RNA–Protein interactions for RNA: ENSMUST00000043767.8

Upf3a-201, Transcript of MCG3697, isoform CRA_c, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3a, Length 2,057 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3a-201ENSMUST00000043767 Nphp1Q9QY53 687 aa28.32■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Brd1E9PZ26 1189 aaKnown RBP28.31■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Mum1Q6DID5 682 aa28.31■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Prr5lA2AVJ5 370 aa28.31■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Smarcc1P97496 1104 aa28.31■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Slc4a10Q5DTL9 1118 aa28.31■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Ly75Q60767 1723 aa28.31■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Tceal9Q9DD24 104 aa28.31■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Ric1Q69ZJ7 1422 aa28.3■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Kiaa0319Q5SZV5 1081 aa28.3■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Gnl3lQ6PGG6 577 aaKnown RBP28.3■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Rapgef4Q9EQZ6 1011 aa28.3■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Myd88P22366 296 aa28.3■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Strn4P58404 760 aa28.3■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Irx3P81067 507 aa28.3■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Ssc5dQ8BV57 1371 aa28.29■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Gm13023A2A8N2 498 aa28.29■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Ppp2r3aB2RXC8 1150 aa28.28■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Cwc25Q9DBF7 416 aa28.28■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Atg4a-psA0A0G2JFS9 396 aa28.27■■■□□ 2.12
Upf3a-201ENSMUST00000043767 4930567H17RikQ3V0K5 233 aa28.27■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Atg4aQ8C9S8 396 aa28.27■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Nlrp3Q8R4B8 1033 aa28.27■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Nlrp9bQ66X22 1003 aa28.27■■■□□ 2.12
Upf3a-201ENSMUST00000043767 AbraQ8BUZ1 375 aa28.27■■■□□ 2.12
Upf3a-201ENSMUST00000043767 ScaperF8VQ70 1398 aaKnown RBP28.26■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Aldh8a1Q8BH00 487 aa28.26■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Kif18aQ91WD7 886 aa28.25■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Stard3nlQ9DCI3 235 aa28.25■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Fbln2P37889 1221 aa28.25■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Pa2g4P50580 394 aaKnown RBP28.25■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Ccdc146E9Q9F7 977 aa28.24■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Trip6Q9Z1Y4 480 aa28.24■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Mrc1Q61830 1456 aa28.24■■■□□ 2.11
Upf3a-201ENSMUST00000043767 DaxxO35613 739 aa28.23■■■□□ 2.11
Upf3a-201ENSMUST00000043767 GpkowQ56A08 488 aa28.23■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Jarid2Q62315 1234 aa28.23■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Ehd4Q9EQP2 541 aa28.23■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Gtf3c3Q3TMP1 882 aa28.23■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Esco1Q69Z69 843 aa28.23■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Ipo8Q7TMY7 1010 aa28.23■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Cetn4Q8K4K1 168 aa28.23■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Mcmdc2E9Q956 681 aa28.22■■■□□ 2.11
Upf3a-201ENSMUST00000043767 InsrrQ9WTL4 1300 aa28.22■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Igflr1Q3U4N7 345 aa28.22■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Gnat3Q3V3I2 354 aa28.21■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Adora1Q60612 326 aa28.21■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Slf2Q6P9P0 1278 aa28.2■■■□□ 2.11
Upf3a-201ENSMUST00000043767 Fam213aQ9CYH2 218 aa28.2■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Phlpp2Q8BXA7 1320 aa28.19■■■□□ 2.1
Upf3a-201ENSMUST00000043767 CoblQ5NBX1 1337 aaKnown RBP28.19■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Cgnl1Q6AW69 1298 aa28.19■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Gcc1Q9D4H2 778 aa28.19■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Cog6Q8R3I3 657 aa28.18■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Cyp19a1P28649 503 aa28.17■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Ttc19Q8CC21 365 aa28.17■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Nsfl1cQ9CZ44 370 aaKnown RBP28.17■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Kiaa0232Q80U59 1396 aaKnown RBP28.17■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Pdlim2Q8R1G6 349 aa28.17■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Trim30dE9PWL0 497 aa28.16■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Map7O88735 730 aa28.16■■■□□ 2.1
Upf3a-201ENSMUST00000043767 MpndQ3TV65 487 aa28.15■■■□□ 2.1
Upf3a-201ENSMUST00000043767 C4bP01029 1738 aa28.15■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Wdr63B2RY71 923 aa28.15■■■□□ 2.1
Upf3a-201ENSMUST00000043767 VgfQ0VGU4 617 aa28.15■■■□□ 2.1
Upf3a-201ENSMUST00000043767 4933416C03RikQ3V063 378 aa28.15■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Ankrd13dQ6PD24 605 aa28.15■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Clca2Q8BG22 942 aa28.15■■■□□ 2.1
Upf3a-201ENSMUST00000043767 GptQ8QZR5 496 aa28.15■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Fkbp1aP26883 108 aaKnown RBP28.14■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Ak7Q9D2H2 614 aa28.14■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Arap2Q8BZ05 1703 aa28.14■■■□□ 2.1
Upf3a-201ENSMUST00000043767 Lrrc43Q3V0L5 667 aa28.13■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Ccdc183A2AJB1 534 aa28.12■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Atp1b3P97370 278 aa28.12■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Vars2Q3U2A8 1060 aa28.12■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Cyp46a1Q9WVK8 500 aa28.12■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Snapc4Q8BP86 1333 aa28.12■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Ets1P27577 440 aa28.12■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Snai1Q02085 264 aa28.12■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Zbtb3Q91X45 518 aa28.12■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Prr29B1ARI9 187 aa28.11■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Ifit1bl2Q3U687 466 aa28.11■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Ppp1r9bQ6R891 817 aaKnown RBP28.11■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Abcc4E9Q236 1325 aa28.1■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Cyp2c23E9Q5K4 494 aa28.1■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Dctn1O08788 1281 aa28.1■■■□□ 2.09
Upf3a-201ENSMUST00000043767 BcanQ61361 883 aa28.1■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Edc3Q8K2D3 508 aaKnown RBP28.1■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Bcar3Q9QZK2 820 aa28.1■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Lama4P97927 1816 aa28.1■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Mcm2P97310 904 aa28.09■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Pim2Q62070 370 aa28.09■■■□□ 2.09
Upf3a-201ENSMUST00000043767 SowahdQ8BY98 327 aa28.09■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Susd4Q8BH32 490 aa28.08■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Srp68Q8BMA6 625 aaKnown RBP28.08■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Trim34aQ99PP6 485 aa28.08■■■□□ 2.09
Upf3a-201ENSMUST00000043767 KnstrnQ9D9Z1 312 aaKnown RBP28.08■■■□□ 2.09
Upf3a-201ENSMUST00000043767 NgdnQ9DB96 315 aaKnown RBP28.08■■■□□ 2.09
Upf3a-201ENSMUST00000043767 Cops6O88545 324 aa28.07■■■□□ 2.08
Retrieved 100 of 22,080 RNA–protein pairs in 39.9 ms