RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 CHMP3Q9Y3E7 222 aa32.95■■■□□ 2.87
CBX4-201ENST00000269397 LETM1O95202 739 aaPredicted RBP32.95■■■□□ 2.86
CBX4-201ENST00000269397 PTPRUQ92729 1446 aa32.94■■■□□ 2.86
CBX4-201ENST00000269397 NECAB1Q8N987 351 aa32.94■■■□□ 2.86
CBX4-201ENST00000269397 MTMR6Q9Y217 621 aa32.94■■■□□ 2.86
CBX4-201ENST00000269397 PDRG1Q9NUG6 133 aa32.93■■■□□ 2.86
CBX4-201ENST00000269397 AMOTL2Q9Y2J4 779 aa32.93■■■□□ 2.86
CBX4-201ENST00000269397 ATP6V1DQ9Y5K8 247 aa32.93■■■□□ 2.86
CBX4-201ENST00000269397 PXDNLA1KZ92 1463 aa32.92■■■□□ 2.86
CBX4-201ENST00000269397 FUCA2Q9BTY2 467 aa32.92■■■□□ 2.86
CBX4-201ENST00000269397 LRRC37A3O60309 1634 aa32.92■■■□□ 2.86
CBX4-201ENST00000269397 SPC24Q8NBT2 197 aa32.92■■■□□ 2.86
CBX4-201ENST00000269397 KCNQ3O43525 872 aa32.91■■■□□ 2.86
CBX4-201ENST00000269397 BEND3Q5T5X7 828 aa32.91■■■□□ 2.86
CBX4-201ENST00000269397 MTERF4Q7Z6M4 381 aaKnown RBP32.91■■■□□ 2.86
CBX4-201ENST00000269397 CACNA1FO60840 1977 aa32.91■■■□□ 2.86
CBX4-201ENST00000269397 DNAAF4Q8WXU2 420 aa32.9■■■□□ 2.86
CBX4-201ENST00000269397 COL9A3Q14050 684 aaPredicted RBP32.9■■■□□ 2.86
CBX4-201ENST00000269397 PRDM10Q9NQV6 1147 aa32.9■■■□□ 2.86
CBX4-201ENST00000269397 ST3GAL1Q11201 340 aa32.89■■■□□ 2.86
CBX4-201ENST00000269397 LGR6Q9HBX8 967 aa32.89■■■□□ 2.86
CBX4-201ENST00000269397 PA2G4Q9UQ80 394 aaKnown RBP32.89■■■□□ 2.86
CBX4-201ENST00000269397 FERMT3Q86UX7 667 aa32.88■■■□□ 2.85
CBX4-201ENST00000269397 GLRX3O76003 335 aaKnown RBP32.88■■■□□ 2.85
CBX4-201ENST00000269397 ME3Q16798 604 aa32.88■■■□□ 2.85
CBX4-201ENST00000269397 FAM173BQ6P4H8 233 aa32.88■■■□□ 2.85
CBX4-201ENST00000269397 ZNF710Q8N1W2 664 aa32.88■■■□□ 2.85
CBX4-201ENST00000269397 RGPD8O14715 1765 aaPredicted RBP32.87■■■□□ 2.85
CBX4-201ENST00000269397 PLPPR3Q6T4P5 718 aa32.87■■■□□ 2.85
CBX4-201ENST00000269397 C14orf37Q86TY3 774 aa32.87■■■□□ 2.85
CBX4-201ENST00000269397 PRIMPOLQ96LW4 560 aa32.86■■■□□ 2.85
CBX4-201ENST00000269397 CYP46A1Q9Y6A2 500 aa32.86■■■□□ 2.85
CBX4-201ENST00000269397 PYCARDQ9ULZ3 195 aa32.86■■■□□ 2.85
CBX4-201ENST00000269397 KCNF1Q9H3M0 494 aa32.85■■■□□ 2.85
CBX4-201ENST00000269397 CAMK4Q16566 473 aa32.85■■■□□ 2.85
CBX4-201ENST00000269397 VPS53Q5VIR6 699 aa32.85■■■□□ 2.85
CBX4-201ENST00000269397 CLASRPQ8N2M8 674 aaKnown RBP32.85■■■□□ 2.85
CBX4-201ENST00000269397 EIF4A1P60842 406 aaKnown RBP32.85■■■□□ 2.85
CBX4-201ENST00000269397 DIP2BQ9P265 1576 aa32.84■■■□□ 2.85
CBX4-201ENST00000269397 PIK3C2AO00443 1686 aa32.84■■■□□ 2.85
CBX4-201ENST00000269397 TCEANC2Q96MN5 208 aa32.84■■■□□ 2.85
CBX4-201ENST00000269397 UBR1Q8IWV7 1749 aa32.84■■■□□ 2.85
CBX4-201ENST00000269397 ABTB2Q8N961 1025 aa32.84■■■□□ 2.85
CBX4-201ENST00000269397 RUFY2Q8WXA3 655 aa32.84■■■□□ 2.85
CBX4-201ENST00000269397 ZSWIM6Q9HCJ5 1215 aa32.84■■■□□ 2.85
CBX4-201ENST00000269397 SPTLC3Q9NUV7 552 aa32.83■■■□□ 2.85
CBX4-201ENST00000269397 NWD1Q149M9 1564 aa32.83■■■□□ 2.85
CBX4-201ENST00000269397 N4BP2Q86UW6 1770 aaPredicted RBP32.83■■■□□ 2.85
CBX4-201ENST00000269397 KCNJ4P48050 445 aa32.82■■■□□ 2.84
CBX4-201ENST00000269397 HMGN5P82970 282 aaKnown RBP32.82■■■□□ 2.84
CBX4-201ENST00000269397 HSP90AB4PQ58FF6 505 aa32.82■■■□□ 2.84
CBX4-201ENST00000269397 TPCN1Q9ULQ1 816 aa32.82■■■□□ 2.84
CBX4-201ENST00000269397 TTC41PQ6P2S7 1318 aa32.82■■■□□ 2.84
CBX4-201ENST00000269397 ECHDC1Q9NTX5 307 aa32.82■■■□□ 2.84
CBX4-201ENST00000269397 PLEKHG1Q9ULL1 1385 aa32.81■■■□□ 2.84
CBX4-201ENST00000269397 FAM227BQ96M60 508 aa32.81■■■□□ 2.84
CBX4-201ENST00000269397 BABAM1Q9NWV8 329 aa32.81■■■□□ 2.84
CBX4-201ENST00000269397 TTC6Q86TZ1 520 aa32.81■■■□□ 2.84
CBX4-201ENST00000269397 IFIT2P09913 472 aaKnown RBP32.8■■■□□ 2.84
CBX4-201ENST00000269397 CEBPAP49715 358 aaPredicted RBP32.8■■■□□ 2.84
CBX4-201ENST00000269397 LARP1BQ659C4 914 aaKnown RBP32.8■■■□□ 2.84
CBX4-201ENST00000269397 CDC37L1Q7L3B6 337 aa32.8■■■□□ 2.84
CBX4-201ENST00000269397 CCDC94Q9BW85 323 aaPredicted RBP32.8■■■□□ 2.84
CBX4-201ENST00000269397 PRDM4Q9UKN5 801 aa32.8■■■□□ 2.84
CBX4-201ENST00000269397 RBM8AQ9Y5S9 174 aaKnown RBP32.79■■■□□ 2.84
CBX4-201ENST00000269397 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP32.79■■■□□ 2.84
CBX4-201ENST00000269397 NECTIN1Q15223 517 aa32.79■■■□□ 2.84
CBX4-201ENST00000269397 KIAA1524Q8TCG1 905 aa32.79■■■□□ 2.84
CBX4-201ENST00000269397 ZSCAN31Q96LW9 406 aaPredicted RBP32.79■■■□□ 2.84
CBX4-201ENST00000269397 SH2B1Q9NRF2 756 aaPredicted RBP32.79■■■□□ 2.84
CBX4-201ENST00000269397 USP42Q9H9J4 1324 aaKnown RBP32.78■■■□□ 2.84
CBX4-201ENST00000269397 LIG1P18858 919 aa32.78■■■□□ 2.84
CBX4-201ENST00000269397 AACSQ86V21 672 aa32.78■■■□□ 2.84
CBX4-201ENST00000269397 C9orf78Q9NZ63 289 aaPredicted RBP32.78■■■□□ 2.84
CBX4-201ENST00000269397 KIF3AQ9Y496 699 aa32.78■■■□□ 2.84
CBX4-201ENST00000269397 ADCY9O60503 1353 aa32.78■■■□□ 2.84
CBX4-201ENST00000269397 CCDC192P0DO97 292 aa32.78■■■□□ 2.84
CBX4-201ENST00000269397 SETD1BQ9UPS6 1966 aaKnown RBP32.77■■■□□ 2.84
CBX4-201ENST00000269397 CCDC171Q6TFL3 1326 aa32.77■■■□□ 2.84
CBX4-201ENST00000269397 ZKSCAN1P17029 563 aaPredicted RBP32.77■■■□□ 2.84
CBX4-201ENST00000269397 CREB3L3Q68CJ9 461 aa32.77■■■□□ 2.84
CBX4-201ENST00000269397 CKAP2LQ8IYA6 745 aa32.77■■■□□ 2.84
CBX4-201ENST00000269397 CWF19L2Q2TBE0 894 aaKnown RBP32.76■■■□□ 2.84
CBX4-201ENST00000269397 GTF2F1P35269 517 aaKnown RBP eCLIP32.75■■■□□ 2.837e-10■■■■■ 142.2
CBX4-201ENST00000269397 LUZP1Q86V48 1076 aa32.75■■■□□ 2.83
CBX4-201ENST00000269397 TM6SF1Q9BZW5 370 aa32.75■■■□□ 2.83
CBX4-201ENST00000269397 MAP3K2Q9Y2U5 619 aa32.75■■■□□ 2.83
CBX4-201ENST00000269397 TAF6LQ9Y6J9 622 aa32.75■■■□□ 2.83
CBX4-201ENST00000269397 TFIP11Q9UBB9 837 aaKnown RBP32.74■■■□□ 2.83
CBX4-201ENST00000269397 NMIQ13287 307 aaPredicted RBP32.74■■■□□ 2.83
CBX4-201ENST00000269397 CCDC8Q9H0W5 538 aaPredicted RBP32.74■■■□□ 2.83
CBX4-201ENST00000269397 BCL2L12Q9HB09 334 aa32.74■■■□□ 2.83
CBX4-201ENST00000269397 PROSER3Q2NL68 480 aa32.74■■■□□ 2.83
CBX4-201ENST00000269397 NBPF6Q5VWK0 638 aa32.74■■■□□ 2.83
CBX4-201ENST00000269397 NBPF4Q96M43 638 aa32.74■■■□□ 2.83
CBX4-201ENST00000269397 MPRIPQ6WCQ1 1025 aa32.73■■■□□ 2.83
CBX4-201ENST00000269397 EID1Q9Y6B2 187 aa32.73■■■□□ 2.83
CBX4-201ENST00000269397 PTGS1P23219 599 aa32.73■■■□□ 2.83
CBX4-201ENST00000269397 KRT85P78386 507 aa32.73■■■□□ 2.83
CBX4-201ENST00000269397 GPATCH3Q96I76 525 aa32.73■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms