RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 PPP3R1P63098 170 aa13.18□□□□□ -0.3
SIX4-201ENST00000216513 TARDBPQ13148 414 aaKnown RBP eCLIP13.18□□□□□ -0.3
SIX4-201ENST00000216513 IL18Q14116 193 aa13.18□□□□□ -0.3
SIX4-201ENST00000216513 ERV3-1Q14264 604 aa13.18□□□□□ -0.3
SIX4-201ENST00000216513 IFI44LQ53G44 452 aa13.18□□□□□ -0.3
SIX4-201ENST00000216513 LRRC25Q8N386 305 aaPredicted RBP13.18□□□□□ -0.3
SIX4-201ENST00000216513 ZBTB8BQ8NAP8 495 aaPredicted RBP13.18□□□□□ -0.3
SIX4-201ENST00000216513 GPR26Q8NDV2 337 aa13.18□□□□□ -0.3
SIX4-201ENST00000216513 HPS1Q92902 700 aa13.18□□□□□ -0.3
SIX4-201ENST00000216513 RTKNQ9BST9 563 aa13.18□□□□□ -0.3
SIX4-201ENST00000216513 SMOC1Q9H4F8 434 aa13.18□□□□□ -0.3
SIX4-201ENST00000216513 TJP1Q07157 1748 aa13.18□□□□□ -0.3
SIX4-201ENST00000216513 TGDSO95455 350 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 NADKO95544 446 aaPredicted RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 EBLN1P0CF75 366 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 ACPPP15309 386 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 XCR1P46094 333 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 ZNF77Q15935 545 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 SGCAQ16586 387 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 NADSYN1Q6IA69 706 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 NATD1Q8N6N6 113 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 CCDC74AQ96AQ1 378 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 FER1L6-AS2Q96M78 137 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 CADM1Q9BY67 442 aaKnown RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 CRISPLD2Q9H0B8 497 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 TMEM185BQ9H7F4 350 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 PLGRKTQ9HBL7 147 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 PRDM4Q9UKN5 801 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 H3BML4 177 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 GADD45GO95257 159 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 ECDO95905 644 aaPredicted RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 PMS2P3Q13401 168 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 DPY19L1Q2PZI1 675 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 ASTLQ6HA08 431 aaPredicted RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 SLC2A7Q6PXP3 512 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 ZSCAN4Q8NAM6 433 aaPredicted RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 NFKBIDQ8NI38 313 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 MGME1Q9BQP7 344 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 KCMF1Q9P0J7 381 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 MARCH4Q9P2E8 410 aaPredicted RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 POFUT2Q9Y2G5 429 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 RSL1D1O76021 490 aaKnown RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 CCNB2O95067 398 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 IL3P08700 152 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 RSPO2Q6UXX9 243 aaPredicted RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 SYNPOQ8N3V7 929 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 EIF1ADQ8N9N8 165 aaKnown RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 OR2A12Q8NGT7 310 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 RAB8BQ92930 207 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 FRMD6Q96NE9 622 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 GPATCH1Q9BRR8 931 aaKnown RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 ALOXE3Q9BYJ1 711 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 ATXN7L1Q9ULK2 861 aaPredicted RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 FADS3Q9Y5Q0 445 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 MYH6P13533 1939 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 A0A1W2PRG6 482 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 KLK10O43240 276 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 CDH15P55291 814 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 GMFBP60983 142 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 PPP1R3AQ16821 1122 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 KIAA1191Q96A73 305 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 THUMPD1Q9NXG2 353 aaKnown RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 SPO11Q9Y5K1 396 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 C17orf105B2RV13 164 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 E7ENX8 843 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 IGHEP01854 428 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 PEPDP12955 493 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 MPLP40238 635 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 TSC22D1Q15714 1073 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 DEFB109BQ30KR1 87 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 MEIOBQ8N635 442 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 DTWD2Q8NBA8 298 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 GLB1L3Q8NCI6 653 aaPredicted RBP13.17□□□□□ -0.3
SIX4-201ENST00000216513 SEC14L1Q92503 715 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 CRELD1Q96HD1 420 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 DOHHQ9BU89 302 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 COQ10BQ9H8M1 238 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 PMF1-BGLAPU3KQ54 211 aa13.17□□□□□ -0.3
SIX4-201ENST00000216513 BCKDKO14874 412 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 NR2C1P13056 603 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 PORP16435 677 aaPredicted RBP13.16□□□□□ -0.3
SIX4-201ENST00000216513 AOC1P19801 751 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 PRKACGP22612 351 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 ERVK-8P63133 956 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 ZNF763Q0D2J5 394 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 MERTKQ12866 999 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 RPA4Q13156 261 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 OLFML2AQ68BL7 652 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 LARP4Q71RC2 724 aaKnown RBP eCLIP13.16□□□□□ -0.3
SIX4-201ENST00000216513 RAB11FIP2Q7L804 512 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 PQLC1Q8N2U9 271 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 NUP43Q8NFH3 380 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 ADAMTS18Q8TE60 1221 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 CLCC1Q96S66 551 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 BRF2Q9HAW0 419 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 IL1RAPQ9NPH3 570 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 PADI1Q9ULC6 663 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 ZNF20P17024 532 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 PDHA2P29803 388 aa13.16□□□□□ -0.3
SIX4-201ENST00000216513 ZNF423Q2M1K9 1284 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms