RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 SPON1Q9HCB6 807 aa16.29■□□□□ 0.2
SYNE2-214ENST00000554928 CICQ96RK0 1608 aaPredicted RBP16.29■□□□□ 0.2
SYNE2-214ENST00000554928 RC3H1Q5TC82 1133 aaKnown RBP16.28■□□□□ 0.2
SYNE2-214ENST00000554928 RPS6KA4O75676 772 aa16.27■□□□□ 0.2
SYNE2-214ENST00000554928 SSFA2P28290 1259 aa16.27■□□□□ 0.2
SYNE2-214ENST00000554928 VSIG10Q8N0Z9 540 aa16.27■□□□□ 0.2
SYNE2-214ENST00000554928 FMNL2Q96PY5 1086 aa16.27■□□□□ 0.2
SYNE2-214ENST00000554928 ZBTB1Q9Y2K1 713 aa16.27■□□□□ 0.2
SYNE2-214ENST00000554928 ARHGEF1Q92888 912 aaKnown RBP16.26■□□□□ 0.19
SYNE2-214ENST00000554928 CCDC87Q9NVE4 849 aa16.26■□□□□ 0.19
SYNE2-214ENST00000554928 PIP4K2AP48426 406 aaPredicted RBP16.25■□□□□ 0.19
SYNE2-214ENST00000554928 FAM9BQ8IZU0 186 aa16.25■□□□□ 0.19
SYNE2-214ENST00000554928 RTCBQ9Y3I0 505 aaKnown RBP16.25■□□□□ 0.19
SYNE2-214ENST00000554928 USP16Q9Y5T5 823 aa16.25■□□□□ 0.19
SYNE2-214ENST00000554928 KDM3BQ7LBC6 1761 aa16.24■□□□□ 0.19
SYNE2-214ENST00000554928 A1BGP04217 495 aa16.24■□□□□ 0.19
SYNE2-214ENST00000554928 EIF4A1P60842 406 aaKnown RBP16.24■□□□□ 0.19
SYNE2-214ENST00000554928 SLC16A10Q8TF71 515 aa16.24■□□□□ 0.19
SYNE2-214ENST00000554928 SRP68Q9UHB9 627 aaKnown RBP16.24■□□□□ 0.19
SYNE2-214ENST00000554928 SOS1Q07889 1333 aaPredicted RBP16.23■□□□□ 0.19
SYNE2-214ENST00000554928 CANXP27824 592 aaKnown RBP16.23■□□□□ 0.19
SYNE2-214ENST00000554928 LMOD3Q0VAK6 560 aa16.23■□□□□ 0.19
SYNE2-214ENST00000554928 TRAPPC3LQ5T215 181 aa16.23■□□□□ 0.19
SYNE2-214ENST00000554928 FLAD1Q8NFF5 587 aa16.23■□□□□ 0.19
SYNE2-214ENST00000554928 TSPYL4Q9UJ04 414 aa16.23■□□□□ 0.19
SYNE2-214ENST00000554928 KRT24Q2M2I5 525 aa16.22■□□□□ 0.19
SYNE2-214ENST00000554928 SNRPA1P09661 255 aaKnown RBP16.21■□□□□ 0.19
SYNE2-214ENST00000554928 HMGB2P26583 209 aaKnown RBP16.21■□□□□ 0.19
SYNE2-214ENST00000554928 DIEXFQ68CQ4 756 aaKnown RBP16.21■□□□□ 0.19
SYNE2-214ENST00000554928 LAS1LQ9Y4W2 734 aaKnown RBP16.21■□□□□ 0.19
SYNE2-214ENST00000554928 COL24A1Q17RW2 1714 aa16.21■□□□□ 0.19
SYNE2-214ENST00000554928 C4AP0C0L4 1744 aa16.2■□□□□ 0.18
SYNE2-214ENST00000554928 CHL1O00533 1208 aa16.2■□□□□ 0.18
SYNE2-214ENST00000554928 GIGYF1O75420 1035 aaPredicted RBP16.2■□□□□ 0.18
SYNE2-214ENST00000554928 STARD3NLO95772 234 aa16.2■□□□□ 0.18
SYNE2-214ENST00000554928 SLC4A2P04920 1241 aa16.2■□□□□ 0.18
SYNE2-214ENST00000554928 PPP1R1BQ9UD71 204 aaPredicted RBP16.2■□□□□ 0.18
SYNE2-214ENST00000554928 SALL2Q9Y467 1007 aaPredicted RBP16.2■□□□□ 0.18
SYNE2-214ENST00000554928 COL15A1P39059 1388 aa16.19■□□□□ 0.18
SYNE2-214ENST00000554928 NBPF26B4DH59 902 aa16.19■□□□□ 0.18
SYNE2-214ENST00000554928 GYS1P13807 737 aa16.19■□□□□ 0.18
SYNE2-214ENST00000554928 RFC4P35249 363 aa16.19■□□□□ 0.18
SYNE2-214ENST00000554928 EIF5P55010 431 aaKnown RBP16.19■□□□□ 0.18
SYNE2-214ENST00000554928 NBPF10Q6P3W6 841 aaKnown RBP16.19■□□□□ 0.18
SYNE2-214ENST00000554928 MIER1Q8N108 512 aa16.19■□□□□ 0.18
SYNE2-214ENST00000554928 NBPF15Q8N660 670 aa16.19■□□□□ 0.18
SYNE2-214ENST00000554928 ARXQ96QS3 562 aa16.19■□□□□ 0.18
SYNE2-214ENST00000554928 FKBP8Q14318 412 aa16.18■□□□□ 0.18
SYNE2-214ENST00000554928 TEX13AQ9BXU3 409 aaPredicted RBP16.18■□□□□ 0.18
SYNE2-214ENST00000554928 FHDC1Q9C0D6 1143 aaPredicted RBP16.18■□□□□ 0.18
SYNE2-214ENST00000554928 BCL2L12Q9HB09 334 aa16.18■□□□□ 0.18
SYNE2-214ENST00000554928 USP42Q9H9J4 1324 aaKnown RBP16.18■□□□□ 0.18
SYNE2-214ENST00000554928 ZNF853P0CG23 659 aa16.17■□□□□ 0.18
SYNE2-214ENST00000554928 USPL1Q5W0Q7 1092 aa16.17■□□□□ 0.18
SYNE2-214ENST00000554928 MBIPQ9NS73 344 aa16.17■□□□□ 0.18
SYNE2-214ENST00000554928 ZNF330Q9Y3S2 320 aaPredicted RBP16.17■□□□□ 0.18
SYNE2-214ENST00000554928 POLD1P28340 1107 aa16.16■□□□□ 0.18
SYNE2-214ENST00000554928 WWC1Q8IX03 1113 aa16.16■□□□□ 0.18
SYNE2-214ENST00000554928 MMP10P09238 476 aa16.15■□□□□ 0.18
SYNE2-214ENST00000554928 KLHL34Q8N239 644 aa16.15■□□□□ 0.18
SYNE2-214ENST00000554928 CFAP44Q96MT7 982 aa16.15■□□□□ 0.18
SYNE2-214ENST00000554928 BABAM1Q9NWV8 329 aa16.15■□□□□ 0.18
SYNE2-214ENST00000554928 TBC1D2BQ9UPU7 963 aa16.15■□□□□ 0.18
SYNE2-214ENST00000554928 CCER2I3L3R5 266 aa16.14■□□□□ 0.17
SYNE2-214ENST00000554928 IL6STP40189 918 aaPredicted RBP16.14■□□□□ 0.17
SYNE2-214ENST00000554928 DDR1Q08345 913 aa16.14■□□□□ 0.17
SYNE2-214ENST00000554928 NECTIN2Q92692 538 aa16.14■□□□□ 0.17
SYNE2-214ENST00000554928 SYT17Q9BSW7 474 aa16.14■□□□□ 0.17
SYNE2-214ENST00000554928 NARFQ9UHQ1 456 aa16.14■□□□□ 0.17
SYNE2-214ENST00000554928 ANXA1P04083 346 aa16.13■□□□□ 0.17
SYNE2-214ENST00000554928 EIF2S2P20042 333 aaKnown RBP16.13■□□□□ 0.17
SYNE2-214ENST00000554928 CCDC27Q2M243 656 aa16.13■□□□□ 0.17
SYNE2-214ENST00000554928 PROSER3Q2NL68 480 aa16.13■□□□□ 0.17
SYNE2-214ENST00000554928 NLGN2Q8NFZ4 835 aa16.13■□□□□ 0.17
SYNE2-214ENST00000554928 TSR2Q969E8 191 aaKnown RBP16.13■□□□□ 0.17
SYNE2-214ENST00000554928 IFT57Q9NWB7 429 aa16.13■□□□□ 0.17
SYNE2-214ENST00000554928 LAMB4A4D0S4 1761 aa16.13■□□□□ 0.17
SYNE2-214ENST00000554928 ZPR1O75312 459 aa16.12■□□□□ 0.17
SYNE2-214ENST00000554928 CAMTA2O94983 1202 aa16.12■□□□□ 0.17
SYNE2-214ENST00000554928 PDIA6Q15084 440 aa16.12■□□□□ 0.17
SYNE2-214ENST00000554928 SPINK5Q9NQ38 1064 aaPredicted RBP16.12■□□□□ 0.17
SYNE2-214ENST00000554928 GNAI1P63096 354 aa16.11■□□□□ 0.17
SYNE2-214ENST00000554928 NLGN1Q8N2Q7 840 aa16.11■□□□□ 0.17
SYNE2-214ENST00000554928 NGEFQ8N5V2 710 aa16.11■□□□□ 0.17
SYNE2-214ENST00000554928 ELL2O00472 640 aaPredicted RBP16.1■□□□□ 0.17
SYNE2-214ENST00000554928 MYL6BP14649 208 aa16.1■□□□□ 0.17
SYNE2-214ENST00000554928 TM4SF1P30408 202 aa16.1■□□□□ 0.17
SYNE2-214ENST00000554928 NFIXQ14938 502 aa16.1■□□□□ 0.17
SYNE2-214ENST00000554928 TTLL7Q6ZT98 887 aa16.1■□□□□ 0.17
SYNE2-214ENST00000554928 LRP10Q7Z4F1 713 aa16.1■□□□□ 0.17
SYNE2-214ENST00000554928 DZIP3Q86Y13 1208 aaKnown RBP16.1■□□□□ 0.17
SYNE2-214ENST00000554928 C8orf58Q8NAV2 365 aa16.1■□□□□ 0.17
SYNE2-214ENST00000554928 A0A087WZG4 1122 aa16.09■□□□□ 0.17
SYNE2-214ENST00000554928 POLRMTO00411 1230 aaKnown RBP16.09■□□□□ 0.17
SYNE2-214ENST00000554928 DUSP27Q5VZP5 1158 aa16.09■□□□□ 0.17
SYNE2-214ENST00000554928 TBC1D9BQ66K14 1250 aa16.09■□□□□ 0.17
SYNE2-214ENST00000554928 BICDL1Q6ZP65 573 aa16.09■□□□□ 0.17
SYNE2-214ENST00000554928 TSPYL6Q8N831 410 aa16.09■□□□□ 0.17
SYNE2-214ENST00000554928 SCN7AQ01118 1682 aa16.08■□□□□ 0.17
SYNE2-214ENST00000554928 CALD1Q05682 793 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms