RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503		A0A1W2PQ45	241 aa	Predicted RBP	11.42	□□□□□ -0.58
MSH6-204	ENST00000445503		A0A1W2PQY0	241 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	RTCA	O00442	366 aa	Known RBP	11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	GFRA2	O00451	464 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	SCAMP2	O15127	329 aa	Known RBP	11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	GRM6	O15303	877 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	HOXC8	P31273	242 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	IFNA8	P32881	189 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	ITGA1	P56199	1179 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	KIAA0040	Q15053	153 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	COX20	Q5RI15	118 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	ALG1L	Q6GMV1	187 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	CEACAM20	Q6UY09	585 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	PARP16	Q8N5Y8	322 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	TCEANC	Q8N8B7	351 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	OR7G3	Q8NG95	312 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	CD99L2	Q8TCZ2	262 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	BCL7C	Q8WUZ0	217 aa	Predicted RBP	11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	ASB11	Q8WXH4	323 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	NIPSNAP1	Q9BPW8	284 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	POLR2J3	Q9H1A7	115 aa	Known RBP	11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	PCDH10	Q9P2E7	1040 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	ENOPH1	Q9UHY7	261 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	HCN4	Q9Y3Q4	1203 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	PMF1-BGLAP	U3KQ54	211 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	PLXNA1	Q9UIW2	1896 aa		11.42	□□□□□ -0.58
MSH6-204	ENST00000445503	CCDC182	A6NF36	153 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	FAM25A	B3EWG3	89 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	FAM25C	B3EWG5	89 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	FAM25G	B3EWG6	89 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	S100A1	P23297	94 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	SPINT3	P49223	89 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	IRF5	Q13568	498 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	LEXM	Q3ZCV2	418 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	TRIQK	Q629K1	86 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	OTOP2	Q7RTS6	562 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	B3GNT7	Q8NFL0	401 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	TESC	Q96BS2	214 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	IL17F	Q96PD4	163 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	CLSTN3	Q9BQT9	956 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	SLC30A2	Q9BRI3	323 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	RDH14	Q9HBH5	336 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	C5AR2	Q9P296	337 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	FBXO10	Q9UK96	956 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	CFL2	Q9Y281	166 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	ARHGEF33	A8MVX0	844 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	SRC	P12931	536 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	PTN	P21246	168 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	SOX3	P41225	446 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	ZNF852	Q6ZMS4	543 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	SORBS1	Q9BX66	1292 aa	Known RBP	11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	AHSP	Q9NZD4	102 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	ANKMY1	Q9P2S6	941 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	PCDHGB6	Q9Y5F9	930 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	SBF1	O95248	1867 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	GON4L	Q3T8J9	2241 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	TLR4	O00206	839 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	TLX2	O43763	284 aa	Predicted RBP	11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	ZDHHC11B	P0C7U3	371 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	PCMT1	P22061	227 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	GJA8	P48165	433 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	CXCR4	P61073	352 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	SF3B4	Q15427	424 aa	Known RBP eCLIP	11.41	□□□□□ -0.58	1e-6	■■■□□ 16.5
MSH6-204	ENST00000445503	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	LRIF1	Q5T3J3	769 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	ZNF57	Q68EA5	555 aa	Predicted RBP	11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	CCDC80	Q76M96	950 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	CHPF	Q8IZ52	775 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	CELF2-AS1	Q8N7Q2	184 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	ART5	Q96L15	291 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	FNDC11	Q9BVV2	318 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	CAPN10	Q9HC96	672 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	H2AFY2	Q9P0M6	372 aa	Predicted RBP	11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	CCL27	Q9Y4X3	112 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	INSL5	Q9Y5Q6	135 aa		11.41	□□□□□ -0.58
MSH6-204	ENST00000445503	CDRT1	O95170	752 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	CD160	O95971	181 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	HLA-E	P13747	358 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	HMGA1	P17096	107 aa	Known RBP	11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	GGT2	P36268	569 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	MAPK12	P53778	367 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	SELENOW	P63302	87 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	SNAPC1	Q16533	368 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	ZNF697	Q5TEC3	545 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	AGAP7P	Q5VUJ5	663 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	UBE2U	Q5VVX9	321 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	LIPK	Q5VXJ0	399 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	GEMIN6	Q8WXD5	167 aa	Known RBP	11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	IGSF21	Q96ID5	467 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	MAGEB10	Q96LZ2	347 aa	Predicted RBP	11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	OR5M11	Q96RB7	305 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	COMMD3	Q9UBI1	195 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	GULP1	Q9UBP9	304 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	TEKT2	Q9UIF3	430 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	ERVK-11	Q9UQG0	969 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	IFT52	Q9Y366	437 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	PCDHGA6	Q9Y5G7	932 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	PCDHGA4	Q9Y5G9	962 aa		11.4	□□□□□ -0.58
MSH6-204	ENST00000445503	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms