RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 FHDC1Q9C0D6 1143 aaPredicted RBP17.29■□□□□ 0.36
LTBR-208ENST00000541005 RIPK4P57078 832 aa17.28■□□□□ 0.36
LTBR-208ENST00000541005 CCDC146Q8IYE0 955 aa17.28■□□□□ 0.36
LTBR-208ENST00000541005 PNISRQ8TF01 805 aaKnown RBP17.28■□□□□ 0.36
LTBR-208ENST00000541005 COL15A1P39059 1388 aa17.28■□□□□ 0.36
LTBR-208ENST00000541005 USP42Q9H9J4 1324 aaKnown RBP17.27■□□□□ 0.36
LTBR-208ENST00000541005 AFDNP55196 1824 aaKnown RBP17.27■□□□□ 0.36
LTBR-208ENST00000541005 SYT17Q9BSW7 474 aa17.27■□□□□ 0.36
LTBR-208ENST00000541005 THUMPD2Q9BTF0 503 aaKnown RBP17.27■□□□□ 0.36
LTBR-208ENST00000541005 ZBTB1Q9Y2K1 713 aa17.27■□□□□ 0.36
LTBR-208ENST00000541005 KIAA1551Q9HCM1 1747 aa17.27■□□□□ 0.35
LTBR-208ENST00000541005 CHD4Q14839 1912 aa17.26■□□□□ 0.35
LTBR-208ENST00000541005 RFC4P35249 363 aa17.26■□□□□ 0.35
LTBR-208ENST00000541005 CCDC184Q52MB2 194 aa17.26■□□□□ 0.35
LTBR-208ENST00000541005 NRXN2Q9P2S2 1712 aa17.26■□□□□ 0.35
LTBR-208ENST00000541005 BRCA1P38398 1863 aaKnown RBP17.25■□□□□ 0.35
LTBR-208ENST00000541005 SNRPA1P09661 255 aaKnown RBP17.25■□□□□ 0.35
LTBR-208ENST00000541005 GYS1P13807 737 aa17.25■□□□□ 0.35
LTBR-208ENST00000541005 NLGN1Q8N2Q7 840 aa17.25■□□□□ 0.35
LTBR-208ENST00000541005 BABAM1Q9NWV8 329 aa17.25■□□□□ 0.35
LTBR-208ENST00000541005 TRIM35Q9UPQ4 493 aa17.24■□□□□ 0.35
LTBR-208ENST00000541005 EIF5P55010 431 aaKnown RBP17.23■□□□□ 0.35
LTBR-208ENST00000541005 RRP7AQ9Y3A4 280 aaKnown RBP17.23■□□□□ 0.35
LTBR-208ENST00000541005 MMP10P09238 476 aa17.22■□□□□ 0.35
LTBR-208ENST00000541005 IL6STP40189 918 aaPredicted RBP17.22■□□□□ 0.35
LTBR-208ENST00000541005 MIS18AQ9NYP9 233 aa17.22■□□□□ 0.35
LTBR-208ENST00000541005 NARFQ9UHQ1 456 aa17.22■□□□□ 0.35
LTBR-208ENST00000541005 CD2APQ9Y5K6 639 aa17.22■□□□□ 0.35
LTBR-208ENST00000541005 N4BP2Q86UW6 1770 aaPredicted RBP17.21■□□□□ 0.35
LTBR-208ENST00000541005 A0A087WZG4 1122 aa17.21■□□□□ 0.35
LTBR-208ENST00000541005 EIF4A1P60842 406 aaKnown RBP17.21■□□□□ 0.35
LTBR-208ENST00000541005 MRS2Q9HD23 443 aa17.21■□□□□ 0.35
LTBR-208ENST00000541005 SRP68Q9UHB9 627 aaKnown RBP17.21■□□□□ 0.35
LTBR-208ENST00000541005 C10orf71Q711Q0 1435 aa17.21■□□□□ 0.34
LTBR-208ENST00000541005 NUP98P52948 1817 aa17.2■□□□□ 0.34
LTBR-208ENST00000541005 PRAMEF22A3QJZ6 481 aa17.2■□□□□ 0.34
LTBR-208ENST00000541005 CANXP27824 592 aaKnown RBP17.2■□□□□ 0.34
LTBR-208ENST00000541005 USP16Q9Y5T5 823 aa17.2■□□□□ 0.34
LTBR-208ENST00000541005 APAF1O14727 1248 aa17.19■□□□□ 0.34
LTBR-208ENST00000541005 ZPR1O75312 459 aa17.19■□□□□ 0.34
LTBR-208ENST00000541005 GIGYF1O75420 1035 aaPredicted RBP17.19■□□□□ 0.34
LTBR-208ENST00000541005 A1BGP04217 495 aa17.19■□□□□ 0.34
LTBR-208ENST00000541005 FKBP8Q14318 412 aa17.19■□□□□ 0.34
LTBR-208ENST00000541005 NEUROD2Q15784 382 aa17.19■□□□□ 0.34
LTBR-208ENST00000541005 TSPYL4Q9UJ04 414 aa17.19■□□□□ 0.34
LTBR-208ENST00000541005 DLEC1Q9Y238 1755 aa17.19■□□□□ 0.34
LTBR-208ENST00000541005 USPL1Q5W0Q7 1092 aa17.18■□□□□ 0.34
LTBR-208ENST00000541005 CHL1O00533 1208 aa17.17■□□□□ 0.34
LTBR-208ENST00000541005 KLHL34Q8N239 644 aa17.17■□□□□ 0.34
LTBR-208ENST00000541005 NLGN2Q8NFZ4 835 aa17.17■□□□□ 0.34
LTBR-208ENST00000541005 BCL2L12Q9HB09 334 aa17.17■□□□□ 0.34
LTBR-208ENST00000541005 ANKRD31Q8N7Z5 1873 aa17.16■□□□□ 0.34
LTBR-208ENST00000541005 NBPF26B4DH59 902 aa17.16■□□□□ 0.34
LTBR-208ENST00000541005 TM4SF1P30408 202 aa17.16■□□□□ 0.34
LTBR-208ENST00000541005 DDR1Q08345 913 aa17.16■□□□□ 0.34
LTBR-208ENST00000541005 NBPF10Q6P3W6 841 aaKnown RBP17.16■□□□□ 0.34
LTBR-208ENST00000541005 NBPF15Q8N660 670 aa17.16■□□□□ 0.34
LTBR-208ENST00000541005 ARFGEF1Q9Y6D6 1849 aa17.16■□□□□ 0.34
LTBR-208ENST00000541005 RGL2O15211 777 aa17.15■□□□□ 0.34
LTBR-208ENST00000541005 NCBP3Q53F19 620 aaKnown RBP17.15■□□□□ 0.34
LTBR-208ENST00000541005 PARP3Q9Y6F1 533 aa17.15■□□□□ 0.34
LTBR-208ENST00000541005 PXDNLA1KZ92 1463 aa17.15■□□□□ 0.34
LTBR-208ENST00000541005 ERBB4Q15303 1308 aa17.15■□□□□ 0.34
LTBR-208ENST00000541005 DCAF8L1A6NGE4 600 aa17.14■□□□□ 0.33
LTBR-208ENST00000541005 POLRMTO00411 1230 aaKnown RBP17.14■□□□□ 0.33
LTBR-208ENST00000541005 CAMTA2O94983 1202 aa17.14■□□□□ 0.33
LTBR-208ENST00000541005 CFAP44Q96MT7 982 aa17.14■□□□□ 0.33
LTBR-208ENST00000541005 ANKRD36CQ5JPF3 1778 aa17.14■□□□□ 0.33
LTBR-208ENST00000541005 ZNF853P0CG23 659 aa17.13■□□□□ 0.33
LTBR-208ENST00000541005 CALD1Q05682 793 aaKnown RBP17.13■□□□□ 0.33
LTBR-208ENST00000541005 NFIXQ14938 502 aa17.13■□□□□ 0.33
LTBR-208ENST00000541005 CCDC27Q2M243 656 aa17.13■□□□□ 0.33
LTBR-208ENST00000541005 CACNA1FO60840 1977 aa17.13■□□□□ 0.33
LTBR-208ENST00000541005 PIP4K2AP48426 406 aaPredicted RBP17.12■□□□□ 0.33
LTBR-208ENST00000541005 NPM2Q86SE8 214 aaKnown RBP17.12■□□□□ 0.33
LTBR-208ENST00000541005 DZIP3Q86Y13 1208 aaKnown RBP17.12■□□□□ 0.33
LTBR-208ENST00000541005 IFT57Q9NWB7 429 aa17.12■□□□□ 0.33
LTBR-208ENST00000541005 TBC1D2BQ9UPU7 963 aa17.12■□□□□ 0.33
LTBR-208ENST00000541005 ZNF330Q9Y3S2 320 aaPredicted RBP17.12■□□□□ 0.33
LTBR-208ENST00000541005 HOXB7P09629 217 aa17.1■□□□□ 0.33
LTBR-208ENST00000541005 TGFB2P61812 414 aa17.1■□□□□ 0.33
LTBR-208ENST00000541005 CLEC4GQ6UXB4 293 aa17.1■□□□□ 0.33
LTBR-208ENST00000541005 CARMIL3Q8ND23 1372 aa17.1■□□□□ 0.33
LTBR-208ENST00000541005 COL11A2P13942 1736 aaPredicted RBP17.1■□□□□ 0.33
LTBR-208ENST00000541005 GNAI1P63096 354 aa17.09■□□□□ 0.33
LTBR-208ENST00000541005 MBIPQ9NS73 344 aa17.09■□□□□ 0.33
LTBR-208ENST00000541005 ARFGEF2Q9Y6D5 1785 aa17.08■□□□□ 0.33
LTBR-208ENST00000541005 TBC1D9BQ66K14 1250 aa17.08■□□□□ 0.32
LTBR-208ENST00000541005 LRP10Q7Z4F1 713 aa17.08■□□□□ 0.32
LTBR-208ENST00000541005 ZNF652Q9Y2D9 606 aa17.08■□□□□ 0.32
LTBR-208ENST00000541005 LAS1LQ9Y4W2 734 aaKnown RBP17.08■□□□□ 0.32
LTBR-208ENST00000541005 YBX3P16989 372 aaKnown RBP eCLIP17.07■□□□□ 0.32
LTBR-208ENST00000541005 PDIA6Q15084 440 aa17.07■□□□□ 0.32
LTBR-208ENST00000541005 GPR162Q16538 588 aa17.07■□□□□ 0.32
LTBR-208ENST00000541005 WWC1Q8IX03 1113 aa17.07■□□□□ 0.32
LTBR-208ENST00000541005 GOLGB1Q14789 3259 aaKnown RBP17.07■□□□□ 0.32
LTBR-208ENST00000541005 ATP10DQ9P241 1426 aa17.06■□□□□ 0.32
LTBR-208ENST00000541005 CACNA1SQ13698 1873 aa17.06■□□□□ 0.32
LTBR-208ENST00000541005 IL16Q14005 1332 aa17.06■□□□□ 0.32
LTBR-208ENST00000541005 ERVV-1B6SEH8 477 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms