RNA–Protein interactions for RNA: YLR207W

HRD3, Transcript of ER membrane protein that plays a central role in ERAD, yeast

Gene HRD3, Length 2,502 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HRD3	YLR207W	YNR065C	P53751	1116 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	OPT2	Q06593	877 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	SOG2	Q08817	791 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	SLX4	Q12098	748 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	TMA7	Q3E764	64 aa	Known RBP	2.98	□□□□□ -1.93
HRD3	YLR207W	SRB8	P25648	1427 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	AAR2	P32357	355 aa	Predicted RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	RDH54	P38086	958 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	ARL1	P38116	183 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	YAP3	P38749	330 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	MBP1	P39678	833 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	HXT13	P39924	564 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	KIP3	P53086	805 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	HXT17	P53631	564 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	HXT15	P54854	567 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	UTP5	Q04177	643 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	SPP382	Q06411	708 aa	Predicted RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	AOS1	Q06624	347 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	GIC2	Q06648	383 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	NTG2	Q08214	380 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	CAT8	P39113	1433 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	ARO1	P08566	1588 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	IRC20	Q06554	1556 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	THS1	P04801	734 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	HVG1	P0CE11	249 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	RPL8A	P17076	256 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	GSY1	P23337	708 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	PPH3	P32345	308 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	DOM34	P33309	386 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	PEX6	P33760	1030 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	GLY1	P37303	387 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	FUI1	P38196	639 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	NOC2	P39744	710 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	SLS1	P42900	643 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	YGR237C	P50089	785 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	ADE12	P80210	433 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	RAT1	Q02792	1006 aa	Known RBP	2.97	□□□□□ -1.93
HRD3	YLR207W	TFB2	Q02939	513 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	UGO1	Q03327	502 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	TAF8	Q03750	510 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	SPO71	Q03868	1245 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	RKM2	Q03942	479 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	YDR306C	Q06640	478 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	PTC5	Q12511	572 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	TMA17	Q12513	150 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	NUP145	P49687	1317 aa		2.97	□□□□□ -1.93
HRD3	YLR207W	NFS1	P25374	497 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	TFA2	P36145	328 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	REI1	P38344	393 aa	Predicted RBP	2.96	□□□□□ -1.93
HRD3	YLR207W	PAF1	P38351	445 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	NEM1	P38757	446 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	DSS1	P39112	969 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	NIT1	P40447	199 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	PRK1	P40494	810 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	PFD1	P46988	109 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	PEX8	P53248	589 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	SOK2	P53438	785 aa	Predicted RBP	2.96	□□□□□ -1.93
HRD3	YLR207W	ATG16	Q03818	150 aa		2.96	□□□□□ -1.93
HRD3	YLR207W	HEM13	P11353	328 aa	Known RBP	2.96	□□□□□ -1.94
HRD3	YLR207W	TRK1	P12685	1235 aa		2.96	□□□□□ -1.94
HRD3	YLR207W	YEF3	P16521	1044 aa	Known RBP	2.96	□□□□□ -1.94
HRD3	YLR207W	RGD1	P38339	666 aa		2.96	□□□□□ -1.94
HRD3	YLR207W	CEM1	P39525	442 aa		2.96	□□□□□ -1.94
HRD3	YLR207W	PMT3	P47190	753 aa		2.96	□□□□□ -1.94
HRD3	YLR207W	RTA1	P53047	317 aa		2.96	□□□□□ -1.94
HRD3	YLR207W	ALO1	P54783	526 aa	Known RBP	2.96	□□□□□ -1.94
HRD3	YLR207W	HAS1	Q03532	505 aa	Known RBP	2.96	□□□□□ -1.94
HRD3	YLR207W	YIG1	Q08956	461 aa		2.96	□□□□□ -1.94
HRD3	YLR207W	NKP1	Q12493	238 aa		2.96	□□□□□ -1.94
HRD3	YLR207W	TOM1	Q03280	3268 aa		2.96	□□□□□ -1.94
HRD3	YLR207W	TY1A-LR4	P0C2I8	440 aa	Known RBP	2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-DR6	P0CX70	440 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-ER1	P0CX71	440 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-LR2	P0CX72	440 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-PL	P0CX73	440 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-JR1	P0CX74	440 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-LR3	P0CX75	440 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-ML2	P0CX76	440 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	MLS1	P30952	554 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	ALG3	P38179	458 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	YAR028W	P39548	234 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	VPS27	P40343	622 aa	Known RBP	2.95	□□□□□ -1.94
HRD3	YLR207W	BRE2	P43132	505 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	VPS53	P47061	822 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	GCV1	P48015	400 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	2.95	□□□□□ -1.94	not detected
HRD3	YLR207W	MEC3	Q02574	474 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	ENT2	Q05785	613 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	COG4	Q06096	861 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-GR1	Q12085	440 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	2.95	□□□□□ -1.94
HRD3	YLR207W	TY1A-OL	Q92392	440 aa	Known RBP	2.95	□□□□□ -1.94
HRD3	YLR207W	DOP1	Q03921	1698 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	SAC7	P17121	654 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	AMN1	P38285	549 aa	Predicted RBP	2.95	□□□□□ -1.94
HRD3	YLR207W	ENP1	P38333	483 aa	Known RBP	2.95	□□□□□ -1.94
HRD3	YLR207W	GDH3	P39708	457 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	MTC5	Q03897	1148 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	ATG13	Q06628	738 aa		2.95	□□□□□ -1.94
HRD3	YLR207W	BRE1	Q07457	700 aa	Known RBP	2.95	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 24.2 ms