RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SCN7AQ01118 1682 aa12.9□□□□□ -0.34
CLK3-220ENST00000567992 PRAMEF22A3QJZ6 481 aa12.9□□□□□ -0.34
CLK3-220ENST00000567992 CCDC87Q9NVE4 849 aa12.9□□□□□ -0.34
CLK3-220ENST00000567992 ZBTB1Q9Y2K1 713 aa12.9□□□□□ -0.34
CLK3-220ENST00000567992 RTCBQ9Y3I0 505 aaKnown RBP12.9□□□□□ -0.34
CLK3-220ENST00000567992 BCORQ6W2J9 1755 aa12.89□□□□□ -0.35
CLK3-220ENST00000567992 EIF4A1P60842 406 aaKnown RBP12.88□□□□□ -0.35
CLK3-220ENST00000567992 MSL1Q68DK7 614 aa12.88□□□□□ -0.35
CLK3-220ENST00000567992 ARHGEF1Q92888 912 aaKnown RBP12.88□□□□□ -0.35
CLK3-220ENST00000567992 COL15A1P39059 1388 aa12.88□□□□□ -0.35
CLK3-220ENST00000567992 TRAPPC3LQ5T215 181 aa12.87□□□□□ -0.35
CLK3-220ENST00000567992 TEX13AQ9BXU3 409 aaPredicted RBP12.87□□□□□ -0.35
CLK3-220ENST00000567992 BABAM1Q9NWV8 329 aa12.87□□□□□ -0.35
CLK3-220ENST00000567992 USP16Q9Y5T5 823 aa12.87□□□□□ -0.35
CLK3-220ENST00000567992 USP42Q9H9J4 1324 aaKnown RBP12.87□□□□□ -0.35
CLK3-220ENST00000567992 CHL1O00533 1208 aa12.86□□□□□ -0.35
CLK3-220ENST00000567992 STARD3NLO95772 234 aa12.86□□□□□ -0.35
CLK3-220ENST00000567992 SNRPA1P09661 255 aaKnown RBP12.86□□□□□ -0.35
CLK3-220ENST00000567992 TSPYL4Q9UJ04 414 aa12.86□□□□□ -0.35
CLK3-220ENST00000567992 SENP3-EIF4A1A0A087X0R7 540 aa12.85□□□□□ -0.35
CLK3-220ENST00000567992 GIGYF1O75420 1035 aaPredicted RBP12.85□□□□□ -0.35
CLK3-220ENST00000567992 ZNF853P0CG23 659 aa12.85□□□□□ -0.35
CLK3-220ENST00000567992 GYS1P13807 737 aa12.85□□□□□ -0.35
CLK3-220ENST00000567992 EIF5P55010 431 aaKnown RBP12.85□□□□□ -0.35
CLK3-220ENST00000567992 SRP68Q9UHB9 627 aaKnown RBP12.85□□□□□ -0.35
CLK3-220ENST00000567992 KIF13BQ9NQT8 1826 aa12.84□□□□□ -0.35
CLK3-220ENST00000567992 NBPF26B4DH59 902 aa12.84□□□□□ -0.35
CLK3-220ENST00000567992 A1BGP04217 495 aa12.84□□□□□ -0.35
CLK3-220ENST00000567992 CANXP27824 592 aaKnown RBP12.84□□□□□ -0.35
CLK3-220ENST00000567992 CCDC27Q2M243 656 aa12.84□□□□□ -0.35
CLK3-220ENST00000567992 NCBP3Q53F19 620 aaKnown RBP12.84□□□□□ -0.35
CLK3-220ENST00000567992 NBPF10Q6P3W6 841 aaKnown RBP12.84□□□□□ -0.35
CLK3-220ENST00000567992 NBPF15Q8N660 670 aa12.84□□□□□ -0.35
CLK3-220ENST00000567992 ARXQ96QS3 562 aa12.84□□□□□ -0.35
CLK3-220ENST00000567992 KIAA1551Q9HCM1 1747 aa12.84□□□□□ -0.35
CLK3-220ENST00000567992 CCER2I3L3R5 266 aa12.83□□□□□ -0.36
CLK3-220ENST00000567992 POLD1P28340 1107 aa12.83□□□□□ -0.36
CLK3-220ENST00000567992 RFC4P35249 363 aa12.83□□□□□ -0.36
CLK3-220ENST00000567992 IL6STP40189 918 aaPredicted RBP12.83□□□□□ -0.36
CLK3-220ENST00000567992 PIP4K2AP48426 406 aaPredicted RBP12.83□□□□□ -0.36
CLK3-220ENST00000567992 DIEXFQ68CQ4 756 aaKnown RBP12.83□□□□□ -0.36
CLK3-220ENST00000567992 FAM9BQ8IZU0 186 aa12.83□□□□□ -0.36
CLK3-220ENST00000567992 CFAP44Q96MT7 982 aa12.83□□□□□ -0.36
CLK3-220ENST00000567992 BCL2L12Q9HB09 334 aa12.83□□□□□ -0.36
CLK3-220ENST00000567992 PPP1R1BQ9UD71 204 aaPredicted RBP12.83□□□□□ -0.36
CLK3-220ENST00000567992 GOLGB1Q14789 3259 aaKnown RBP12.83□□□□□ -0.36
CLK3-220ENST00000567992 NRXN2Q9P2S2 1712 aa12.82□□□□□ -0.36
CLK3-220ENST00000567992 FKBP8Q14318 412 aa12.82□□□□□ -0.36
CLK3-220ENST00000567992 KRT24Q2M2I5 525 aa12.82□□□□□ -0.36
CLK3-220ENST00000567992 FHDC1Q9C0D6 1143 aaPredicted RBP12.82□□□□□ -0.36
CLK3-220ENST00000567992 MBIPQ9NS73 344 aa12.82□□□□□ -0.36
CLK3-220ENST00000567992 IFT57Q9NWB7 429 aa12.82□□□□□ -0.36
CLK3-220ENST00000567992 NARFQ9UHQ1 456 aa12.82□□□□□ -0.36
CLK3-220ENST00000567992 AFDNP55196 1824 aaKnown RBP12.82□□□□□ -0.36
CLK3-220ENST00000567992 USPL1Q5W0Q7 1092 aa12.81□□□□□ -0.36
CLK3-220ENST00000567992 WWC1Q8IX03 1113 aa12.81□□□□□ -0.36
CLK3-220ENST00000567992 UTRNP46939 3433 aa12.81□□□□□ -0.36
CLK3-220ENST00000567992 C10orf71Q711Q0 1435 aa12.8□□□□□ -0.36
CLK3-220ENST00000567992 MMP10P09238 476 aa12.8□□□□□ -0.36
CLK3-220ENST00000567992 DDR1Q08345 913 aa12.8□□□□□ -0.36
CLK3-220ENST00000567992 NLGN1Q8N2Q7 840 aa12.8□□□□□ -0.36
CLK3-220ENST00000567992 LAS1LQ9Y4W2 734 aaKnown RBP12.8□□□□□ -0.36
CLK3-220ENST00000567992 A0A087WZG4 1122 aa12.79□□□□□ -0.36
CLK3-220ENST00000567992 GNAI1P63096 354 aa12.79□□□□□ -0.36
CLK3-220ENST00000567992 CALD1Q05682 793 aaKnown RBP12.79□□□□□ -0.36
CLK3-220ENST00000567992 LRP10Q7Z4F1 713 aa12.79□□□□□ -0.36
CLK3-220ENST00000567992 MIER1Q8N108 512 aa12.79□□□□□ -0.36
CLK3-220ENST00000567992 SYT17Q9BSW7 474 aa12.79□□□□□ -0.36
CLK3-220ENST00000567992 ERBB4Q15303 1308 aa12.79□□□□□ -0.36
CLK3-220ENST00000567992 ZPR1O75312 459 aa12.78□□□□□ -0.36
CLK3-220ENST00000567992 CAMTA2O94983 1202 aa12.78□□□□□ -0.36
CLK3-220ENST00000567992 TM4SF1P30408 202 aa12.78□□□□□ -0.36
CLK3-220ENST00000567992 PDIA6Q15084 440 aa12.78□□□□□ -0.36
CLK3-220ENST00000567992 TBC1D2BQ9UPU7 963 aa12.78□□□□□ -0.36
CLK3-220ENST00000567992 ZNF330Q9Y3S2 320 aaPredicted RBP12.78□□□□□ -0.36
CLK3-220ENST00000567992 IL16Q14005 1332 aa12.78□□□□□ -0.36
CLK3-220ENST00000567992 ZNF521Q96K83 1311 aa12.78□□□□□ -0.36
CLK3-220ENST00000567992 NUP98P52948 1817 aa12.77□□□□□ -0.37
CLK3-220ENST00000567992 HOXB7P09629 217 aa12.77□□□□□ -0.37
CLK3-220ENST00000567992 PROSER3Q2NL68 480 aa12.77□□□□□ -0.37
CLK3-220ENST00000567992 NLGN2Q8NFZ4 835 aa12.77□□□□□ -0.37
CLK3-220ENST00000567992 BRCA1P38398 1863 aaKnown RBP12.76□□□□□ -0.37
CLK3-220ENST00000567992 POLRMTO00411 1230 aaKnown RBP12.76□□□□□ -0.37
CLK3-220ENST00000567992 NFIXQ14938 502 aa12.76□□□□□ -0.37
CLK3-220ENST00000567992 DZIP3Q86Y13 1208 aaKnown RBP12.76□□□□□ -0.37
CLK3-220ENST00000567992 TSR2Q969E8 191 aaKnown RBP12.76□□□□□ -0.37
CLK3-220ENST00000567992 SALL2Q9Y467 1007 aaPredicted RBP12.76□□□□□ -0.37
CLK3-220ENST00000567992 ANKRD36CQ5JPF3 1778 aa12.76□□□□□ -0.37
CLK3-220ENST00000567992 N4BP2Q86UW6 1770 aaPredicted RBP12.76□□□□□ -0.37
CLK3-220ENST00000567992 ANKRD31Q8N7Z5 1873 aa12.76□□□□□ -0.37
CLK3-220ENST00000567992 PXDNLA1KZ92 1463 aa12.75□□□□□ -0.37
CLK3-220ENST00000567992 EIF2S2P20042 333 aaKnown RBP12.75□□□□□ -0.37
CLK3-220ENST00000567992 DUSP27Q5VZP5 1158 aa12.75□□□□□ -0.37
CLK3-220ENST00000567992 WDR63Q8IWG1 891 aa12.75□□□□□ -0.37
CLK3-220ENST00000567992 KLHL34Q8N239 644 aa12.75□□□□□ -0.37
CLK3-220ENST00000567992 C8orf58Q8NAV2 365 aa12.75□□□□□ -0.37
CLK3-220ENST00000567992 SPINK5Q9NQ38 1064 aaPredicted RBP12.75□□□□□ -0.37
CLK3-220ENST00000567992 FANCIQ9NVI1 1328 aa12.75□□□□□ -0.37
CLK3-220ENST00000567992 CD2APQ9Y5K6 639 aa12.75□□□□□ -0.37
CLK3-220ENST00000567992 DLEC1Q9Y238 1755 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms