RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CCDC146Q8IYE0 955 aa23.98■■□□□ 1.43
CLN3-259ENST00000637551 C4AP0C0L4 1744 aa23.98■■□□□ 1.43
CLN3-259ENST00000637551 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.97■■□□□ 1.43
CLN3-259ENST00000637551 CYP19A1P11511 503 aaPredicted RBP23.97■■□□□ 1.43
CLN3-259ENST00000637551 CCDC27Q2M243 656 aa23.97■■□□□ 1.43
CLN3-259ENST00000637551 COL23A1Q86Y22 540 aaPredicted RBP23.97■■□□□ 1.43
CLN3-259ENST00000637551 CCDC87Q9NVE4 849 aa23.97■■□□□ 1.43
CLN3-259ENST00000637551 GOLGB1Q14789 3259 aaKnown RBP23.96■■□□□ 1.43
CLN3-259ENST00000637551 CCER2I3L3R5 266 aa23.96■■□□□ 1.43
CLN3-259ENST00000637551 GPR162Q16538 588 aa23.96■■□□□ 1.43
CLN3-259ENST00000637551 SNRPA1P09661 255 aaKnown RBP23.95■■□□□ 1.42
CLN3-259ENST00000637551 DNAJC10Q8IXB1 793 aa23.95■■□□□ 1.42
CLN3-259ENST00000637551 TRIM35Q9UPQ4 493 aa23.95■■□□□ 1.42
CLN3-259ENST00000637551 APAF1O14727 1248 aa23.93■■□□□ 1.42
CLN3-259ENST00000637551 TRAPPC3LQ5T215 181 aa23.93■■□□□ 1.42
CLN3-259ENST00000637551 INTS5Q6P9B9 1019 aaKnown RBP23.93■■□□□ 1.42
CLN3-259ENST00000637551 SOS1Q07889 1333 aaPredicted RBP23.92■■□□□ 1.42
CLN3-259ENST00000637551 POLD1P28340 1107 aa23.91■■□□□ 1.42
CLN3-259ENST00000637551 CHL1O00533 1208 aa23.9■■□□□ 1.42
CLN3-259ENST00000637551 RGL2O15211 777 aa23.9■■□□□ 1.42
CLN3-259ENST00000637551 CFAP44Q96MT7 982 aa23.9■■□□□ 1.42
CLN3-259ENST00000637551 IL6STP40189 918 aaPredicted RBP23.89■■□□□ 1.41
CLN3-259ENST00000637551 EIF4A1P60842 406 aaKnown RBP23.89■■□□□ 1.41
CLN3-259ENST00000637551 AMIGO3Q86WK7 504 aa23.89■■□□□ 1.41
CLN3-259ENST00000637551 THUMPD2Q9BTF0 503 aaKnown RBP23.89■■□□□ 1.41
CLN3-259ENST00000637551 TSPYL4Q9UJ04 414 aa23.89■■□□□ 1.41
CLN3-259ENST00000637551 RRP7AQ9Y3A4 280 aaKnown RBP23.89■■□□□ 1.41
CLN3-259ENST00000637551 ERBB4Q15303 1308 aa23.88■■□□□ 1.41
CLN3-259ENST00000637551 A0A087WZG4 1122 aa23.88■■□□□ 1.41
CLN3-259ENST00000637551 COL15A1P39059 1388 aa23.88■■□□□ 1.41
CLN3-259ENST00000637551 KCNQ3O43525 872 aa23.87■■□□□ 1.41
CLN3-259ENST00000637551 HOXB7P09629 217 aa23.87■■□□□ 1.41
CLN3-259ENST00000637551 RFC4P35249 363 aa23.87■■□□□ 1.41
CLN3-259ENST00000637551 NEUROD2Q15784 382 aa23.87■■□□□ 1.41
CLN3-259ENST00000637551 NLGN1Q8N2Q7 840 aa23.87■■□□□ 1.41
CLN3-259ENST00000637551 ARHGEF1Q92888 912 aaKnown RBP23.87■■□□□ 1.41
CLN3-259ENST00000637551 IFT57Q9NWB7 429 aa23.87■■□□□ 1.41
CLN3-259ENST00000637551 IL16Q14005 1332 aa23.86■■□□□ 1.41
CLN3-259ENST00000637551 MSH5O43196 834 aa23.86■■□□□ 1.41
CLN3-259ENST00000637551 PHF14O94880 888 aa23.86■■□□□ 1.41
CLN3-259ENST00000637551 EIF5P55010 431 aaKnown RBP23.86■■□□□ 1.41
CLN3-259ENST00000637551 ZBTB1Q9Y2K1 713 aa23.86■■□□□ 1.41
CLN3-259ENST00000637551 SCN7AQ01118 1682 aa23.86■■□□□ 1.41
CLN3-259ENST00000637551 USP42Q9H9J4 1324 aaKnown RBP23.85■■□□□ 1.41
CLN3-259ENST00000637551 ZNF853P0CG23 659 aa23.85■■□□□ 1.41
CLN3-259ENST00000637551 GNAI1P63096 354 aa23.85■■□□□ 1.41
CLN3-259ENST00000637551 DIEXFQ68CQ4 756 aaKnown RBP23.84■■□□□ 1.41
CLN3-259ENST00000637551 CHMP4AQ9BY43 222 aa23.83■■□□□ 1.41
CLN3-259ENST00000637551 NARFQ9UHQ1 456 aa23.83■■□□□ 1.41
CLN3-259ENST00000637551 BCORQ6W2J9 1755 aa23.82■■□□□ 1.4
CLN3-259ENST00000637551 GYS1P13807 737 aa23.81■■□□□ 1.4
CLN3-259ENST00000637551 NPM2Q86SE8 214 aaKnown RBP23.81■■□□□ 1.4
CLN3-259ENST00000637551 WWC1Q8IX03 1113 aa23.81■■□□□ 1.4
CLN3-259ENST00000637551 PELP1Q8IZL8 1130 aaKnown RBP23.81■■□□□ 1.4
CLN3-259ENST00000637551 MIS18AQ9NYP9 233 aa23.81■■□□□ 1.4
CLN3-259ENST00000637551 USP16Q9Y5T5 823 aa23.81■■□□□ 1.4
CLN3-259ENST00000637551 ZPR1O75312 459 aa23.8■■□□□ 1.4
CLN3-259ENST00000637551 KLHL34Q8N239 644 aa23.8■■□□□ 1.4
CLN3-259ENST00000637551 KIF13BQ9NQT8 1826 aa23.8■■□□□ 1.4
CLN3-259ENST00000637551 WDR63Q8IWG1 891 aa23.79■■□□□ 1.4
CLN3-259ENST00000637551 CANXP27824 592 aaKnown RBP23.77■■□□□ 1.4
CLN3-259ENST00000637551 FAM9BQ8IZU0 186 aa23.77■■□□□ 1.4
CLN3-259ENST00000637551 NLGN2Q8NFZ4 835 aa23.77■■□□□ 1.4
CLN3-259ENST00000637551 A1BGP04217 495 aa23.76■■□□□ 1.39
CLN3-259ENST00000637551 CD2APQ9Y5K6 639 aa23.76■■□□□ 1.39
CLN3-259ENST00000637551 CLEC4GQ6UXB4 293 aa23.75■■□□□ 1.39
CLN3-259ENST00000637551 MBIPQ9NS73 344 aa23.75■■□□□ 1.39
CLN3-259ENST00000637551 NRXN2Q9P2S2 1712 aa23.75■■□□□ 1.39
CLN3-259ENST00000637551 PRAMEF22A3QJZ6 481 aa23.74■■□□□ 1.39
CLN3-259ENST00000637551 GRIN3BO60391 1043 aa23.74■■□□□ 1.39
CLN3-259ENST00000637551 YBX3P16989 372 aaKnown RBP eCLIP23.74■■□□□ 1.39
CLN3-259ENST00000637551 MSL1Q68DK7 614 aa23.73■■□□□ 1.39
CLN3-259ENST00000637551 NBPF26B4DH59 902 aa23.72■■□□□ 1.39
CLN3-259ENST00000637551 MMP10P09238 476 aa23.72■■□□□ 1.39
CLN3-259ENST00000637551 NBPF10Q6P3W6 841 aaKnown RBP23.72■■□□□ 1.39
CLN3-259ENST00000637551 SMIM5Q71RC9 77 aa23.72■■□□□ 1.39
CLN3-259ENST00000637551 NBPF15Q8N660 670 aa23.72■■□□□ 1.39
CLN3-259ENST00000637551 ZNF652Q9Y2D9 606 aa23.72■■□□□ 1.39
CLN3-259ENST00000637551 CACNA1FO60840 1977 aa23.71■■□□□ 1.39
CLN3-259ENST00000637551 C10orf71Q711Q0 1435 aa23.71■■□□□ 1.39
CLN3-259ENST00000637551 ATP10DQ9P241 1426 aa23.71■■□□□ 1.39
CLN3-259ENST00000637551 TM4SF1P30408 202 aa23.71■■□□□ 1.39
CLN3-259ENST00000637551 USPL1Q5W0Q7 1092 aa23.71■■□□□ 1.39
CLN3-259ENST00000637551 ERVV-1B6SEH8 477 aa23.7■■□□□ 1.38
CLN3-259ENST00000637551 HSPA6P17066 643 aa23.7■■□□□ 1.38
CLN3-259ENST00000637551 DZIP3Q86Y13 1208 aaKnown RBP23.7■■□□□ 1.38
CLN3-259ENST00000637551 SRP68Q9UHB9 627 aaKnown RBP23.7■■□□□ 1.38
CLN3-259ENST00000637551 LAS1LQ9Y4W2 734 aaKnown RBP23.7■■□□□ 1.38
CLN3-259ENST00000637551 PARP3Q9Y6F1 533 aa23.7■■□□□ 1.38
CLN3-259ENST00000637551 ZNF521Q96K83 1311 aa23.69■■□□□ 1.38
CLN3-259ENST00000637551 CAMTA2O94983 1202 aa23.69■■□□□ 1.38
CLN3-259ENST00000637551 FKBP8Q14318 412 aa23.69■■□□□ 1.38
CLN3-259ENST00000637551 BCL2L12Q9HB09 334 aa23.69■■□□□ 1.38
CLN3-259ENST00000637551 CARMIL3Q8ND23 1372 aa23.67■■□□□ 1.38
CLN3-259ENST00000637551 LRP10Q7Z4F1 713 aa23.67■■□□□ 1.38
CLN3-259ENST00000637551 DDX21Q9NR30 783 aaKnown RBP eCLIP23.67■■□□□ 1.38
CLN3-259ENST00000637551 AFDNP55196 1824 aaKnown RBP23.67■■□□□ 1.38
CLN3-259ENST00000637551 DUSP27Q5VZP5 1158 aa23.66■■□□□ 1.38
CLN3-259ENST00000637551 DBF4Q9UBU7 674 aaPredicted RBP23.66■■□□□ 1.38
CLN3-259ENST00000637551 NUP98P52948 1817 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms