RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PCDH10Q9P2E7 1040 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 LOC285095A0A1B0GVY8 99 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TLR4O00206 839 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TGM5O43548 720 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 IL3P08700 152 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 CSNK2A2P19784 350 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-204ENST00000519664 SPINT3P49223 89 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 BTN3A2P78410 334 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 SLC13A2Q13183 592 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 SLC35F1Q5T1Q4 408 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 UGT2A3Q6UWM9 527 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 RFLNAQ6ZTI6 216 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 CLEC14AQ86T13 490 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 PMEPA1Q969W9 287 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 RGMAQ96B86 450 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 RNF31Q96EP0 1072 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 FEVQ99581 238 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 RTP3Q9BQQ7 232 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 YTHDF1Q9BYJ9 559 aaKnown RBP11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF696Q9H7X3 374 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ARNT2Q9HBZ2 717 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TMEM138Q9NPI0 162 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TMEM9Q9P0T7 183 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TRPS1Q9UHF7 1281 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 MKL2Q9ULH7 1088 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 PRSS21Q9Y6M0 314 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 NPPAP01160 153 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 KLKB1P03952 638 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 SRCP12931 536 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 AGXTP21549 392 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 RCVRNP35243 200 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 CD47Q08722 323 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 NDUFAF6Q330K2 333 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF544Q6NX49 715 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 SLC22A16Q86VW1 577 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ADGRG5Q8IZF4 528 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ANKFN1Q8N957 763 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF420Q8TAQ5 688 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-204ENST00000519664 SMPDL3AQ92484 453 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 SCRN2Q96FV2 425 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 IFT27Q9BW83 186 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TTTY10Q9BZA0 68 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TM9SF3Q9HD45 589 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 CCDC59Q9P031 241 aaKnown RBP11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TMEM181Q9P2C4 612 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 FEZF1A0PJY2 475 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 UBFD1O14562 309 aaKnown RBP11.28□□□□□ -0.6
SYNPO-204ENST00000519664 BMP2P12643 396 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ATF6P18850 670 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 MPIP34949 423 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 POLR2IP36954 125 aaKnown RBP11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TBPL1P62380 186 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 GPM6BQ13491 265 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 RAB43Q86YS6 212 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 GAL3ST4Q96RP7 486 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 IRF2BPLQ9H1B7 796 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 RIMS3Q9UJD0 308 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 STOML2Q9UJZ1 356 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 MRPS33Q9Y291 106 aaKnown RBP11.28□□□□□ -0.6
SYNPO-204ENST00000519664 PEX16Q9Y5Y5 336 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 MICAL3Q7RTP6 2002 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 E7EQ34 232 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 MATN4O95460 622 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ARRB2P32121 409 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ADRA1AP35348 466 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 PPIGQ13427 754 aaKnown RBP eCLIP11.28□□□□□ -0.6
SYNPO-204ENST00000519664 TPRG1LQ5T0D9 272 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 PROKR1Q8TCW9 393 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 SNX33Q8WV41 574 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 GAB3Q8WWW8 586 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 RHBDF1Q96CC6 855 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 UBXN10Q96LJ8 280 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 RABL2AQ9UBK7 228 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-204ENST00000519664 ERVK-11Q9UQG0 969 aa11.28□□□□□ -0.6
SYNPO-204ENST00000519664 A0A096LPI6 279 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 ACOX3O15254 700 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 MSL3P1P0C860 447 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 ATF4P18848 351 aaPredicted RBP11.27□□□□□ -0.6
SYNPO-204ENST00000519664 NRIP1P48552 1158 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 PNLIPRP1P54315 467 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 CLDN8P56748 225 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 GALNT1Q10472 559 aaPredicted RBP11.27□□□□□ -0.6
SYNPO-204ENST00000519664 SEMA3BQ13214 749 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 NFE2L1Q14494 772 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF805Q5CZA5 627 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF551Q7Z340 670 aaPredicted RBP11.27□□□□□ -0.6
SYNPO-204ENST00000519664 OR6K6Q8NGW6 343 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 GRHL3Q8TE85 626 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 PXYLP1Q8TE99 480 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 C11orf84Q9BUA3 381 aaPredicted RBP11.27□□□□□ -0.6
SYNPO-204ENST00000519664 REEP4Q9H6H4 257 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 MS4A12Q9NXJ0 267 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 GPR45Q9Y5Y3 372 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 TTC3P53804 2025 aa11.27□□□□□ -0.6
SYNPO-204ENST00000519664 HHLA1C9JL84 531 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 NOS1APO75052 506 aaPredicted RBP11.27□□□□□ -0.61
SYNPO-204ENST00000519664 TFAP2AP05549 437 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 STSP08842 583 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 PRKAR1AP10644 381 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 GNG2P59768 71 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms