RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 IL1AP01583 271 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 SYPP08247 313 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 ANXA4P09525 319 aaPredicted RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 GKP32189 559 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 ATN1P54259 1190 aaPredicted RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 CSTF1Q05048 431 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 BOP1Q14137 746 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 NCF4Q15080 339 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 TEAD4Q15561 434 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 HSDL2Q6YN16 418 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 KRT74Q7RTS7 529 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 LIX1LQ8IVB5 337 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 POF1BQ8WVV4 589 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 KATNBL1Q9H079 304 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 VPS29Q9UBQ0 182 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 NCKAP1Q9Y2A7 1128 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 PRG3Q9Y2Y8 225 aaPredicted RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 TRBC2A0A5B9 178 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 GTPBP1O00178 669 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 BNIP3LO60238 219 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 SH3BP5O60239 455 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 CLDN7O95471 211 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 CTRB1P17538 263 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 ITGALP20701 1170 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 CD9P21926 228 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 ALDH9A1P49189 494 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 BCL2L1Q07817 233 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 RGS1Q08116 209 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 MTAPQ13126 283 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 GALEQ14376 348 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 SUZ12Q15022 739 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 ZMYND11Q15326 602 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 TRIM71Q2Q1W2 868 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 ZXDCQ2QGD7 858 aaPredicted RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 XKR6Q5GH73 641 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 CTRB2Q6GPI1 263 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 KIAA1841Q6NSI8 718 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 NPAS3Q8IXF0 933 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 C1orf52Q8N6N3 182 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 NANOGP1Q8N7R0 232 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 AP3S1Q92572 193 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 RIT1Q92963 219 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 C1QTNF6Q9BXI9 259 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 LINC00597Q9H2U6 94 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 FCF1Q9Y324 198 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 RPL36Q9Y3U8 105 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 RALGAPA2Q2PPJ7 1873 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 TRBV4-1A0A0J9YWV2 114 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 PRAMEF4O60810 478 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 TOXO94900 526 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 CHI3L1P36222 383 aaPredicted RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 ZNF81P51508 661 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 RBBP4Q09028 425 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 MGAT3Q09327 533 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 BTN1A1Q13410 526 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 RNASE12Q5GAN4 147 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 PRAMEF9Q5VWM5 478 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 RNF219Q5W0B1 726 aaPredicted RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 CERS6Q6ZMG9 384 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 KCTD20Q7Z5Y7 419 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.04□□□□□ -0.643e-65■■■□□ 17.1
HMGCS1-202ENST00000433297 TM9SF4Q92544 642 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 MSLNLQ96KJ4 702 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 SLC35A5Q9BS91 424 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 MAGEH1Q9H213 219 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 SLC28A3Q9HAS3 691 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 LSM2Q9Y333 95 aaKnown RBP11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 PRKAB1Q9Y478 270 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 NINQ8N4C6 2090 aa11.04□□□□□ -0.64
HMGCS1-202ENST00000433297 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 PROM1O43490 865 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 TP53P04637 393 aaPredicted RBP11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 LHCGRP22888 699 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 PCGF2P35227 344 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 ETV5P41161 510 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 ETV1P50549 477 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 CLDN20P56880 219 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 RPL6Q02878 288 aaKnown RBP11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 ZNF177Q13360 481 aaPredicted RBP11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 NFATC2Q13469 925 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 CHRNA6Q15825 494 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 MPPE1Q53F39 396 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 TMEM65Q6PI78 240 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 USP45Q70EL2 814 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 CHCHD4Q8N4Q1 142 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 AIFM2Q9BRQ8 373 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 TINF2Q9BSI4 451 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 TMED9Q9BVK6 235 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 CLEC4MQ9H2X3 399 aaPredicted RBP11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 FTSJ1Q9UET6 329 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 GSTK1Q9Y2Q3 226 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 PAPPA2Q9BXP8 1791 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 A0A0A6YYJ9 748 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 IGHA2P01877 340 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 IRF1P10914 325 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 ACADMP11310 421 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 ETV3P41162 512 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 XKP51811 444 aa11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 MLLT11Q13015 90 aaPredicted RBP11.03□□□□□ -0.64
HMGCS1-202ENST00000433297 INSL4Q14641 139 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms