RNA–Protein interactions for RNA: ENST00000540699.1

ATL3-204, Transcript of atlastin GTPase 3, humanhuman

TSL 3

Gene ATL3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-204ENST00000540699 GOLGA2Q08379 1002 aa13.79□□□□□ -0.2
ATL3-204ENST00000540699 SLFN5Q08AF3 891 aa13.79□□□□□ -0.2
ATL3-204ENST00000540699 TTC5Q8N0Z6 440 aa13.79□□□□□ -0.2
ATL3-204ENST00000540699 ZNF496Q96IT1 587 aaPredicted RBP13.79□□□□□ -0.2
ATL3-204ENST00000540699 RBM42Q9BTD8 480 aaKnown RBP13.79□□□□□ -0.2
ATL3-204ENST00000540699 CHL1O00533 1208 aa13.78□□□□□ -0.2
ATL3-204ENST00000540699 ZNF853P0CG23 659 aa13.78□□□□□ -0.2
ATL3-204ENST00000540699 DUSP27Q5VZP5 1158 aa13.78□□□□□ -0.2
ATL3-204ENST00000540699 LINC00116Q8NCU8 138 aa13.78□□□□□ -0.2
ATL3-204ENST00000540699 SLC16A10Q8TF71 515 aa13.78□□□□□ -0.2
ATL3-204ENST00000540699 CALD1Q05682 793 aaKnown RBP13.77□□□□□ -0.21
ATL3-204ENST00000540699 RC3H1Q5TC82 1133 aaKnown RBP13.77□□□□□ -0.21
ATL3-204ENST00000540699 WDR63Q8IWG1 891 aa13.77□□□□□ -0.21
ATL3-204ENST00000540699 FMNL2Q96PY5 1086 aa13.77□□□□□ -0.21
ATL3-204ENST00000540699 CNTNAP4Q9C0A0 1308 aa13.77□□□□□ -0.21
ATL3-204ENST00000540699 SPINK5Q9NQ38 1064 aaPredicted RBP13.77□□□□□ -0.21
ATL3-204ENST00000540699 TFCP2L1Q9NZI6 479 aa13.77□□□□□ -0.21
ATL3-204ENST00000540699 GTF3C3Q9Y5Q9 886 aa13.77□□□□□ -0.21
ATL3-204ENST00000540699 IL16Q14005 1332 aa13.76□□□□□ -0.21
ATL3-204ENST00000540699 E9PSI1 815 aa13.76□□□□□ -0.21
ATL3-204ENST00000540699 CFAP44Q96MT7 982 aa13.76□□□□□ -0.21
ATL3-204ENST00000540699 MIS18AQ9NYP9 233 aa13.76□□□□□ -0.21
ATL3-204ENST00000540699 RNF123Q5XPI4 1314 aa13.75□□□□□ -0.21
ATL3-204ENST00000540699 CYP19A1P11511 503 aaPredicted RBP13.75□□□□□ -0.21
ATL3-204ENST00000540699 EIF4A1P60842 406 aaKnown RBP13.75□□□□□ -0.21
ATL3-204ENST00000540699 DNAJC10Q8IXB1 793 aa13.75□□□□□ -0.21
ATL3-204ENST00000540699 TEX13AQ9BXU3 409 aaPredicted RBP13.75□□□□□ -0.21
ATL3-204ENST00000540699 IFT57Q9NWB7 429 aa13.75□□□□□ -0.21
ATL3-204ENST00000540699 TSPYL4Q9UJ04 414 aa13.75□□□□□ -0.21
ATL3-204ENST00000540699 C4AP0C0L4 1744 aa13.75□□□□□ -0.21
ATL3-204ENST00000540699 POLD1P28340 1107 aa13.74□□□□□ -0.21
ATL3-204ENST00000540699 SNRPA1P09661 255 aaKnown RBP13.73□□□□□ -0.21
ATL3-204ENST00000540699 GNAI1P63096 354 aa13.73□□□□□ -0.21
ATL3-204ENST00000540699 GPR162Q16538 588 aa13.73□□□□□ -0.21
ATL3-204ENST00000540699 INTS5Q6P9B9 1019 aaKnown RBP13.73□□□□□ -0.21
ATL3-204ENST00000540699 SUPT16HQ9Y5B9 1047 aaKnown RBP13.73□□□□□ -0.21
ATL3-204ENST00000540699 GIGYF1O75420 1035 aaPredicted RBP13.72□□□□□ -0.21
ATL3-204ENST00000540699 CRKLP46109 303 aaKnown RBP13.72□□□□□ -0.21
ATL3-204ENST00000540699 AMIGO3Q86WK7 504 aa13.72□□□□□ -0.21
ATL3-204ENST00000540699 AK7Q96M32 723 aa13.72□□□□□ -0.21
ATL3-204ENST00000540699 MBIPQ9NS73 344 aa13.72□□□□□ -0.21
ATL3-204ENST00000540699 RPS6KA4O75676 772 aa13.71□□□□□ -0.21
ATL3-204ENST00000540699 STARD3NLO95772 234 aa13.71□□□□□ -0.21
ATL3-204ENST00000540699 SSFA2P28290 1259 aa13.71□□□□□ -0.21
ATL3-204ENST00000540699 COL23A1Q86Y22 540 aaPredicted RBP13.71□□□□□ -0.21
ATL3-204ENST00000540699 KLHL34Q8N239 644 aa13.71□□□□□ -0.21
ATL3-204ENST00000540699 FLAD1Q8NFF5 587 aa13.71□□□□□ -0.21
ATL3-204ENST00000540699 CCDC87Q9NVE4 849 aa13.71□□□□□ -0.21
ATL3-204ENST00000540699 PRAMEF22A3QJZ6 481 aa13.7□□□□□ -0.22
ATL3-204ENST00000540699 GNPATO15228 680 aa13.7□□□□□ -0.22
ATL3-204ENST00000540699 NLGN2Q8NFZ4 835 aa13.7□□□□□ -0.22
ATL3-204ENST00000540699 SOS1Q07889 1333 aaPredicted RBP13.69□□□□□ -0.22
ATL3-204ENST00000540699 CACNA1FO60840 1977 aa13.69□□□□□ -0.22
ATL3-204ENST00000540699 ADRA2BP18089 450 aa13.69□□□□□ -0.22
ATL3-204ENST00000540699 RCAN3Q9UKA8 241 aa13.69□□□□□ -0.22
ATL3-204ENST00000540699 RTCBQ9Y3I0 505 aaKnown RBP13.69□□□□□ -0.22
ATL3-204ENST00000540699 LAS1LQ9Y4W2 734 aaKnown RBP13.69□□□□□ -0.22
ATL3-204ENST00000540699 USP16Q9Y5T5 823 aa13.69□□□□□ -0.22
ATL3-204ENST00000540699 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.68□□□□□ -0.22
ATL3-204ENST00000540699 MSH5O43196 834 aa13.68□□□□□ -0.22
ATL3-204ENST00000540699 HOXB7P09629 217 aa13.68□□□□□ -0.22
ATL3-204ENST00000540699 ZBTB1Q9Y2K1 713 aa13.68□□□□□ -0.22
ATL3-204ENST00000540699 SCN7AQ01118 1682 aa13.68□□□□□ -0.22
ATL3-204ENST00000540699 BCORQ6W2J9 1755 aa13.68□□□□□ -0.22
ATL3-204ENST00000540699 ERBB4Q15303 1308 aa13.67□□□□□ -0.22
ATL3-204ENST00000540699 EIF5P55010 431 aaKnown RBP13.67□□□□□ -0.22
ATL3-204ENST00000540699 KRT24Q2M2I5 525 aa13.67□□□□□ -0.22
ATL3-204ENST00000540699 MSL1Q68DK7 614 aa13.67□□□□□ -0.22
ATL3-204ENST00000540699 MYH16Q9H6N6 1097 aa13.67□□□□□ -0.22
ATL3-204ENST00000540699 FANCIQ9NVI1 1328 aa13.66□□□□□ -0.22
ATL3-204ENST00000540699 NBPF26B4DH59 902 aa13.66□□□□□ -0.22
ATL3-204ENST00000540699 A1BGP04217 495 aa13.66□□□□□ -0.22
ATL3-204ENST00000540699 IL6STP40189 918 aaPredicted RBP13.66□□□□□ -0.22
ATL3-204ENST00000540699 NBPF10Q6P3W6 841 aaKnown RBP13.66□□□□□ -0.22
ATL3-204ENST00000540699 SMIM5Q71RC9 77 aa13.66□□□□□ -0.22
ATL3-204ENST00000540699 PELP1Q8IZL8 1130 aaKnown RBP13.66□□□□□ -0.22
ATL3-204ENST00000540699 NBPF15Q8N660 670 aa13.66□□□□□ -0.22
ATL3-204ENST00000540699 COL15A1P39059 1388 aa13.66□□□□□ -0.22
ATL3-204ENST00000540699 TRAPPC3LQ5T215 181 aa13.65□□□□□ -0.22
ATL3-204ENST00000540699 ARHGEF1Q92888 912 aaKnown RBP13.65□□□□□ -0.22
ATL3-204ENST00000540699 TSR2Q969E8 191 aaKnown RBP13.65□□□□□ -0.22
ATL3-204ENST00000540699 GRIN3BO60391 1043 aa13.64□□□□□ -0.23
ATL3-204ENST00000540699 PHF14O94880 888 aa13.64□□□□□ -0.23
ATL3-204ENST00000540699 NEFLP07196 543 aa13.64□□□□□ -0.23
ATL3-204ENST00000540699 RRP1P56182 461 aaKnown RBP13.64□□□□□ -0.23
ATL3-204ENST00000540699 C8orf58Q8NAV2 365 aa13.64□□□□□ -0.23
ATL3-204ENST00000540699 NUP98P52948 1817 aa13.63□□□□□ -0.23
ATL3-204ENST00000540699 A0A087WZG4 1122 aa13.63□□□□□ -0.23
ATL3-204ENST00000540699 YBX3P16989 372 aaKnown RBP eCLIP13.63□□□□□ -0.23
ATL3-204ENST00000540699 CANXP27824 592 aaKnown RBP13.63□□□□□ -0.23
ATL3-204ENST00000540699 FKBP8Q14318 412 aa13.63□□□□□ -0.23
ATL3-204ENST00000540699 PDIA6Q15084 440 aa13.63□□□□□ -0.23
ATL3-204ENST00000540699 LRP10Q7Z4F1 713 aa13.63□□□□□ -0.23
ATL3-204ENST00000540699 CEP350Q5VT06 3117 aa13.63□□□□□ -0.23
ATL3-204ENST00000540699 USP42Q9H9J4 1324 aaKnown RBP13.63□□□□□ -0.23
ATL3-204ENST00000540699 CT47B1P0C2W7 299 aaPredicted RBP13.62□□□□□ -0.23
ATL3-204ENST00000540699 TSPYL6Q8N831 410 aa13.62□□□□□ -0.23
ATL3-204ENST00000540699 NARFQ9UHQ1 456 aa13.62□□□□□ -0.23
ATL3-204ENST00000540699 RGL2O15211 777 aa13.61□□□□□ -0.23
ATL3-204ENST00000540699 GYS1P13807 737 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms