RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 WDR12Q9GZL7 423 aaKnown RBP11.49□□□□□ -0.57
USP1-201ENST00000339950 HEBP1Q9NRV9 189 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 COMMD3Q9UBI1 195 aa11.49□□□□□ -0.57
USP1-201ENST00000339950 H0YAE9 185 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 CTDSP2O14595 271 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 TSPAN9O75954 239 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 CD160O95971 181 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 TMBIM6P55061 237 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 SRP54P61011 504 aaKnown RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 TBPL1P62380 186 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 TCAIMQ8N3R3 496 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 ZCCHC10Q8TBK6 192 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 SUN5Q8TC36 379 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 SH3YL1Q96HL8 342 aaPredicted RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 FERD3LQ96RJ6 166 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 MBOAT4Q96T53 435 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 QRSL1Q9H0R6 528 aaKnown RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 DKK3Q9UBP4 350 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 RNF6Q9Y252 685 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 RTTNQ86VV8 2226 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 XIRP2A4UGR9 3374 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 K7ESM1 405 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 SGTAO43765 313 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 PAK4O96013 591 aaPredicted RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 AOAHP28039 575 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 RYKP34925 604 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 RCVRNP35243 200 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 AVPR1BP47901 424 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 CAV3P56539 151 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 HBA1P69905 142 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 MAP4K2Q12851 820 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 TOP3AQ13472 1001 aaPredicted RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 UGT8Q16880 541 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 GPR33Q49SQ1 333 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 IFI44LQ53G44 452 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 TPRG1LQ5T0D9 272 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 CPZQ66K79 652 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 ALG1LQ6GMV1 187 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 BEND5Q7L4P6 421 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 FAM83FQ8NEG4 500 aaPredicted RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 OR5D16Q8NGK9 328 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 OR13F1Q8NGS4 319 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 OR10G6Q8NH81 332 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 ENKURQ8TC29 256 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 BPIFB1Q8TDL5 484 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 SLC9A6Q92581 669 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 ISM1B1AKI9 464 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 FAM25AB3EWG3 89 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 FAM25CB3EWG5 89 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 FAM25GB3EWG6 89 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 H3BNC9 293 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 HYAL3O43820 417 aaPredicted RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 CAPNS1P04632 268 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 TSPAN19P0C672 248 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 SLC14A2Q15849 920 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 SNAPC1Q16533 368 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 PGBD3Q8N328 593 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 SCRN2Q96FV2 425 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 NECTIN4Q96NY8 510 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 C17orf62Q9BQA9 187 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 ALOXE3Q9BYJ1 711 aa11.48□□□□□ -0.57
USP1-201ENST00000339950 POLR2J2Q9GZM3 115 aaKnown RBP11.48□□□□□ -0.57
USP1-201ENST00000339950 ZNF860A6NHJ4 632 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 PSIP1O75475 530 aaKnown RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 FGF18O76093 207 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 IFNW1P05000 195 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 CLK3P49761 638 aaKnown RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 CLCNKAP51800 687 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 PPIGQ13427 754 aaKnown RBP eCLIP11.47□□□□□ -0.57
USP1-201ENST00000339950 PIN1Q13526 163 aaPredicted RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 SMU1Q2TAY7 513 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 C2orf27AQ580R0 203 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 C9orf64Q5T6V5 341 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 LIPKQ5VXJ0 399 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 KIAA1161Q6NSJ0 714 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 TRIM40Q6P9F5 258 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 SAMD11Q96NU1 681 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 NIPSNAP1Q9BPW8 284 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 CCM2Q9BSQ5 444 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 ABCG4Q9H172 646 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 TMEM245Q9H330 911 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 ZCCHC3Q9NUD5 404 aaKnown RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 SIRT5Q9NXA8 310 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 FNIP2Q9P278 1114 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 ZNF221Q9UK13 617 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 ANGPT4Q9Y264 503 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 ERGIC3Q9Y282 383 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 PPM1DO15297 605 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 PCDHGA12O60330 932 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 SOD2P04179 222 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 BMP4P12644 408 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 ZNF8P17098 575 aaPredicted RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 CRISP3P54108 245 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 GP2P55259 537 aaKnown RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 SRSF11Q05519 484 aaKnown RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 NOGQ13253 232 aa11.47□□□□□ -0.57
USP1-201ENST00000339950 LASP1Q14847 261 aaKnown RBP11.47□□□□□ -0.57
USP1-201ENST00000339950 ZNF57Q68EA5 555 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms