RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 BCAS1O75363 584 aaPredicted RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 CATP04040 527 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 SRPRAP08240 638 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 TIMP2P16035 220 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 PDHA2P29803 388 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 MAGEA2P43356 314 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 CSTF3Q12996 717 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 HTR4Q13639 388 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 ATP1A4Q13733 1029 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 SMN1Q16637 294 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 MTSS1LQ765P7 747 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 B3GNT8Q7Z7M8 397 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 TMPRSS11BQ86T26 416 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 SLC15A4Q8N697 577 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 WDR20Q8TBZ3 569 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 MUL1Q969V5 352 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 PLEKHA8Q96JA3 519 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 NECTIN4Q96NY8 510 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 RUBCNLQ9H714 662 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 REEP1Q9H902 201 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 KCNK12Q9HB15 430 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 FZD4Q9ULV1 537 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 SAP18O00422 153 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 AXIN1O15169 862 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 SCN2BO60939 215 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 NDUFS2O75306 463 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 SLCO2B1O94956 709 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 APODP05090 189 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 ITGAMP11215 1152 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 ZNF30P17039 623 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 IL1RNP18510 177 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 DNAJA1P31689 397 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 CD97P48960 835 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 CLK3P49761 638 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 MLLT10P55197 1068 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 GP2P55259 537 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 MOGQ16653 247 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 HNRNPA1L2Q32P51 320 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.26□□□□□ -0.778e-7■■■■■ 33
CUX1-205ENST00000425244 THOC7Q6I9Y2 204 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 TMEM53Q6P2H8 277 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 MSANTD1Q6ZTZ1 278 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 PIWIL3Q7Z3Z3 882 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 SYTL1Q8IYJ3 562 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 TTC29Q8NA56 475 aaPredicted RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 SETD9Q8NE22 299 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 DDHD1Q8NEL9 900 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 HUS1BQ8NHY5 278 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 RORBQ92753 470 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 AP2M1Q96CW1 435 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 PKP4Q99569 1192 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 TRIT1Q9H3H1 467 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 UBE2ZQ9H832 354 aaPredicted RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 KRT84Q9NSB2 600 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 FAM120CQ9NX05 1096 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 THUMPD1Q9NXG2 353 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 RAPGEFL1Q9UHV5 662 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 ZNF451Q9Y4E5 1061 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 HTR3EA5X5Y0 456 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 GABRR3A8MPY1 467 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 ZNF99A8MXY4 864 aaPredicted RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 TOR1BO14657 336 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 SCAMP2O15127 329 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 ATG13O75143 517 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 UGT2B11O75310 529 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 CLPXO76031 633 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 AP2A2O94973 939 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 FADS2O95864 444 aaKnown RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 OPN1SWP03999 348 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 ELFN1P0C7U0 828 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 GPX2P18283 190 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 FPR1P21462 350 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 PSMB9P28065 219 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 RYKP34925 604 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 EMX1Q04741 257 aaPredicted RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 GAB1Q13480 694 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 NR1D2Q14995 579 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 NPTX1Q15818 432 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 C9orf64Q5T6V5 341 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 ERICH5Q6P6B1 374 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 TMEM220Q6QAJ8 160 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 TRAM1L1Q8N609 369 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 ATL1Q8WXF7 558 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 UBE2FQ969M7 185 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 ZSCAN5AQ9BUG6 496 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 SPATA6Q9NWH7 488 aaPredicted RBP10.26□□□□□ -0.77
CUX1-205ENST00000425244 HCN2Q9UL51 889 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 PCDHB11Q9Y5F2 797 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 CORINQ9Y5Q5 1042 aa10.26□□□□□ -0.77
CUX1-205ENST00000425244 SPEGQ15772 3267 aa10.25□□□□□ -0.77
CUX1-205ENST00000425244 WDR87Q6ZQQ6 2873 aa10.25□□□□□ -0.77
CUX1-205ENST00000425244 TRIM64BA6NI03 449 aa10.25□□□□□ -0.77
CUX1-205ENST00000425244 PSIP1O75475 530 aaKnown RBP10.25□□□□□ -0.77
CUX1-205ENST00000425244 CCDC159P0C7I6 412 aa10.25□□□□□ -0.77
CUX1-205ENST00000425244 IMPA1P29218 277 aa10.25□□□□□ -0.77
CUX1-205ENST00000425244 HPCAL1P37235 193 aa10.25□□□□□ -0.77
CUX1-205ENST00000425244 RPS13P62277 151 aaKnown RBP10.25□□□□□ -0.77
CUX1-205ENST00000425244 IL18R1Q13478 541 aa10.25□□□□□ -0.77
CUX1-205ENST00000425244 STARD3Q14849 445 aa10.25□□□□□ -0.77
CUX1-205ENST00000425244 EIF4HQ15056 248 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms