RNA–Protein interactions for RNA: ENST00000549883.5

HDAC7-229, Transcript of histone deacetylase 7, humanhuman

TSL 3

Gene HDAC7, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-229ENST00000549883 KIAA1551Q9HCM1 1747 aa12.97□□□□□ -0.33
HDAC7-229ENST00000549883 USP42Q9H9J4 1324 aaKnown RBP12.97□□□□□ -0.33
HDAC7-229ENST00000549883 HTATSF1O43719 755 aaKnown RBP12.97□□□□□ -0.33
HDAC7-229ENST00000549883 A1BGP04217 495 aa12.97□□□□□ -0.33
HDAC7-229ENST00000549883 VSIG10Q8N0Z9 540 aa12.97□□□□□ -0.33
HDAC7-229ENST00000549883 ADAMTS8Q9UP79 889 aa12.97□□□□□ -0.33
HDAC7-229ENST00000549883 N4BP2Q86UW6 1770 aaPredicted RBP12.97□□□□□ -0.33
HDAC7-229ENST00000549883 MAPK8IP3Q9UPT6 1336 aa12.96□□□□□ -0.33
HDAC7-229ENST00000549883 YBX3P16989 372 aaKnown RBP eCLIP12.96□□□□□ -0.33
HDAC7-229ENST00000549883 PELP1Q8IZL8 1130 aaKnown RBP12.96□□□□□ -0.33
HDAC7-229ENST00000549883 FMNL2Q96PY5 1086 aa12.96□□□□□ -0.33
HDAC7-229ENST00000549883 USP16Q9Y5T5 823 aa12.96□□□□□ -0.33
HDAC7-229ENST00000549883 KIF13BQ9NQT8 1826 aa12.96□□□□□ -0.33
HDAC7-229ENST00000549883 COL15A1P39059 1388 aa12.95□□□□□ -0.34
HDAC7-229ENST00000549883 DDR1Q08345 913 aa12.95□□□□□ -0.34
HDAC7-229ENST00000549883 TAF7Q15545 349 aaPredicted RBP12.95□□□□□ -0.34
HDAC7-229ENST00000549883 USPL1Q5W0Q7 1092 aa12.95□□□□□ -0.34
HDAC7-229ENST00000549883 BCL2L12Q9HB09 334 aa12.95□□□□□ -0.34
HDAC7-229ENST00000549883 AFDNP55196 1824 aaKnown RBP12.95□□□□□ -0.34
HDAC7-229ENST00000549883 CHD4Q14839 1912 aa12.94□□□□□ -0.34
HDAC7-229ENST00000549883 STARD3NLO95772 234 aa12.94□□□□□ -0.34
HDAC7-229ENST00000549883 NEFMP07197 916 aa12.94□□□□□ -0.34
HDAC7-229ENST00000549883 TMPOP42166 694 aaKnown RBP12.94□□□□□ -0.34
HDAC7-229ENST00000549883 EIF5P55010 431 aaKnown RBP12.94□□□□□ -0.34
HDAC7-229ENST00000549883 RIPK4P57078 832 aa12.94□□□□□ -0.34
HDAC7-229ENST00000549883 NEUROD2Q15784 382 aa12.94□□□□□ -0.34
HDAC7-229ENST00000549883 NLGN1Q8N2Q7 840 aa12.94□□□□□ -0.34
HDAC7-229ENST00000549883 CD2APQ9Y5K6 639 aa12.94□□□□□ -0.34
HDAC7-229ENST00000549883 WDR43Q15061 677 aaKnown RBP eCLIP12.93□□□□□ -0.34
HDAC7-229ENST00000549883 GPR162Q16538 588 aa12.93□□□□□ -0.34
HDAC7-229ENST00000549883 ZNF330Q9Y3S2 320 aaPredicted RBP12.93□□□□□ -0.34
HDAC7-229ENST00000549883 LAMB4A4D0S4 1761 aa12.92□□□□□ -0.34
HDAC7-229ENST00000549883 SENP3-EIF4A1A0A087X0R7 540 aa12.92□□□□□ -0.34
HDAC7-229ENST00000549883 NBPF26B4DH59 902 aa12.92□□□□□ -0.34
HDAC7-229ENST00000549883 TM4SF1P30408 202 aa12.92□□□□□ -0.34
HDAC7-229ENST00000549883 NBPF10Q6P3W6 841 aaKnown RBP12.92□□□□□ -0.34
HDAC7-229ENST00000549883 NBPF15Q8N660 670 aa12.92□□□□□ -0.34
HDAC7-229ENST00000549883 PNNQ9H307 717 aaKnown RBP12.92□□□□□ -0.34
HDAC7-229ENST00000549883 NARFQ9UHQ1 456 aa12.92□□□□□ -0.34
HDAC7-229ENST00000549883 TRIM35Q9UPQ4 493 aa12.92□□□□□ -0.34
HDAC7-229ENST00000549883 TBC1D2BQ9UPU7 963 aa12.92□□□□□ -0.34
HDAC7-229ENST00000549883 SCN7AQ01118 1682 aa12.92□□□□□ -0.34
HDAC7-229ENST00000549883 GOLGB1Q14789 3259 aaKnown RBP12.92□□□□□ -0.34
HDAC7-229ENST00000549883 C10orf71Q711Q0 1435 aa12.91□□□□□ -0.34
HDAC7-229ENST00000549883 UTRNP46939 3433 aa12.91□□□□□ -0.34
HDAC7-229ENST00000549883 DCAF8L1A6NGE4 600 aa12.91□□□□□ -0.34
HDAC7-229ENST00000549883 ZPR1O75312 459 aa12.91□□□□□ -0.34
HDAC7-229ENST00000549883 SNRPA1P09661 255 aaKnown RBP12.91□□□□□ -0.34
HDAC7-229ENST00000549883 EIF4A1P60842 406 aaKnown RBP12.91□□□□□ -0.34
HDAC7-229ENST00000549883 NFIXQ14938 502 aa12.91□□□□□ -0.34
HDAC7-229ENST00000549883 RUNDC1Q96C34 613 aa12.91□□□□□ -0.34
HDAC7-229ENST00000549883 TEX13AQ9BXU3 409 aaPredicted RBP12.91□□□□□ -0.34
HDAC7-229ENST00000549883 BRCA1P38398 1863 aaKnown RBP12.91□□□□□ -0.34
HDAC7-229ENST00000549883 PXDNLA1KZ92 1463 aa12.91□□□□□ -0.34
HDAC7-229ENST00000549883 BCORQ6W2J9 1755 aa12.9□□□□□ -0.34
HDAC7-229ENST00000549883 A0A0G2JLW4 131 aa12.9□□□□□ -0.34
HDAC7-229ENST00000549883 POLRMTO00411 1230 aaKnown RBP12.9□□□□□ -0.34
HDAC7-229ENST00000549883 YY1P25490 414 aa12.9□□□□□ -0.34
HDAC7-229ENST00000549883 PARP3Q9Y6F1 533 aa12.9□□□□□ -0.34
HDAC7-229ENST00000549883 NRXN2Q9P2S2 1712 aa12.9□□□□□ -0.34
HDAC7-229ENST00000549883 GIGYF1O75420 1035 aaPredicted RBP12.89□□□□□ -0.35
HDAC7-229ENST00000549883 IL6STP40189 918 aaPredicted RBP12.89□□□□□ -0.35
HDAC7-229ENST00000549883 BICDL1Q6ZP65 573 aa12.89□□□□□ -0.35
HDAC7-229ENST00000549883 APAF1O14727 1248 aa12.88□□□□□ -0.35
HDAC7-229ENST00000549883 CAMTA2O94983 1202 aa12.88□□□□□ -0.35
HDAC7-229ENST00000549883 DPEP1P16444 411 aa12.88□□□□□ -0.35
HDAC7-229ENST00000549883 KRT24Q2M2I5 525 aa12.88□□□□□ -0.35
HDAC7-229ENST00000549883 TBC1D9BQ66K14 1250 aa12.88□□□□□ -0.35
HDAC7-229ENST00000549883 ANKRD31Q8N7Z5 1873 aa12.87□□□□□ -0.35
HDAC7-229ENST00000549883 CARMIL3Q8ND23 1372 aa12.87□□□□□ -0.35
HDAC7-229ENST00000549883 KCNA3P22001 575 aa12.87□□□□□ -0.35
HDAC7-229ENST00000549883 CHRNA5P30532 468 aa12.87□□□□□ -0.35
HDAC7-229ENST00000549883 CCDC24Q8N4L8 307 aa12.87□□□□□ -0.35
HDAC7-229ENST00000549883 PNISRQ8TF01 805 aaKnown RBP12.87□□□□□ -0.35
HDAC7-229ENST00000549883 TSPYL4Q9UJ04 414 aa12.87□□□□□ -0.35
HDAC7-229ENST00000549883 A0A087WZG4 1122 aa12.86□□□□□ -0.35
HDAC7-229ENST00000549883 SERPINB2P05120 415 aa12.86□□□□□ -0.35
HDAC7-229ENST00000549883 DZIP3Q86Y13 1208 aaKnown RBP12.86□□□□□ -0.35
HDAC7-229ENST00000549883 NGEFQ8N5V2 710 aa12.85□□□□□ -0.35
HDAC7-229ENST00000549883 LAS1LQ9Y4W2 734 aaKnown RBP12.85□□□□□ -0.35
HDAC7-229ENST00000549883 NUP98P52948 1817 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 CHL1O00533 1208 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 ANP32CO43423 234 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 ANXA1P04083 346 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 TGFB2P61812 414 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 LMOD3Q0VAK6 560 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 PROSER3Q2NL68 480 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 TTLL7Q6ZT98 887 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 NECTIN2Q92692 538 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 MRS2Q9HD23 443 aa12.84□□□□□ -0.35
HDAC7-229ENST00000549883 MYL6BP14649 208 aa12.83□□□□□ -0.36
HDAC7-229ENST00000549883 EIF2S2P20042 333 aaKnown RBP12.83□□□□□ -0.36
HDAC7-229ENST00000549883 PDIA6Q15084 440 aa12.83□□□□□ -0.36
HDAC7-229ENST00000549883 HLFQ16534 295 aa12.83□□□□□ -0.36
HDAC7-229ENST00000549883 COL11A2P13942 1736 aaPredicted RBP12.82□□□□□ -0.36
HDAC7-229ENST00000549883 DLEC1Q9Y238 1755 aa12.82□□□□□ -0.36
HDAC7-229ENST00000549883 LRP10Q7Z4F1 713 aa12.82□□□□□ -0.36
HDAC7-229ENST00000549883 BCS1LQ9Y276 419 aa12.82□□□□□ -0.36
HDAC7-229ENST00000549883 ARFGEF1Q9Y6D6 1849 aa12.82□□□□□ -0.36
HDAC7-229ENST00000549883 GRIN3BO60391 1043 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms