RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 RAB23Q9ULC3 237 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 CCDC88CQ9P219 2028 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 PPM1DO15297 605 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 GCM2O75603 506 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 ACP5P13686 325 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 FPR1P21462 350 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 HOXA9P31269 272 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 CLCNKAP51800 687 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 CDH12P55289 794 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 KCNJ10P78508 379 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 OCA2Q04671 838 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 LRRC74AQ0VAA2 488 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 EPS8Q12929 822 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 PIWIL3Q7Z3Z3 882 aaKnown RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 ZNF540Q8NDQ6 660 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SP7Q8TDD2 431 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SMARCD2Q92925 531 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 UCN3Q969E3 161 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 REPS1Q96D71 796 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 EFCAB11Q9BUY7 163 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 FUNDC2Q9BWH2 189 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 YTHDF1Q9BYJ9 559 aaKnown RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SLC6A16Q9GZN6 736 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 PRSS16Q9NQE7 514 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 MBNL1Q9NR56 388 aaKnown RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 BLOC1S6Q9UL45 172 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SLC27A6Q9Y2P4 619 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 PRAMEF33A0A0G2JMD5 474 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 HSD3B1P14060 373 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 HSD3B2P26439 372 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 PSMB9P28065 219 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 HTR1BP28222 390 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 MAT2AP31153 395 aaKnown RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SLC19A1P41440 591 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 EMP3P54852 163 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 NFATC3Q12968 1075 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 HSPB3Q12988 150 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 C11orf91Q3C1V1 193 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 LSRQ86X29 649 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 JPH3Q8WXH2 748 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 MAGED4Q96JG8 741 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SLC6A17Q9H1V8 727 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 RLIMQ9NVW2 624 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 NFKBIL1Q9UBC1 381 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-201ENST00000341247 PLEKHM1Q9Y4G2 1056 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 SNX11Q9Y5W9 270 aa9.91□□□□□ -0.82
LIMA1-201ENST00000341247 A0A1W2PP55 124 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 NPIPB8E9PQR5 432 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 PSMD11O00231 422 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 CPNE6O95741 557 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 FURINP09958 794 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 IDH2P48735 452 aaKnown RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 SPIBQ01892 262 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 SCARB2Q14108 478 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 NPTX1Q15818 432 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 ZNF658BQ4V348 819 aaPredicted RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 RPS26P11Q5JNZ5 115 aaPredicted RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 PSRC1Q6PGN9 363 aaPredicted RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 MSANTD1Q6ZTZ1 278 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 AHSA2Q719I0 299 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 VN1R5Q7Z5H4 357 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 OR2L2Q8NH16 312 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 MIPOL1Q8TD10 442 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 SNRNP27Q8WVK2 155 aaKnown RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 RAB8BQ92930 207 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 RDH12Q96NR8 316 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 KXD1Q9BQD3 176 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 SGPP1Q9BX95 441 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 ZNF282Q9UDV7 671 aaPredicted RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 BTNL2Q9UIR0 455 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 KCNK6Q9Y257 313 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 A0A1W2PRB8 838 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 ANKDD1BA6NHY2 528 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 FAM20BO75063 409 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 ACADLP28330 430 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 NUDT6P53370 316 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 RPP38P78345 283 aaKnown RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 EMX1Q04741 257 aaPredicted RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 WSCD2Q2TBF2 565 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 BCL7AQ4VC05 210 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 KDM4DQ6B0I6 523 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 KLHL35Q6PF15 583 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 OLIG3Q7RTU3 272 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 UBE2Q1Q7Z7E8 422 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 TMIEQ8NEW7 156 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 TANKQ92844 425 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 RAD51AP1Q96B01 352 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 EXOSC8Q96B26 276 aaKnown RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 COQ8BQ96D53 544 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 FEVQ99581 238 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 OR52A5Q9H2C5 316 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 FZD3Q9NPG1 666 aa9.9□□□□□ -0.82
LIMA1-201ENST00000341247 IMP3Q9NV31 184 aaKnown RBP9.9□□□□□ -0.82
LIMA1-201ENST00000341247 SERTM1A2A2V5 107 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 RFXAPO00287 272 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 TNFRSF11BO00300 401 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 PFDN1O60925 122 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 KLHL18O94889 574 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 BCL10O95999 233 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 GSTM2P28161 218 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms