RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 KCNS3Q9BQ31 491 aa20.46■□□□□ 0.87
TRIM28-201ENST00000253024 DUSP12Q9UNI6 340 aa20.46■□□□□ 0.87
TRIM28-201ENST00000253024 IGLV3-16A0A075B6K0 115 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 KPNA4O00629 521 aaPredicted RBP20.45■□□□□ 0.86
TRIM28-201ENST00000253024 DLGAP3O95886 979 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 ITGA1P56199 1179 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 SCARB2Q14108 478 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 MPEG1Q2M385 716 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 VWCEQ96DN2 955 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 CNDP2Q96KP4 475 aaKnown RBP20.45■□□□□ 0.86
TRIM28-201ENST00000253024 MACROD1Q9BQ69 325 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 GULP1Q9UBP9 304 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 KCNE2Q9Y6J6 123 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 M0R082 166 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 LATO43561 262 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 CKMT1AP12532 417 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 POLR2EP19388 210 aaKnown RBP20.45■□□□□ 0.86
TRIM28-201ENST00000253024 DOC2BQ14184 412 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 GGTA1PQ4G0N0 100 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 PLEKHS1Q5SXH7 462 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 TSPYL5Q86VY4 417 aaPredicted RBP20.45■□□□□ 0.86
TRIM28-201ENST00000253024 HEATR4Q86WZ0 1026 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 TCAIMQ8N3R3 496 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 MFSD4AQ8N468 514 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 GGHQ92820 318 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 OR5M11Q96RB7 305 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 CCM2Q9BSQ5 444 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 DOHHQ9BU89 302 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 FAM120CQ9NX05 1096 aaKnown RBP20.45■□□□□ 0.86
TRIM28-201ENST00000253024 MS4A12Q9NXJ0 267 aa20.45■□□□□ 0.86
TRIM28-201ENST00000253024 SLC22A1O15245 554 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 ALOX12P18054 663 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 TGFBR2P37173 567 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 TGM4P49221 684 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 AP1S2P56377 157 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 NIPAL1Q6NVV3 410 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 DSN1Q9H410 356 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 SPATA6Q9NWH7 488 aaPredicted RBP20.44■□□□□ 0.86
TRIM28-201ENST00000253024 COL4A6Q14031 1691 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 PCM1Q15154 2024 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 GSTM1P09488 218 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 POLR2LP62875 67 aaKnown RBP20.44■□□□□ 0.86
TRIM28-201ENST00000253024 DBPQ10586 325 aaPredicted RBP20.44■□□□□ 0.86
TRIM28-201ENST00000253024 ST3GAL4Q11206 333 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 DUSP7Q16829 419 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 IQCCQ4KMZ1 466 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 RAET1GQ6H3X3 334 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 SPATC1Q76KD6 591 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 RBM45Q8IUH3 476 aaKnown RBP20.44■□□□□ 0.86
TRIM28-201ENST00000253024 POC5Q8NA72 575 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 OR8J2Q8NGG1 315 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 OR6Q1Q8NGQ2 317 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 IRF7Q92985 503 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 SLIRPQ9GZT3 109 aaKnown RBP20.44■□□□□ 0.86
TRIM28-201ENST00000253024 GIN1Q9NXP7 522 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 MICAL3Q7RTP6 2002 aa20.44■□□□□ 0.86
TRIM28-201ENST00000253024 FEZF1A0PJY2 475 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 TRIM43BA6NCK2 446 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 ATG13O75143 517 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 IL3P08700 152 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 VIPR1P32241 457 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 HSPB3Q12988 150 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 KEAP1Q14145 624 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 SMU1Q2TAY7 513 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 SYT6Q5T7P8 510 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-201ENST00000253024 LIPJQ5W064 366 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 KLHL23Q8NBE8 558 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 GLYATL1Q969I3 302 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 TPK1Q9H3S4 243 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 NAALAD2Q9Y3Q0 740 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 C1orf226A1L170 272 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 OR2A25A4D2G3 310 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 MMP20O60882 483 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 TIA1P31483 386 aaKnown RBP eCLIP20.43■□□□□ 0.86
TRIM28-201ENST00000253024 SERPINB10P48595 397 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 TPTEP56180 551 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 OXA1LQ15070 435 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 HIST2H2ACQ16777 129 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-201ENST00000253024 MED27Q6P2C8 311 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 Q8N9G6 341 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-201ENST00000253024 VN1R2Q8NFZ6 395 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 PPCDCQ96CD2 204 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 BTBD2Q9BX70 525 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 EMILIN2Q9BXX0 1053 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 TM7SF3Q9NS93 570 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 PAIP2BQ9ULR5 123 aaKnown RBP20.43■□□□□ 0.86
TRIM28-201ENST00000253024 ERVW-1Q9UQF0 538 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 PRR23AA6NEV1 266 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 PPM1DO15297 605 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 PSMB5P28074 263 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 TMED10P49755 219 aaKnown RBP20.43■□□□□ 0.86
TRIM28-201ENST00000253024 ERVFC1P60507 584 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 WDR53Q7Z5U6 358 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-201ENST00000253024 TAGAPQ8N103 731 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 BTN2A2Q8WVV5 523 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 FOPNLQ96NB1 174 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 FAM129BQ96TA1 746 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 WFDC6Q9BQY6 131 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 C14orf119Q9NWQ9 140 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 QPCTLQ9NXS2 382 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms