RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 ZNF521Q96K83 1311 aa19.36■□□□□ 0.69
VIPAS39-210ENST00000557466 INTS5Q6P9B9 1019 aaKnown RBP19.36■□□□□ 0.69
VIPAS39-210ENST00000557466 SMIM5Q71RC9 77 aa19.36■□□□□ 0.69
VIPAS39-210ENST00000557466 PDGFDQ9GZP0 370 aaPredicted RBP19.36■□□□□ 0.69
VIPAS39-210ENST00000557466 CCDC87Q9NVE4 849 aa19.36■□□□□ 0.69
VIPAS39-210ENST00000557466 GIGYF1O75420 1035 aaPredicted RBP19.35■□□□□ 0.69
VIPAS39-210ENST00000557466 TEX13AQ9BXU3 409 aaPredicted RBP19.35■□□□□ 0.69
VIPAS39-210ENST00000557466 PHF14O94880 888 aa19.34■□□□□ 0.69
VIPAS39-210ENST00000557466 KRT24Q2M2I5 525 aa19.34■□□□□ 0.69
VIPAS39-210ENST00000557466 WDR63Q8IWG1 891 aa19.34■□□□□ 0.69
VIPAS39-210ENST00000557466 ZBTB1Q9Y2K1 713 aa19.34■□□□□ 0.69
VIPAS39-210ENST00000557466 USP16Q9Y5T5 823 aa19.34■□□□□ 0.69
VIPAS39-210ENST00000557466 COL24A1Q17RW2 1714 aa19.34■□□□□ 0.69
VIPAS39-210ENST00000557466 RPS6KA4O75676 772 aa19.33■□□□□ 0.68
VIPAS39-210ENST00000557466 STARD3NLO95772 234 aa19.33■□□□□ 0.68
VIPAS39-210ENST00000557466 SSFA2P28290 1259 aa19.33■□□□□ 0.68
VIPAS39-210ENST00000557466 COL23A1Q86Y22 540 aaPredicted RBP19.33■□□□□ 0.68
VIPAS39-210ENST00000557466 SOS1Q07889 1333 aaPredicted RBP19.32■□□□□ 0.68
VIPAS39-210ENST00000557466 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.32■□□□□ 0.68
VIPAS39-210ENST00000557466 TSR2Q969E8 191 aaKnown RBP19.32■□□□□ 0.68
VIPAS39-210ENST00000557466 RTCBQ9Y3I0 505 aaKnown RBP19.32■□□□□ 0.68
VIPAS39-210ENST00000557466 SCN7AQ01118 1682 aa19.31■□□□□ 0.68
VIPAS39-210ENST00000557466 A1BGP04217 495 aa19.31■□□□□ 0.68
VIPAS39-210ENST00000557466 SPINK5Q9NQ38 1064 aaPredicted RBP19.31■□□□□ 0.68
VIPAS39-210ENST00000557466 LRP5O75197 1615 aa19.31■□□□□ 0.68
VIPAS39-210ENST00000557466 BCORQ6W2J9 1755 aa19.31■□□□□ 0.68
VIPAS39-210ENST00000557466 FANCIQ9NVI1 1328 aa19.3■□□□□ 0.68
VIPAS39-210ENST00000557466 CANXP27824 592 aaKnown RBP19.3■□□□□ 0.68
VIPAS39-210ENST00000557466 FLAD1Q8NFF5 587 aa19.3■□□□□ 0.68
VIPAS39-210ENST00000557466 COL15A1P39059 1388 aa19.3■□□□□ 0.68
VIPAS39-210ENST00000557466 PIP4K2AP48426 406 aaPredicted RBP19.29■□□□□ 0.68
VIPAS39-210ENST00000557466 MSH5O43196 834 aa19.28■□□□□ 0.68
VIPAS39-210ENST00000557466 ADRA2BP18089 450 aa19.28■□□□□ 0.68
VIPAS39-210ENST00000557466 SRCAPQ6ZRS2 3230 aa19.28■□□□□ 0.68
VIPAS39-210ENST00000557466 NBPF26B4DH59 902 aa19.27■□□□□ 0.68
VIPAS39-210ENST00000557466 ZBTB7AO95365 584 aa19.27■□□□□ 0.68
VIPAS39-210ENST00000557466 HNRNPUQ00839 825 aaKnown RBP eCLIP19.27■□□□□ 0.68
VIPAS39-210ENST00000557466 TRAPPC3LQ5T215 181 aa19.27■□□□□ 0.68
VIPAS39-210ENST00000557466 DUSP27Q5VZP5 1158 aa19.27■□□□□ 0.68
VIPAS39-210ENST00000557466 NBPF10Q6P3W6 841 aaKnown RBP19.27■□□□□ 0.68
VIPAS39-210ENST00000557466 NBPF15Q8N660 670 aa19.27■□□□□ 0.68
VIPAS39-210ENST00000557466 C8orf58Q8NAV2 365 aa19.27■□□□□ 0.68
VIPAS39-210ENST00000557466 ARHGEF1Q92888 912 aaKnown RBP19.27■□□□□ 0.68
VIPAS39-210ENST00000557466 HOXB7P09629 217 aa19.26■□□□□ 0.67
VIPAS39-210ENST00000557466 EIF5P55010 431 aaKnown RBP19.26■□□□□ 0.67
VIPAS39-210ENST00000557466 EIF2S2P20042 333 aaKnown RBP19.25■□□□□ 0.67
VIPAS39-210ENST00000557466 IL6STP40189 918 aaPredicted RBP19.25■□□□□ 0.67
VIPAS39-210ENST00000557466 GOLGA2Q08379 1002 aa19.25■□□□□ 0.67
VIPAS39-210ENST00000557466 SLC16A10Q8TF71 515 aa19.25■□□□□ 0.67
VIPAS39-210ENST00000557466 MYH16Q9H6N6 1097 aa19.25■□□□□ 0.67
VIPAS39-210ENST00000557466 ZNF330Q9Y3S2 320 aaPredicted RBP19.25■□□□□ 0.67
VIPAS39-210ENST00000557466 ELL2O00472 640 aaPredicted RBP19.24■□□□□ 0.67
VIPAS39-210ENST00000557466 TSPYL6Q8N831 410 aa19.24■□□□□ 0.67
VIPAS39-210ENST00000557466 NECTIN2Q92692 538 aa19.24■□□□□ 0.67
VIPAS39-210ENST00000557466 MTFR1LQ9H019 292 aa19.24■□□□□ 0.67
VIPAS39-210ENST00000557466 ERBB4Q15303 1308 aa19.24■□□□□ 0.67
VIPAS39-210ENST00000557466 USP42Q9H9J4 1324 aaKnown RBP19.24■□□□□ 0.67
VIPAS39-210ENST00000557466 RFC4P35249 363 aa19.23■□□□□ 0.67
VIPAS39-210ENST00000557466 HDGFL1Q5TGJ6 251 aa19.23■□□□□ 0.67
VIPAS39-210ENST00000557466 MSL1Q68DK7 614 aa19.23■□□□□ 0.67
VIPAS39-210ENST00000557466 SRP68Q9UHB9 627 aaKnown RBP19.23■□□□□ 0.67
VIPAS39-210ENST00000557466 ATF5Q9Y2D1 282 aaPredicted RBP19.23■□□□□ 0.67
VIPAS39-210ENST00000557466 E9PSI1 815 aa19.22■□□□□ 0.67
VIPAS39-210ENST00000557466 PDIA6Q15084 440 aa19.22■□□□□ 0.67
VIPAS39-210ENST00000557466 CDCA7LQ96GN5 454 aa19.22■□□□□ 0.67
VIPAS39-210ENST00000557466 MYL6BP14649 208 aa19.21■□□□□ 0.67
VIPAS39-210ENST00000557466 EXOSC9Q06265 439 aaKnown RBP19.21■□□□□ 0.67
VIPAS39-210ENST00000557466 SLFN5Q08AF3 891 aa19.21■□□□□ 0.67
VIPAS39-210ENST00000557466 PROSER3Q2NL68 480 aa19.21■□□□□ 0.67
VIPAS39-210ENST00000557466 SPON1Q9HCB6 807 aa19.21■□□□□ 0.67
VIPAS39-210ENST00000557466 A0A087WZG4 1122 aa19.2■□□□□ 0.66
VIPAS39-210ENST00000557466 ANXA1P04083 346 aa19.2■□□□□ 0.66
VIPAS39-210ENST00000557466 GYS1P13807 737 aa19.2■□□□□ 0.66
VIPAS39-210ENST00000557466 TWISTNBQ3B726 338 aaPredicted RBP19.2■□□□□ 0.66
VIPAS39-210ENST00000557466 LRP10Q7Z4F1 713 aa19.2■□□□□ 0.66
VIPAS39-210ENST00000557466 CHPF2Q9P2E5 772 aa19.2■□□□□ 0.66
VIPAS39-210ENST00000557466 NARFQ9UHQ1 456 aa19.2■□□□□ 0.66
VIPAS39-210ENST00000557466 NUP98P52948 1817 aa19.19■□□□□ 0.66
VIPAS39-210ENST00000557466 PTGER2P43116 358 aa19.19■□□□□ 0.66
VIPAS39-210ENST00000557466 SGIP1Q9BQI5 828 aa19.19■□□□□ 0.66
VIPAS39-210ENST00000557466 TBC1D2BQ9UPU7 963 aa19.19■□□□□ 0.66
VIPAS39-210ENST00000557466 ZBED9Q6R2W3 1325 aa19.19■□□□□ 0.66
VIPAS39-210ENST00000557466 USPL1Q5W0Q7 1092 aa19.18■□□□□ 0.66
VIPAS39-210ENST00000557466 NPM2Q86SE8 214 aaKnown RBP19.18■□□□□ 0.66
VIPAS39-210ENST00000557466 DZIP3Q86Y13 1208 aaKnown RBP19.18■□□□□ 0.66
VIPAS39-210ENST00000557466 BCL2L12Q9HB09 334 aa19.18■□□□□ 0.66
VIPAS39-210ENST00000557466 DDX21Q9NR30 783 aaKnown RBP eCLIP19.18■□□□□ 0.66
VIPAS39-210ENST00000557466 CACNA1FO60840 1977 aa19.18■□□□□ 0.66
VIPAS39-210ENST00000557466 ANKRD36CQ5JPF3 1778 aa19.18■□□□□ 0.66
VIPAS39-210ENST00000557466 ZPR1O75312 459 aa19.17■□□□□ 0.66
VIPAS39-210ENST00000557466 TRMT2AQ8IZ69 625 aaKnown RBP19.17■□□□□ 0.66
VIPAS39-210ENST00000557466 ARXQ96QS3 562 aa19.17■□□□□ 0.66
VIPAS39-210ENST00000557466 ARFGEF2Q9Y6D5 1785 aa19.16■□□□□ 0.66
VIPAS39-210ENST00000557466 AFDNP55196 1824 aaKnown RBP19.16■□□□□ 0.66
VIPAS39-210ENST00000557466 CAMTA2O94983 1202 aa19.16■□□□□ 0.66
VIPAS39-210ENST00000557466 FKBP8Q14318 412 aa19.16■□□□□ 0.66
VIPAS39-210ENST00000557466 TTLL7Q6ZT98 887 aa19.16■□□□□ 0.66
VIPAS39-210ENST00000557466 DBF4Q9UBU7 674 aaPredicted RBP19.16■□□□□ 0.66
VIPAS39-210ENST00000557466 VAMP4O75379 141 aa19.15■□□□□ 0.66
VIPAS39-210ENST00000557466 CCDC30Q5VVM6 783 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms