RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 COL21A1Q96P44 957 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 TPK1Q9H3S4 243 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 WDR26Q9H7D7 661 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 FAIMQ9NVQ4 179 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 TAAR2Q9P1P5 351 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 GSAPA4D1B5 854 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 H3BN98 237 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 TNFRSF11BO00300 401 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 SLC1A7O00341 560 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 GNB5O14775 395 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 PRMT3O60678 531 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 BCAS1O75363 584 aaPredicted RBP7.97□□□□□ -1.13
CD44-208ENST00000428726 MYF5P13349 255 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 IL1RNP18510 177 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 CRHBPP24387 322 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 CERS1P27544 350 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 TTKP33981 857 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 PPP2R2BQ00005 443 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 CSTF3Q12996 717 aaKnown RBP7.97□□□□□ -1.13
CD44-208ENST00000428726 CDK5R2Q13319 367 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 HIST2H2ACQ16777 129 aaPredicted RBP7.97□□□□□ -1.13
CD44-208ENST00000428726 CLEC12AQ5QGZ9 265 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 CCNJQ5T5M9 372 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 HIST2H2AA3Q6FI13 130 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 SYCE2Q6PIF2 218 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 B3GNT8Q7Z7M8 397 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 PSMA8Q8TAA3 256 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 LRIG1Q96JA1 1093 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 DPH7Q9BTV6 452 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 ASPSCR1Q9BZE9 553 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 TPSD1Q9BZJ3 242 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 MCOLN1Q9GZU1 580 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 TMEM168Q9H0V1 697 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 ABCB10Q9NRK6 738 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 CAB39Q9Y376 341 aaPredicted RBP7.97□□□□□ -1.13
CD44-208ENST00000428726 PCDHB11Q9Y5F2 797 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 BOD1L1Q8NFC6 3051 aa7.97□□□□□ -1.13
CD44-208ENST00000428726 EDDM13A0A1B0GTR0 161 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 ZNF701M0R085 212 aaPredicted RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 WWP2O00308 870 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 SLC9A3R1O14745 358 aaPredicted RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 KLF8O95600 359 aaPredicted RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 EGFP01133 1207 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 BUD31P41223 144 aaPredicted RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 ACTR1BP42025 376 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 ACTR1AP61163 376 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 EMX1Q04741 257 aaPredicted RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 SRSF11Q05519 484 aaKnown RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 ZNF763Q0D2J5 394 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 TTC23Q5W5X9 447 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 XAF1Q6GPH4 301 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 GRHL2Q6ISB3 625 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 TMEM107Q6UX40 140 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 Q6ZNX1 250 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 PRSS41Q7RTY9 318 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 TSEN54Q7Z6J9 526 aaKnown RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 TAGAPQ8N103 731 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 DTX3Q8N9I9 347 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 VPS37AQ8NEZ2 397 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.96□□□□□ -1.13
CD44-208ENST00000428726 HCAR2Q8TDS4 363 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 DNASE1L2Q92874 299 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 TMEM203Q969S6 136 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 CLIP3Q96DZ5 547 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 FCRL1Q96LA6 429 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 HHIPQ96QV1 700 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 NODALQ96S42 347 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 GAS2L1Q99501 681 aaPredicted RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 TTTY10Q9BZA0 68 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 SPATA6Q9NWH7 488 aaPredicted RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 MARK1Q9P0L2 795 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 PAIP2BQ9ULR5 123 aaKnown RBP7.96□□□□□ -1.13
CD44-208ENST00000428726 GPR52Q9Y2T5 361 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 SNX5Q9Y5X3 404 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 PTPRSQ13332 1948 aa7.96□□□□□ -1.13
CD44-208ENST00000428726 FAM186AA6NE01 2351 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 TRBC2A0A5B9 178 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 PAPLNO95428 1278 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 NADKO95544 446 aaPredicted RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 STSP08842 583 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 DBTP11182 482 aaKnown RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 HOXB9P17482 250 aaPredicted RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 POLR2CP19387 275 aaPredicted RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 SDHBP21912 280 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 CDH3P22223 829 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 ITGB7P26010 798 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 HOXA9P31269 272 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 TRPC1P48995 793 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 TMED10P49755 219 aaKnown RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 HLCSP50747 726 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 ARHGDIAP52565 204 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 SIM1P81133 766 aaPredicted RBP7.96□□□□□ -1.14
CD44-208ENST00000428726 CDK6Q00534 326 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 IFITM3Q01628 133 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 MTAPQ13126 283 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 RGS21Q2M5E4 152 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 AGBL4Q5VU57 503 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 ANKRD54Q6NXT1 300 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 LRRTM4Q86VH4 590 aa7.96□□□□□ -1.14
CD44-208ENST00000428726 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms