RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 DYRK4Q9NR20 520 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 SIRT3Q9NTG7 399 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 ZFR2Q9UPR6 939 aaKnown RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 SH3GLB1Q9Y371 365 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 TSC22D4Q9Y3Q8 395 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 C4orf51C9J302 202 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 TPD52L2O43399 206 aaKnown RBP12.74□□□□□ -0.37
CCDC3-202ENST00000378839 NOL3O60936 208 aaKnown RBP12.74□□□□□ -0.37
CCDC3-202ENST00000378839 ARAFP10398 606 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 IDUAP35475 653 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 XCR1P46094 333 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 PRIM2P49643 509 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 LIM2P55344 173 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 NCS1P62166 190 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 MICAQ29983 383 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 PROX2Q3B8N5 592 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 DEPDC1Q5TB30 811 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 PSRC1Q6PGN9 363 aaPredicted RBP12.74□□□□□ -0.37
CCDC3-202ENST00000378839 OLIG3Q7RTU3 272 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 COMTD1Q86VU5 262 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 TEX10Q9NXF1 929 aaPredicted RBP12.74□□□□□ -0.37
CCDC3-202ENST00000378839 TRPM6Q9BX84 2022 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 PRAMEF27A3QJZ7 478 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 SCAMP1O15126 338 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 PRKRAO75569 313 aaKnown RBP12.74□□□□□ -0.37
CCDC3-202ENST00000378839 GABRB1P18505 474 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 CD72P21854 359 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 CLCNKAP51800 687 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 GPM6BQ13491 265 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 CYP2A13Q16696 494 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 TMEM236Q5W0B7 351 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 TNFAIP8L2Q6P589 184 aaPredicted RBP12.74□□□□□ -0.37
CCDC3-202ENST00000378839 LSRQ86X29 649 aaPredicted RBP12.74□□□□□ -0.37
CCDC3-202ENST00000378839 LGI4Q8N135 537 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 OXR1Q8N573 874 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 GPR32P1Q8NGA4 272 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 RORBQ92753 470 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 INIPQ9NRY2 104 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 RAB23Q9ULC3 237 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 MAPRE3Q9UPY8 281 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 ICKQ9UPZ9 632 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 TPRKBQ9Y3C4 175 aa12.74□□□□□ -0.37
CCDC3-202ENST00000378839 DDCP20711 480 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 NUDT6P53370 316 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 CRISP3P54108 245 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 LRRTM4Q86VH4 590 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 SLC38A5Q8WUX1 472 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 RAB8BQ92930 207 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 INSM2Q96T92 566 aaPredicted RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 RPP25Q9BUL9 199 aaKnown RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 THSD1Q9NS62 852 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 OR2A25A4D2G3 310 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 RGS10O43665 173 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 PAK4O96013 591 aaPredicted RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 PSMB9P28065 219 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 GGT2P36268 569 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 ALDH9A1P49189 494 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 PCBP4P57723 403 aaKnown RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 FADDQ13158 208 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 C9orf50Q5SZB4 431 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 C10orf62Q5T681 223 aaPredicted RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 C6orf183Q5T699 404 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 RBM45Q8IUH3 476 aaKnown RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 SNX29P2Q8IUI4 249 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 CROCCP3Q8IVE0 287 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 C7orf61Q8IZ16 206 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 OR4D11Q8NGI4 311 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 BORCS5Q969J3 196 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 MTERF3Q96E29 417 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 TEFMQ96QE5 360 aaKnown RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 SLC6A17Q9H1V8 727 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 WASH6PQ9NQA3 447 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 MIEF1Q9NQG6 463 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 CCDC88CQ9P219 2028 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 M0R082 166 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 KAT7O95251 611 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 LIPAP38571 399 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 SOX9P48436 509 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 PXNP49023 591 aaPredicted RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 C21orf59P57076 290 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 LRRC74AQ0VAA2 488 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 SAXO2Q658L1 398 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 WDR53Q7Z5U6 358 aaPredicted RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 C17orf64Q86WR6 236 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 TEX101Q9BY14 249 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 KLHL31Q9H511 634 aa12.73□□□□□ -0.37
CCDC3-202ENST00000378839 PNMA8BQ9ULN7 279 aaPredicted RBP12.73□□□□□ -0.37
CCDC3-202ENST00000378839 PCDH8O95206 1070 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 GASTP01350 101 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 UQCRC2P22695 453 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 MAPK12P53778 367 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 RBBP4Q09028 425 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 HSPB3Q12988 150 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 RPA4Q13156 261 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 IRF4Q15306 451 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 TRIM40Q6P9F5 258 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 CEACAM20Q6UY09 585 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 IKBIPQ70UQ0 350 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 PRSS48Q7RTY5 328 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 IGFN1Q86VF2 1251 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms