RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 CCDC181Q5TID7 509 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 FNDC7Q5VTL7 733 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 NSUN5P2Q63ZY6 315 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF549Q6P9A3 640 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 TMEM64Q6YI46 380 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 DGAT2L6Q6ZPD8 337 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CENPUQ71F23 418 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 PIWIL4Q7Z3Z4 852 aaKnown RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 LACC1Q8IV20 430 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CCDC103Q8IW40 242 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 GCNT2Q8N0V5 402 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 LRRC25Q8N386 305 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 FBXW8Q8N3Y1 598 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 RASGEF1CQ8N431 466 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ANKRD53Q8N9V6 530 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 MBD3L2Q8NHZ7 208 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 PTPMT1Q8WUK0 201 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ALG3Q92685 438 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 MFSD3Q96ES6 412 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 WDYHV1Q96HA8 205 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 JSRP1Q96MG2 331 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 PANX3Q96QZ0 392 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 OR4K3Q96R72 315 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CSF3RQ99062 836 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 FERMT1Q9BQL6 677 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 G6PC3Q9BUM1 346 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 TSSK1BQ9BXA7 367 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 UGT2B28Q9BY64 529 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 REG4Q9BYZ8 158 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 OSBPL8Q9BZF1 889 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ACKR4Q9NPB9 350 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 PRTFDC1Q9NRG1 225 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 TREX1Q9NSU2 369 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 SACM1LQ9NTJ5 587 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF701Q9NV72 531 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 UTP6Q9NYH9 597 aaKnown RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CAMK2AQ9UQM7 478 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF148Q9UQR1 794 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 EIF3LQ9Y262 564 aaKnown RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CD8B2A6NJW9 211 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 A8MV72 311 aaPredicted RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 A8MXE2 369 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 FAM47E-STBD1D6RA91 191 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CASKO14936 926 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 KPNA5O15131 536 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 NRDCO43847 1150 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 AKR1B10O60218 316 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 TNFSF13O75888 250 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 VAPBO95292 243 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 TBX6O95947 436 aaPredicted RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 SLC35G6P0C7Q6 338 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 ZSCAN5DPP0CG00 497 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 TMIGD3P0DMS9 266 aaPredicted RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CD8BP10966 210 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 RNH1P13489 461 aaKnown RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CRYGSP22914 178 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 JAK1P23458 1154 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 GDF1P27539 372 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 ATP5DP30049 168 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 OPRM1P35372 400 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 ACVR1BP36896 505 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 MASP1P48740 699 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 TTPAP49638 278 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 NAGLUP54802 743 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 SESN2P58004 480 aaPredicted RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 TIAL1Q01085 375 aaKnown RBP eCLIP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 BMPR2Q13873 1038 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 VEZF1Q14119 521 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 HERC3Q15034 1050 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 PHKG1Q16816 387 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CLEC12BQ2HXU8 276 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 SLC22A10Q63ZE4 541 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 VASNQ6EMK4 673 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 AGTRAPQ6RW13 159 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF474Q6S9Z5 364 aaPredicted RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 PPP1R21Q6ZMI0 780 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 IL17RELQ6ZVW7 336 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 C17orf64Q86WR6 236 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 RHOT2Q8IXI1 618 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 GPALPP1Q8IXQ4 340 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CPNE9Q8IYJ1 553 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 FAM47BQ8NA70 645 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 OR10G3Q8NGC4 313 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 OR4K1Q8NGD4 311 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 SLC22A8Q8TCC7 542 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF721Q8TF20 911 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 DIO2Q92813 273 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 INTS12Q96CB8 462 aaKnown RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 LRRC46Q96FV0 321 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 MAP6Q96JE9 813 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 TTC1Q99614 292 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 EBNA1BP2Q99848 306 aaKnown RBP4.8□□□□□ -1.64
PTPN4-209ENST00000469511 TUBA1CQ9BQE3 449 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CCDC77Q9BR77 488 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 BRINP2Q9C0B6 783 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 OR8D2Q9GZM6 311 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 ZFP64Q9NPA5 681 aa4.8□□□□□ -1.64
PTPN4-209ENST00000469511 CCDC177Q9NQR7 707 aaPredicted RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms