RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 BOLA2Q9H3K6 86 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 MKNK2Q9HBH9 465 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 USP25Q9UHP3 1055 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 ANAPC15P60006 121 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 TBC1D2Q9BYX2 928 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 CCDC175P0C221 793 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 TAF7Q15545 349 aaPredicted RBP15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 CCDC184Q52MB2 194 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 NUP88Q99567 741 aaPredicted RBP15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 NSD3Q9BZ95 1437 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 ERICH3Q5RHP9 1530 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 PRDM2Q13029 1718 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 ZNF213O14771 459 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 CBX1P83916 185 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 CETN1Q12798 172 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 STX1AQ16623 288 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 ALS2CR12Q96Q35 445 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 ZNF652Q9Y2D9 606 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 SLC12A7Q9Y666 1083 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 DCAF8L1A6NGE4 600 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 FSIP1Q8NA03 581 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 SSFA2P28290 1259 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 XPCQ01831 940 aaPredicted RBP15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 PIBF1Q8WXW3 757 aa15.28■□□□□ 0.04
CSPG4P11-201ENST00000560634 CCDC194A0A1B0GVG4 234 aa15.27■□□□□ 0.04
CSPG4P11-201ENST00000560634 KANK3Q6NY19 840 aa15.27■□□□□ 0.04
CSPG4P11-201ENST00000560634 MRC2Q9UBG0 1479 aa15.27■□□□□ 0.04
CSPG4P11-201ENST00000560634 MINDY4BA8MYZ0 360 aa15.27■□□□□ 0.04
CSPG4P11-201ENST00000560634 AMOTQ4VCS5 1084 aa15.27■□□□□ 0.04
CSPG4P11-201ENST00000560634 PRIMPOLQ96LW4 560 aa15.27■□□□□ 0.04
CSPG4P11-201ENST00000560634 POLR3DP05423 398 aaPredicted RBP15.27■□□□□ 0.03
CSPG4P11-201ENST00000560634 BMS1Q14692 1282 aaKnown RBP15.27■□□□□ 0.03
CSPG4P11-201ENST00000560634 NKTRP30414 1462 aaKnown RBP15.27■□□□□ 0.03
CSPG4P11-201ENST00000560634 AMPD3Q01432 767 aa15.27■□□□□ 0.03
CSPG4P11-201ENST00000560634 TDRD12Q587J7 1177 aaKnown RBP15.27■□□□□ 0.03
CSPG4P11-201ENST00000560634 CCDC178Q5BJE1 867 aa15.27■□□□□ 0.03
CSPG4P11-201ENST00000560634 BMP2KLQ5H9B9 411 aa15.27■□□□□ 0.03
CSPG4P11-201ENST00000560634 PPP4R3AQ6IN85 833 aa15.27■□□□□ 0.03
CSPG4P11-201ENST00000560634 EHBP1L1Q8N3D4 1523 aa15.26■□□□□ 0.03
CSPG4P11-201ENST00000560634 SSRP1Q08945 709 aaKnown RBP15.26■□□□□ 0.03
CSPG4P11-201ENST00000560634 NUDT16Q96DE0 195 aaKnown RBP15.26■□□□□ 0.03
CSPG4P11-201ENST00000560634 ZNF165P49910 485 aa15.26■□□□□ 0.03
CSPG4P11-201ENST00000560634 EVI5LQ96CN4 794 aa15.26■□□□□ 0.03
CSPG4P11-201ENST00000560634 PAXBP1Q9Y5B6 917 aa15.26■□□□□ 0.03
CSPG4P11-201ENST00000560634 ANKLE2Q86XL3 938 aa15.26■□□□□ 0.03
CSPG4P11-201ENST00000560634 CKAP2LQ8IYA6 745 aa15.26■□□□□ 0.03
CSPG4P11-201ENST00000560634 TROQ12816 1431 aaPredicted RBP15.26■□□□□ 0.03
CSPG4P11-201ENST00000560634 C16orf45Q96MC5 204 aaPredicted RBP15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 ARAP1Q96P48 1450 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 STX6O43752 255 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 SMARCA5O60264 1052 aaPredicted RBP15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 KLHL40Q2TBA0 621 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 FAM114A1Q8IWE2 563 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 CCDC150Q8NCX0 1101 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 EHBP1Q8NDI1 1231 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 PTPRCP08575 1304 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 DAPK1P53355 1430 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 IFIT5Q13325 482 aaKnown RBP15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 ZNF444Q8N0Y2 327 aaPredicted RBP15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 DNAAF4Q8WXU2 420 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 ECHDC1Q9NTX5 307 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 A0A087WZG4 1122 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 DYNC1I1O14576 645 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 UBE2HP62256 183 aa15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 CCDC12Q8WUD4 166 aaPredicted RBP15.25■□□□□ 0.03
CSPG4P11-201ENST00000560634 LRPPRCP42704 1394 aaKnown RBP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 GOLGA8AA7E2F4 631 aa15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 GOLGA8BA8MQT2 603 aa15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 MTIF2P46199 727 aaKnown RBP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 SPECC1LQ69YQ0 1117 aa15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 SNW1Q13573 536 aaKnown RBP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 TCP11L1Q9NUJ3 509 aa15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 TRMT1Q9NXH9 659 aaKnown RBP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 IFIT3O14879 490 aaKnown RBP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 HLTFQ14527 1009 aaKnown RBP eCLIP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 EFCAB5A4FU69 1503 aa15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 POLR3GO15318 223 aaPredicted RBP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 ADCY5O95622 1261 aa15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 GIGYF2Q6Y7W6 1299 aaKnown RBP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 CATIPQ7Z7H3 387 aa15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 CCDC85AQ96PX6 553 aaPredicted RBP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 DBF4Q9UBU7 674 aaPredicted RBP15.24■□□□□ 0.03
CSPG4P11-201ENST00000560634 IFT140Q96RY7 1462 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 NF2P35240 595 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 NLRP5P59047 1200 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 RNF187Q5TA31 235 aaPredicted RBP15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 TMC6Q7Z403 805 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 CRACR2BQ8N4Y2 399 aaPredicted RBP15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 HMG20BQ9P0W2 317 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 MCM10Q7L590 875 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 HYPKQ9NX55 129 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 SF3B2Q13435 895 aaKnown RBP15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 CCDC102BQ68D86 513 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 SLF2Q8IX21 1173 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 CPLX3Q8WVH0 158 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 CUL5Q93034 780 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 LRRC27Q9C0I9 530 aa15.23■□□□□ 0.03
CSPG4P11-201ENST00000560634 BAG4O95429 457 aaKnown RBP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms