RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	PRT1	P06103	763 aa	Known RBP	4.99	□□□□□ -1.61
CDC9	YDL164C	RAD18	P10862	487 aa		4.99	□□□□□ -1.61
CDC9	YDL164C	GFA1	P14742	717 aa	Known RBP	4.99	□□□□□ -1.61
CDC9	YDL164C	MET8	P15807	274 aa		4.99	□□□□□ -1.61
CDC9	YDL164C	IRE1	P32361	1115 aa		4.99	□□□□□ -1.61
CDC9	YDL164C	DHR2	P36009	735 aa	Predicted RBP	4.99	□□□□□ -1.61
CDC9	YDL164C	RAT1	Q02792	1006 aa	Known RBP	4.99	□□□□□ -1.61
CDC9	YDL164C	SXM1	Q04175	944 aa	Known RBP	4.99	□□□□□ -1.61
CDC9	YDL164C	ECM38	Q05902	660 aa	Predicted RBP	4.99	□□□□□ -1.61
CDC9	YDL164C	YDL124W	Q07551	312 aa	Known RBP	4.99	□□□□□ -1.61
CDC9	YDL164C	PSR2	Q07949	397 aa		4.99	□□□□□ -1.61
CDC9	YDL164C	NEW1	Q08972	1196 aa	Known RBP	4.99	□□□□□ -1.61
CDC9	YDL164C	PSH1	Q12161	406 aa		4.99	□□□□□ -1.61
CDC9	YDL164C	RPS21A	P0C0V8	87 aa	Known RBP	4.98	□□□□□ -1.61
CDC9	YDL164C	SAN1	P22470	610 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	DYS1	P38791	387 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	GEM1	P39722	662 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	VTC2	P43585	828 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	YGL176C	P46945	554 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	FRK1	Q03002	865 aa	Predicted RBP	4.98	□□□□□ -1.61
CDC9	YDL164C	ARA2	Q04212	335 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	YDR286C	Q05530	114 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	CHS3	P29465	1165 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	SPT16	P32558	1035 aa	Known RBP	4.98	□□□□□ -1.61
CDC9	YDL164C	SPC29	P33419	253 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	MUD2	P36084	527 aa	Known RBP	4.98	□□□□□ -1.61
CDC9	YDL164C	BCD1	P38772	366 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	TPA1	P40032	644 aa	Known RBP	4.98	□□□□□ -1.61
CDC9	YDL164C	GTR1	Q00582	310 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	ECM9	Q02202	377 aa		4.98	□□□□□ -1.61
CDC9	YDL164C	LCB5	Q06147	687 aa	Known RBP	4.98	□□□□□ -1.61
CDC9	YDL164C	PGA3	Q12746	312 aa	Known RBP	4.98	□□□□□ -1.61
CDC9	YDL164C	CYB2	P00175	591 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	PRP19	P32523	503 aa	Known RBP	4.97	□□□□□ -1.61
CDC9	YDL164C	TFC3	P34111	1160 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	HXT6	P39003	570 aa	Known RBP	4.97	□□□□□ -1.61
CDC9	YDL164C	HXT7	P39004	570 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	GYP8	P43570	497 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	TAF11	Q04226	346 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	TFC6	Q06339	672 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	BI4	P03879	638 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	DAT1	P13483	248 aa	Known RBP	4.97	□□□□□ -1.61
CDC9	YDL164C	AEP2	P22136	580 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	PET10	P36139	283 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	CKB2	P38930	258 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	DOT6	P40059	670 aa	Known RBP	4.97	□□□□□ -1.61
CDC9	YDL164C	TAD1	P53065	400 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	AIM14	P53109	570 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	PEX13	P80667	386 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	PKH1	Q03407	766 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	AOS1	Q06624	347 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	YPR071W	Q12346	211 aa		4.97	□□□□□ -1.61
CDC9	YDL164C	DPH2	P32461	534 aa		4.96	□□□□□ -1.62
CDC9	YDL164C	ANP1	P32629	500 aa		4.96	□□□□□ -1.62
CDC9	YDL164C	PTH2	P34222	208 aa		4.96	□□□□□ -1.62
CDC9	YDL164C	GIP1	P38229	639 aa		4.96	□□□□□ -1.62
CDC9	YDL164C	BIT2	P38346	545 aa		4.96	□□□□□ -1.62
CDC9	YDL164C	SAH1	P39954	449 aa	Known RBP	4.96	□□□□□ -1.62
CDC9	YDL164C	PHM6	Q05637	104 aa		4.96	□□□□□ -1.62
CDC9	YDL164C	TOM70	P07213	617 aa	Known RBP	4.95	□□□□□ -1.62
CDC9	YDL164C	AAC3	P18238	307 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	PRP9	P19736	530 aa	Known RBP	4.95	□□□□□ -1.62
CDC9	YDL164C	EXO5	P38289	585 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	MPH1	P40562	993 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	RSM26	P47141	266 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	SGM1	P47166	707 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	SSL2	Q00578	843 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	SAS4	Q04003	481 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	CDC45	Q08032	650 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	YTM1	Q12024	460 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC9	YDL164C	SEC18	P18759	758 aa	Known RBP	4.95	□□□□□ -1.62
CDC9	YDL164C	MCD4	P36051	919 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	SSN3	P39073	555 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	YIL165C	P40446	119 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	GPI8	P49018	411 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	YNL058C	P53947	316 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	SPN1	Q06505	410 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC9	YDL164C	YOR296W	Q08748	1289 aa		4.95	□□□□□ -1.62
CDC9	YDL164C	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-DR6	P0CX70	440 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-ER1	P0CX71	440 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-LR2	P0CX72	440 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-PL	P0CX73	440 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-JR1	P0CX74	440 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-LR3	P0CX75	440 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-ML2	P0CX76	440 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	ATP12	P22135	325 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	AFG2	P32794	780 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	YKL133C	P36066	463 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	RXT2	P38255	430 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	DUN1	P39009	513 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	FIR1	P40020	876 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	CCT5	P40413	562 aa	Known RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	GZF3	P42944	551 aa	Known RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	PUS5	Q06244	254 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-GR1	Q12085	440 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	YOL114C	Q12322	202 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	TY1A-OL	Q92392	440 aa	Known RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	HVG1	P0CE11	249 aa		4.94	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 24.2 ms