RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	CYP19A1	P11511	503 aa	Predicted RBP	28.47	■■■□□ 2.15
LTBP4-227	ENST00000600026	TSR2	Q969E8	191 aa	Known RBP	28.47	■■■□□ 2.15
LTBP4-227	ENST00000600026	TEX13A	Q9BXU3	409 aa	Predicted RBP	28.47	■■■□□ 2.15
LTBP4-227	ENST00000600026	GIGYF1	O75420	1035 aa	Predicted RBP	28.46	■■■□□ 2.15
LTBP4-227	ENST00000600026	MYH16	Q9H6N6	1097 aa		28.46	■■■□□ 2.15
LTBP4-227	ENST00000600026	SPINK5	Q9NQ38	1064 aa	Predicted RBP	28.46	■■■□□ 2.15
LTBP4-227	ENST00000600026	CASZ1	Q86V15	1759 aa		28.46	■■■□□ 2.15
LTBP4-227	ENST00000600026	CRKL	P46109	303 aa	Known RBP	28.45	■■■□□ 2.14
LTBP4-227	ENST00000600026	SLFN5	Q08AF3	891 aa		28.45	■■■□□ 2.14
LTBP4-227	ENST00000600026	KRT24	Q2M2I5	525 aa		28.45	■■■□□ 2.14
LTBP4-227	ENST00000600026	USP16	Q9Y5T5	823 aa		28.45	■■■□□ 2.14
LTBP4-227	ENST00000600026	FANCI	Q9NVI1	1328 aa		28.44	■■■□□ 2.14
LTBP4-227	ENST00000600026	RC3H1	Q5TC82	1133 aa	Known RBP	28.44	■■■□□ 2.14
LTBP4-227	ENST00000600026	CDCA7L	Q96GN5	454 aa		28.44	■■■□□ 2.14
LTBP4-227	ENST00000600026	GNPAT	O15228	680 aa		28.43	■■■□□ 2.14
LTBP4-227	ENST00000600026	STARD3NL	O95772	234 aa		28.43	■■■□□ 2.14
LTBP4-227	ENST00000600026	CCDC87	Q9NVE4	849 aa		28.43	■■■□□ 2.14
LTBP4-227	ENST00000600026	TFCP2L1	Q9NZI6	479 aa		28.43	■■■□□ 2.14
LTBP4-227	ENST00000600026	C4A	P0C0L4	1744 aa		28.43	■■■□□ 2.14
LTBP4-227	ENST00000600026	INTS5	Q6P9B9	1019 aa	Known RBP	28.42	■■■□□ 2.14
LTBP4-227	ENST00000600026	AMIGO3	Q86WK7	504 aa		28.41	■■■□□ 2.14
LTBP4-227	ENST00000600026	ZBTB1	Q9Y2K1	713 aa		28.41	■■■□□ 2.14
LTBP4-227	ENST00000600026	PNPLA7	Q6ZV29	1317 aa		28.41	■■■□□ 2.14
LTBP4-227	ENST00000600026	RPS6KA4	O75676	772 aa		28.38	■■■□□ 2.13
LTBP4-227	ENST00000600026	SMIM5	Q71RC9	77 aa		28.38	■■■□□ 2.13
LTBP4-227	ENST00000600026	RTCB	Q9Y3I0	505 aa	Known RBP	28.38	■■■□□ 2.13
LTBP4-227	ENST00000600026	PHF14	O94880	888 aa		28.37	■■■□□ 2.13
LTBP4-227	ENST00000600026	A1BG	P04217	495 aa		28.37	■■■□□ 2.13
LTBP4-227	ENST00000600026	HOXB7	P09629	217 aa		28.37	■■■□□ 2.13
LTBP4-227	ENST00000600026	SSFA2	P28290	1259 aa		28.37	■■■□□ 2.13
LTBP4-227	ENST00000600026	DUSP27	Q5VZP5	1158 aa		28.37	■■■□□ 2.13
LTBP4-227	ENST00000600026	TRMT2A	Q8IZ69	625 aa	Known RBP	28.37	■■■□□ 2.13
LTBP4-227	ENST00000600026	SOS1	Q07889	1333 aa	Predicted RBP	28.37	■■■□□ 2.13
LTBP4-227	ENST00000600026	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	28.36	■■■□□ 2.13
LTBP4-227	ENST00000600026	CANX	P27824	592 aa	Known RBP	28.36	■■■□□ 2.13
LTBP4-227	ENST00000600026	C8orf58	Q8NAV2	365 aa		28.36	■■■□□ 2.13
LTBP4-227	ENST00000600026	ELL2	O00472	640 aa	Predicted RBP	28.34	■■■□□ 2.13
LTBP4-227	ENST00000600026	EIF2S2	P20042	333 aa	Known RBP	28.34	■■■□□ 2.13
LTBP4-227	ENST00000600026	PIP4K2A	P48426	406 aa	Predicted RBP	28.34	■■■□□ 2.13
LTBP4-227	ENST00000600026	PDGFD	Q9GZP0	370 aa	Predicted RBP	28.34	■■■□□ 2.13
LTBP4-227	ENST00000600026	COL23A1	Q86Y22	540 aa	Predicted RBP	28.33	■■■□□ 2.13
LTBP4-227	ENST00000600026	TSPYL6	Q8N831	410 aa		28.33	■■■□□ 2.13
LTBP4-227	ENST00000600026	FLAD1	Q8NFF5	587 aa		28.33	■■■□□ 2.13
LTBP4-227	ENST00000600026	COL15A1	P39059	1388 aa		28.33	■■■□□ 2.13
LTBP4-227	ENST00000600026	NBPF26	B4DH59	902 aa		28.32	■■■□□ 2.12
LTBP4-227	ENST00000600026	ADRA2B	P18089	450 aa		28.32	■■■□□ 2.12
LTBP4-227	ENST00000600026	EXOSC9	Q06265	439 aa	Known RBP	28.32	■■■□□ 2.12
LTBP4-227	ENST00000600026	NBPF10	Q6P3W6	841 aa	Known RBP	28.32	■■■□□ 2.12
LTBP4-227	ENST00000600026	NBPF15	Q8N660	670 aa		28.32	■■■□□ 2.12
LTBP4-227	ENST00000600026	IL6ST	P40189	918 aa	Predicted RBP	28.31	■■■□□ 2.12
LTBP4-227	ENST00000600026	HDGFL1	Q5TGJ6	251 aa		28.31	■■■□□ 2.12
LTBP4-227	ENST00000600026	NECTIN2	Q92692	538 aa		28.31	■■■□□ 2.12
LTBP4-227	ENST00000600026	ERBB4	Q15303	1308 aa		28.31	■■■□□ 2.12
LTBP4-227	ENST00000600026	BCOR	Q6W2J9	1755 aa		28.3	■■■□□ 2.12
LTBP4-227	ENST00000600026	SCN7A	Q01118	1682 aa		28.3	■■■□□ 2.12
LTBP4-227	ENST00000600026	CENPB	P07199	599 aa	Predicted RBP	28.3	■■■□□ 2.12
LTBP4-227	ENST00000600026	EIF5	P55010	431 aa	Known RBP	28.3	■■■□□ 2.12
LTBP4-227	ENST00000600026	TWISTNB	Q3B726	338 aa	Predicted RBP	28.3	■■■□□ 2.12
LTBP4-227	ENST00000600026	TRAPPC3L	Q5T215	181 aa		28.3	■■■□□ 2.12
LTBP4-227	ENST00000600026	MSH5	O43196	834 aa		28.29	■■■□□ 2.12
LTBP4-227	ENST00000600026	ZNF330	Q9Y3S2	320 aa	Predicted RBP	28.29	■■■□□ 2.12
LTBP4-227	ENST00000600026	ARHGEF1	Q92888	912 aa	Known RBP	28.28	■■■□□ 2.12
LTBP4-227	ENST00000600026	COL24A1	Q17RW2	1714 aa		28.28	■■■□□ 2.12
LTBP4-227	ENST00000600026	MYL6B	P14649	208 aa		28.25	■■■□□ 2.11
LTBP4-227	ENST00000600026	RFC4	P35249	363 aa		28.25	■■■□□ 2.11
LTBP4-227	ENST00000600026	PDIA6	Q15084	440 aa		28.25	■■■□□ 2.11
LTBP4-227	ENST00000600026	PROSER3	Q2NL68	480 aa		28.25	■■■□□ 2.11
LTBP4-227	ENST00000600026	CHPF2	Q9P2E5	772 aa		28.25	■■■□□ 2.11
LTBP4-227	ENST00000600026	USP42	Q9H9J4	1324 aa	Known RBP	28.24	■■■□□ 2.11
LTBP4-227	ENST00000600026	ANXA1	P04083	346 aa		28.24	■■■□□ 2.11
LTBP4-227	ENST00000600026	YY1	P25490	414 aa		28.24	■■■□□ 2.11
LTBP4-227	ENST00000600026		A0A087WZG4	1122 aa		28.23	■■■□□ 2.11
LTBP4-227	ENST00000600026	VAMP4	O75379	141 aa		28.23	■■■□□ 2.11
LTBP4-227	ENST00000600026	NPM2	Q86SE8	214 aa	Known RBP	28.23	■■■□□ 2.11
LTBP4-227	ENST00000600026	SLC16A10	Q8TF71	515 aa		28.23	■■■□□ 2.11
LTBP4-227	ENST00000600026	DDX21	Q9NR30	783 aa	Known RBP eCLIP	28.23	■■■□□ 2.11
LTBP4-227	ENST00000600026	SRP68	Q9UHB9	627 aa	Known RBP	28.23	■■■□□ 2.11
LTBP4-227	ENST00000600026	ZBTB7A	O95365	584 aa		28.22	■■■□□ 2.11
LTBP4-227	ENST00000600026	CT47B1	P0C2W7	299 aa	Predicted RBP	28.22	■■■□□ 2.11
LTBP4-227	ENST00000600026	LRP10	Q7Z4F1	713 aa		28.22	■■■□□ 2.11
LTBP4-227	ENST00000600026	CACNA1F	O60840	1977 aa		28.22	■■■□□ 2.11
LTBP4-227	ENST00000600026	CCDC30	Q5VVM6	783 aa		28.21	■■■□□ 2.11
LTBP4-227	ENST00000600026	DBF4	Q9UBU7	674 aa	Predicted RBP	28.21	■■■□□ 2.11
LTBP4-227	ENST00000600026	NARF	Q9UHQ1	456 aa		28.21	■■■□□ 2.11
LTBP4-227	ENST00000600026	CHMP4A	Q9BY43	222 aa		28.2	■■■□□ 2.1
LTBP4-227	ENST00000600026	MTFR1L	Q9H019	292 aa		28.2	■■■□□ 2.1
LTBP4-227	ENST00000600026	USPL1	Q5W0Q7	1092 aa		28.19	■■■□□ 2.1
LTBP4-227	ENST00000600026	DZIP3	Q86Y13	1208 aa	Known RBP	28.19	■■■□□ 2.1
LTBP4-227	ENST00000600026	TBC1D2B	Q9UPU7	963 aa		28.19	■■■□□ 2.1
LTBP4-227	ENST00000600026	ZPR1	O75312	459 aa		28.18	■■■□□ 2.1
LTBP4-227	ENST00000600026	TCERG1	O14776	1098 aa	Known RBP	28.17	■■■□□ 2.1
LTBP4-227	ENST00000600026	GYS1	P13807	737 aa		28.17	■■■□□ 2.1
LTBP4-227	ENST00000600026	MSL1	Q68DK7	614 aa		28.17	■■■□□ 2.1
LTBP4-227	ENST00000600026	ARX	Q96QS3	562 aa		28.17	■■■□□ 2.1
LTBP4-227	ENST00000600026	NUP98	P52948	1817 aa		28.17	■■■□□ 2.1
LTBP4-227	ENST00000600026	CAMTA2	O94983	1202 aa		28.16	■■■□□ 2.1
LTBP4-227	ENST00000600026	STK31	Q9BXU1	1019 aa		28.16	■■■□□ 2.1
LTBP4-227	ENST00000600026	ATF5	Q9Y2D1	282 aa	Predicted RBP	28.16	■■■□□ 2.1
LTBP4-227	ENST00000600026	TTLL7	Q6ZT98	887 aa		28.15	■■■□□ 2.1
LTBP4-227	ENST00000600026	XAGE3	Q8WTP9	111 aa		28.15	■■■□□ 2.1

Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms