RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 CHL1O00533 1208 aa33.66■■■□□ 2.98
TRIM28-204ENST00000594806 MSH5O43196 834 aa33.66■■■□□ 2.98
TRIM28-204ENST00000594806 ZBTB7AO95365 584 aa33.66■■■□□ 2.98
TRIM28-204ENST00000594806 EIF4A1P60842 406 aaKnown RBP33.66■■■□□ 2.98
TRIM28-204ENST00000594806 PHF14O94880 888 aa33.65■■■□□ 2.98
TRIM28-204ENST00000594806 CFAP44Q96MT7 982 aa33.65■■■□□ 2.98
TRIM28-204ENST00000594806 AMIGO3Q86WK7 504 aa33.64■■■□□ 2.98
TRIM28-204ENST00000594806 IFT57Q9NWB7 429 aa33.61■■■□□ 2.97
TRIM28-204ENST00000594806 COL24A1Q17RW2 1714 aa33.61■■■□□ 2.97
TRIM28-204ENST00000594806 GIGYF1O75420 1035 aaPredicted RBP33.6■■■□□ 2.97
TRIM28-204ENST00000594806 GNAI1P63096 354 aa33.6■■■□□ 2.97
TRIM28-204ENST00000594806 WWC1Q8IX03 1113 aa33.6■■■□□ 2.97
TRIM28-204ENST00000594806 MIER1Q8N108 512 aa33.6■■■□□ 2.97
TRIM28-204ENST00000594806 ATF5Q9Y2D1 282 aaPredicted RBP33.6■■■□□ 2.97
TRIM28-204ENST00000594806 ZBTB1Q9Y2K1 713 aa33.6■■■□□ 2.97
TRIM28-204ENST00000594806 USP16Q9Y5T5 823 aa33.6■■■□□ 2.97
TRIM28-204ENST00000594806 SOS1Q07889 1333 aaPredicted RBP33.59■■■□□ 2.97
TRIM28-204ENST00000594806 RFC4P35249 363 aa33.59■■■□□ 2.97
TRIM28-204ENST00000594806 ARHGEF1Q92888 912 aaKnown RBP33.59■■■□□ 2.97
TRIM28-204ENST00000594806 LAS1LQ9Y4W2 734 aaKnown RBP33.59■■■□□ 2.97
TRIM28-204ENST00000594806 ZNF853P0CG23 659 aa33.58■■■□□ 2.97
TRIM28-204ENST00000594806 LAMB4A4D0S4 1761 aa33.57■■■□□ 2.96
TRIM28-204ENST00000594806 PTGER2P43116 358 aa33.56■■■□□ 2.96
TRIM28-204ENST00000594806 POLD1P28340 1107 aa33.55■■■□□ 2.96
TRIM28-204ENST00000594806 IL6STP40189 918 aaPredicted RBP33.55■■■□□ 2.96
TRIM28-204ENST00000594806 SMIM5Q71RC9 77 aa33.55■■■□□ 2.96
TRIM28-204ENST00000594806 SGIP1Q9BQI5 828 aa33.55■■■□□ 2.96
TRIM28-204ENST00000594806 IL16Q14005 1332 aa33.54■■■□□ 2.96
TRIM28-204ENST00000594806 A0A087WZG4 1122 aa33.54■■■□□ 2.96
TRIM28-204ENST00000594806 PRAMEF22A3QJZ6 481 aa33.54■■■□□ 2.96
TRIM28-204ENST00000594806 CANXP27824 592 aaKnown RBP33.54■■■□□ 2.96
TRIM28-204ENST00000594806 EIF5P55010 431 aaKnown RBP33.54■■■□□ 2.96
TRIM28-204ENST00000594806 C4AP0C0L4 1744 aa33.53■■■□□ 2.96
TRIM28-204ENST00000594806 COL15A1P39059 1388 aa33.53■■■□□ 2.96
TRIM28-204ENST00000594806 NPM2Q86SE8 214 aaKnown RBP33.53■■■□□ 2.96
TRIM28-204ENST00000594806 WDR63Q8IWG1 891 aa33.53■■■□□ 2.96
TRIM28-204ENST00000594806 A1BGP04217 495 aa33.52■■■□□ 2.96
TRIM28-204ENST00000594806 NLGN1Q8N2Q7 840 aa33.51■■■□□ 2.95
TRIM28-204ENST00000594806 MBIPQ9NS73 344 aa33.51■■■□□ 2.95
TRIM28-204ENST00000594806 PPP1R1BQ9UD71 204 aaPredicted RBP33.5■■■□□ 2.95
TRIM28-204ENST00000594806 USP42Q9H9J4 1324 aaKnown RBP33.5■■■□□ 2.95
TRIM28-204ENST00000594806 ZPR1O75312 459 aa33.49■■■□□ 2.95
TRIM28-204ENST00000594806 HOXB7P09629 217 aa33.49■■■□□ 2.95
TRIM28-204ENST00000594806 ERBB4Q15303 1308 aa33.49■■■□□ 2.95
TRIM28-204ENST00000594806 NARFQ9UHQ1 456 aa33.48■■■□□ 2.95
TRIM28-204ENST00000594806 GYS1P13807 737 aa33.46■■■□□ 2.95
TRIM28-204ENST00000594806 SALL2Q9Y467 1007 aaPredicted RBP33.46■■■□□ 2.95
TRIM28-204ENST00000594806 SENP3-EIF4A1A0A087X0R7 540 aa33.45■■■□□ 2.95
TRIM28-204ENST00000594806 MSL1Q68DK7 614 aa33.45■■■□□ 2.95
TRIM28-204ENST00000594806 ARXQ96QS3 562 aa33.45■■■□□ 2.95
TRIM28-204ENST00000594806 NBPF26B4DH59 902 aa33.42■■■□□ 2.94
TRIM28-204ENST00000594806 NBPF10Q6P3W6 841 aaKnown RBP33.42■■■□□ 2.94
TRIM28-204ENST00000594806 NBPF15Q8N660 670 aa33.42■■■□□ 2.94
TRIM28-204ENST00000594806 CHMP4AQ9BY43 222 aa33.42■■■□□ 2.94
TRIM28-204ENST00000594806 SRP68Q9UHB9 627 aaKnown RBP33.41■■■□□ 2.94
TRIM28-204ENST00000594806 ZNF330Q9Y3S2 320 aaPredicted RBP33.41■■■□□ 2.94
TRIM28-204ENST00000594806 DUSP27Q5VZP5 1158 aa33.4■■■□□ 2.94
TRIM28-204ENST00000594806 USPL1Q5W0Q7 1092 aa33.4■■■□□ 2.94
TRIM28-204ENST00000594806 RGL2O15211 777 aa33.39■■■□□ 2.94
TRIM28-204ENST00000594806 EIF2S2P20042 333 aaKnown RBP33.39■■■□□ 2.94
TRIM28-204ENST00000594806 KRT24Q2M2I5 525 aa33.38■■■□□ 2.93
TRIM28-204ENST00000594806 ZNF521Q96K83 1311 aa33.37■■■□□ 2.93
TRIM28-204ENST00000594806 PIP4K2AP48426 406 aaPredicted RBP33.37■■■□□ 2.93
TRIM28-204ENST00000594806 DZIP3Q86Y13 1208 aaKnown RBP33.37■■■□□ 2.93
TRIM28-204ENST00000594806 MMP10P09238 476 aa33.36■■■□□ 2.93
TRIM28-204ENST00000594806 FKBP8Q14318 412 aa33.36■■■□□ 2.93
TRIM28-204ENST00000594806 TBC1D2BQ9UPU7 963 aa33.36■■■□□ 2.93
TRIM28-204ENST00000594806 SRCAPQ6ZRS2 3230 aa33.34■■■□□ 2.93
TRIM28-204ENST00000594806 HDGFL1Q5TGJ6 251 aa33.34■■■□□ 2.93
TRIM28-204ENST00000594806 TSR2Q969E8 191 aaKnown RBP33.34■■■□□ 2.93
TRIM28-204ENST00000594806 MYH16Q9H6N6 1097 aa33.34■■■□□ 2.93
TRIM28-204ENST00000594806 SCN7AQ01118 1682 aa33.33■■■□□ 2.93
TRIM28-204ENST00000594806 CLEC4GQ6UXB4 293 aa33.33■■■□□ 2.93
TRIM28-204ENST00000594806 BCL2L12Q9HB09 334 aa33.33■■■□□ 2.93
TRIM28-204ENST00000594806 CAMTA2O94983 1202 aa33.32■■■□□ 2.92
TRIM28-204ENST00000594806 TM4SF1P30408 202 aa33.32■■■□□ 2.92
TRIM28-204ENST00000594806 GOLGA2Q08379 1002 aa33.32■■■□□ 2.92
TRIM28-204ENST00000594806 DDX21Q9NR30 783 aaKnown RBP eCLIP33.32■■■□□ 2.92
TRIM28-204ENST00000594806 PARP3Q9Y6F1 533 aa33.32■■■□□ 2.92
TRIM28-204ENST00000594806 MYL6BP14649 208 aa33.31■■■□□ 2.92
TRIM28-204ENST00000594806 PDIA6Q15084 440 aa33.31■■■□□ 2.92
TRIM28-204ENST00000594806 C8orf58Q8NAV2 365 aa33.31■■■□□ 2.92
TRIM28-204ENST00000594806 ZNF652Q9Y2D9 606 aa33.31■■■□□ 2.92
TRIM28-204ENST00000594806 BCORQ6W2J9 1755 aa33.31■■■□□ 2.92
TRIM28-204ENST00000594806 FANCIQ9NVI1 1328 aa33.3■■■□□ 2.92
TRIM28-204ENST00000594806 FHDC1Q9C0D6 1143 aaPredicted RBP33.3■■■□□ 2.92
TRIM28-204ENST00000594806 DBF4Q9UBU7 674 aaPredicted RBP33.3■■■□□ 2.92
TRIM28-204ENST00000594806 ERVV-1B6SEH8 477 aa33.28■■■□□ 2.92
TRIM28-204ENST00000594806 KIF6Q6ZMV9 814 aa33.28■■■□□ 2.92
TRIM28-204ENST00000594806 SYT17Q9BSW7 474 aa33.28■■■□□ 2.92
TRIM28-204ENST00000594806 CD2APQ9Y5K6 639 aa33.28■■■□□ 2.92
TRIM28-204ENST00000594806 ELL2O00472 640 aaPredicted RBP33.27■■■□□ 2.92
TRIM28-204ENST00000594806 LRP10Q7Z4F1 713 aa33.27■■■□□ 2.92
TRIM28-204ENST00000594806 NECTIN2Q92692 538 aa33.27■■■□□ 2.92
TRIM28-204ENST00000594806 NFIXQ14938 502 aa33.26■■■□□ 2.91
TRIM28-204ENST00000594806 TWISTNBQ3B726 338 aaPredicted RBP33.25■■■□□ 2.91
TRIM28-204ENST00000594806 CCDC30Q5VVM6 783 aa33.25■■■□□ 2.91
TRIM28-204ENST00000594806 SPINK5Q9NQ38 1064 aaPredicted RBP33.25■■■□□ 2.91
TRIM28-204ENST00000594806 HYPKQ9NX55 129 aa33.25■■■□□ 2.91
TRIM28-204ENST00000594806 CHPF2Q9P2E5 772 aa33.25■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms