RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W RPL34AP87262 121 aaPredicted RBP2.41□□□□□ -2.02
PRP42YDR235W BAS1P22035 811 aa2.4□□□□□ -2.03
PRP42YDR235W TMT1P32643 299 aa2.4□□□□□ -2.03
PRP42YDR235W VPS35P34110 944 aa2.4□□□□□ -2.03
PRP42YDR235W RGD1P38339 666 aa2.4□□□□□ -2.03
PRP42YDR235W MDJ2P42834 146 aa2.4□□□□□ -2.03
PRP42YDR235W GCD6P32501 712 aaKnown RBP2.39□□□□□ -2.03
PRP42YDR235W RRT14P40470 206 aa2.39□□□□□ -2.03
PRP42YDR235W HFM1P51979 1187 aa2.39□□□□□ -2.03
PRP42YDR235W MUK1Q02866 612 aa2.39□□□□□ -2.03
PRP42YDR235W YPL109CQ02981 657 aa2.39□□□□□ -2.03
PRP42YDR235W SUB2Q07478 446 aaKnown RBP2.39□□□□□ -2.03
PRP42YDR235W NPC2Q12408 173 aa2.39□□□□□ -2.03
PRP42YDR235W TAF13P11747 167 aa2.39□□□□□ -2.03
PRP42YDR235W KAR4P25583 335 aa2.39□□□□□ -2.03
PRP42YDR235W MLS1P30952 554 aa2.39□□□□□ -2.03
PRP42YDR235W ROD1Q02805 837 aa2.39□□□□□ -2.03
PRP42YDR235W BI4P03879 638 aa2.38□□□□□ -2.03
PRP42YDR235W MKK2P32491 506 aa2.38□□□□□ -2.03
PRP42YDR235W UGA2P38067 497 aa2.38□□□□□ -2.03
PRP42YDR235W SEC5P89102 971 aa2.38□□□□□ -2.03
PRP42YDR235W RNT1Q02555 471 aa2.38□□□□□ -2.03
PRP42YDR235W COQ11Q05892 277 aa2.38□□□□□ -2.03
PRP42YDR235W CAD1P24813 409 aaKnown RBP2.37□□□□□ -2.03
PRP42YDR235W ERP5P38819 212 aa2.37□□□□□ -2.03
PRP42YDR235W PIC2P40035 300 aa2.37□□□□□ -2.03
PRP42YDR235W GLO1P50107 326 aa2.37□□□□□ -2.03
PRP42YDR235W IMO32P53219 342 aa2.37□□□□□ -2.03
PRP42YDR235W TOS4Q06266 489 aa2.37□□□□□ -2.03
PRP42YDR235W GUP2Q08929 609 aa2.37□□□□□ -2.03
PRP42YDR235W OXR1Q08952 273 aa2.37□□□□□ -2.03
PRP42YDR235W BNR1P40450 1375 aa2.36□□□□□ -2.03
PRP42YDR235W PHO4P07270 312 aaKnown RBP2.36□□□□□ -2.03
PRP42YDR235W PPZ2P33329 710 aa2.36□□□□□ -2.03
PRP42YDR235W LEO1P38439 464 aa2.36□□□□□ -2.03
PRP42YDR235W MXR1P40029 184 aa2.36□□□□□ -2.03
PRP42YDR235W SDS3P40505 327 aa2.36□□□□□ -2.03
PRP42YDR235W XYL2Q07993 356 aa2.36□□□□□ -2.03
PRP42YDR235W MSL5Q12186 476 aaKnown RBP RIP-Chip data2.36□□□□□ -2.03not detected
PRP42YDR235W YNL162W-AQ3E7A8 72 aa2.36□□□□□ -2.03
PRP42YDR235W PPR1P07272 904 aaPredicted RBP2.35□□□□□ -2.03
PRP42YDR235W NCS6P53088 359 aa2.35□□□□□ -2.03
PRP42YDR235W YGR012WP53206 393 aa2.35□□□□□ -2.03
PRP42YDR235W ACM1Q08981 209 aa2.35□□□□□ -2.03
PRP42YDR235W TRP4P07285 380 aaPredicted RBP2.35□□□□□ -2.03
PRP42YDR235W ALG7P07286 448 aa2.35□□□□□ -2.03
PRP42YDR235W SPE1P08432 466 aa2.35□□□□□ -2.03
PRP42YDR235W SYP1P25623 870 aaKnown RBP2.35□□□□□ -2.03
PRP42YDR235W RIX1P38883 763 aaPredicted RBP2.35□□□□□ -2.03
PRP42YDR235W HBT1Q07653 1046 aaKnown RBP2.35□□□□□ -2.03
PRP42YDR235W MRH1Q12117 320 aaPredicted RBP2.35□□□□□ -2.03
PRP42YDR235W THS1P04801 734 aaKnown RBP2.34□□□□□ -2.04
PRP42YDR235W TUB1P09733 447 aaKnown RBP2.34□□□□□ -2.04
PRP42YDR235W GEM1P39722 662 aa2.34□□□□□ -2.04
PRP42YDR235W CNN1P43618 361 aa2.34□□□□□ -2.04
PRP42YDR235W ENT3P47160 408 aa2.34□□□□□ -2.04
PRP42YDR235W SIW14P53965 281 aa2.34□□□□□ -2.04
PRP42YDR235W OSW2Q12202 724 aa2.34□□□□□ -2.04
PRP42YDR235W SUT2Q12286 268 aa2.34□□□□□ -2.04
PRP42YDR235W YBL113CQ7M4S9 792 aa2.34□□□□□ -2.04
PRP42YDR235W RPL11AP0C0W9 174 aaKnown RBP2.33□□□□□ -2.04
PRP42YDR235W FAA3P39002 694 aa2.33□□□□□ -2.04
PRP42YDR235W URM1P40554 99 aaPredicted RBP2.33□□□□□ -2.04
PRP42YDR235W RPL11BQ3E757 174 aaPredicted RBP2.33□□□□□ -2.04
PRP42YDR235W GFA1P14742 717 aaKnown RBP2.32□□□□□ -2.04
PRP42YDR235W DBP5P20449 482 aaKnown RBP2.32□□□□□ -2.04
PRP42YDR235W SLA2P33338 968 aa2.32□□□□□ -2.04
PRP42YDR235W GEF1P37020 779 aa2.32□□□□□ -2.04
PRP42YDR235W YAP1801P38856 637 aa2.32□□□□□ -2.04
PRP42YDR235W CCC2P38995 1004 aa2.32□□□□□ -2.04
PRP42YDR235W MPH1P40562 993 aa2.32□□□□□ -2.04
PRP42YDR235W PSP2P50109 593 aaKnown RBP2.32□□□□□ -2.04
PRP42YDR235W CDA1Q06702 301 aa2.32□□□□□ -2.04
PRP42YDR235W HXK1P04806 485 aaKnown RBP2.31□□□□□ -2.04
PRP42YDR235W TDP1P38319 544 aa2.31□□□□□ -2.04
PRP42YDR235W SCS3P53012 380 aa2.31□□□□□ -2.04
PRP42YDR235W THI7Q05998 598 aa2.31□□□□□ -2.04
PRP42YDR235W TRM13Q12383 476 aa2.31□□□□□ -2.04
PRP42YDR235W HSF1P10961 833 aa2.31□□□□□ -2.04
PRP42YDR235W DBP2P24783 546 aaKnown RBP2.31□□□□□ -2.04
PRP42YDR235W SEC8P32855 1065 aa2.31□□□□□ -2.04
PRP42YDR235W SRP101P32916 621 aa2.31□□□□□ -2.04
PRP42YDR235W ATG19P35193 415 aa2.31□□□□□ -2.04
PRP42YDR235W MTC3P53077 123 aa2.31□□□□□ -2.04
PRP42YDR235W WHI4Q07655 649 aaKnown RBP2.31□□□□□ -2.04
PRP42YDR235W ILV6P25605 309 aaKnown RBP2.3□□□□□ -2.04
PRP42YDR235W FLO10P36170 1169 aa2.3□□□□□ -2.04
PRP42YDR235W YHL017WP38745 532 aa2.3□□□□□ -2.04
PRP42YDR235W HXT13P39924 564 aa2.3□□□□□ -2.04
PRP42YDR235W HXT17P53631 564 aa2.3□□□□□ -2.04
PRP42YDR235W HXT15P54854 567 aa2.3□□□□□ -2.04
PRP42YDR235W GNT1Q12096 491 aa2.3□□□□□ -2.04
PRP42YDR235W PRE9P23638 258 aaKnown RBP2.29□□□□□ -2.04
PRP42YDR235W PPS1P38148 807 aa2.29□□□□□ -2.04
PRP42YDR235W HCA4P20448 770 aaKnown RBP2.28□□□□□ -2.04
PRP42YDR235W TAH11P47112 604 aa2.28□□□□□ -2.04
PRP42YDR235W MCM7P38132 845 aa2.28□□□□□ -2.05
PRP42YDR235W ECM21P38167 1117 aaKnown RBP2.28□□□□□ -2.05
PRP42YDR235W MRPS18P42847 217 aa2.28□□□□□ -2.05
PRP42YDR235W DAS1P47005 663 aa2.28□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 99.1 ms