□□□ 0.21
COL7A1-201ENST00000328333 CROCCP2Q86T23 111 aa16.33■□□□□ 0.21
COL7A1-201ENST00000328333 KCNG4Q8TDN1 519 aa16.33■□□□□ 0.21
COL7A1-201ENST00000328333 PIBF1Q8WXW3 757 aa16.33■□□□□ 0.2
COL7A1-201ENST00000328333 CAMSAP2Q08AD1 1489 aa16.33■□□□□ 0.2
COL7A1-201ENST00000328333 KRT83P78385 493 aa16.33■□□□□ 0.2
COL7A1-201ENST00000328333 CLUL1Q15846 466 aa16.33■□□□□ 0.2
COL7A1-201ENST00000328333 SYTL4Q96C24 671 aaPredicted RBP16.33■□□□□ 0.2
COL7A1-201ENST00000328333 VCXQ9H320 206 aa16.33■□□□□ 0.2
COL7A1-201ENST00000328333 TCP11L1Q9NUJ3 509 aa16.33■□□□□ 0.2
COL7A1-201ENST00000328333 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.33■□□□□ 0.2
COL7A1-201ENST00000328333 KIF14Q15058 1648 aa16.33■□□□□ 0.2
COL7A1-201ENST00000328333 ZSCAN23Q3MJ62 389 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 CCDC14Q49A88 953 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 PPFIBP2Q8ND30 876 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 CCDC114Q96M63 670 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 KLHL10Q6JEL2 608 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 MACROD2A1Z1Q3 448 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 NOLC1Q14978 699 aaKnown RBP eCLIP16.32■□□□□ 0.2
COL7A1-201ENST00000328333 MXRA7P84157 204 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 CCDC96Q2M329 555 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 CALML4Q96GE6 196 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 CNGA1P29973 690 aa16.32■□□□□ 0.2
COL7A1-201ENST00000328333 C11orf95C9JLR9 678 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-201ENST00000328333 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.31■□□□□ 0.2
COL7A1-201ENST00000328333 CCDC38Q502W7 563 aa16.31■□□□□ 0.2
COL7A1-201ENST00000328333 C9orf84Q5VXU9 1444 aa16.31■□□□□ 0.2
COL7A1-201ENST00000328333 EXOSC9Q06265 439 aaKnown RBP16.31■□□□□ 0.2
COL7A1-201ENST00000328333 CWC25Q9NXE8 425 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-201ENST00000328333 FCHSD2O94868 740 aa16.31■□□□□ 0.2
COL7A1-201ENST00000328333 ZBTB17Q13105 803 aa16.31■□□□□ 0.2
COL7A1-201ENST00000328333 MAP7D1Q3KQU3 841 aa16.31■□□□□ 0.2
COL7A1-201ENST00000328333 CCDC102BQ68D86 513 aa16.31■□□□□ 0.2
COL7A1-201ENST00000328333 SSX2IPQ9Y2D8 614 aa16.31■□□□□ 0.2
COL7A1-201ENST00000328333 TRIM7Q9C029 511 aa16.31■□□□□ 0.2
COL7A1-201ENST00000328333 SYNJ2O15056 1496 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms