RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 A1BGP04217 495 aa20.65■□□□□ 0.9
RPAIN-206ENST00000539417 PIP4K2AP48426 406 aaPredicted RBP20.65■□□□□ 0.9
RPAIN-206ENST00000539417 MSL1Q68DK7 614 aa20.65■□□□□ 0.9
RPAIN-206ENST00000539417 ARHGEF1Q92888 912 aaKnown RBP20.65■□□□□ 0.9
RPAIN-206ENST00000539417 SGIP1Q9BQI5 828 aa20.65■□□□□ 0.9
RPAIN-206ENST00000539417 MTFR1LQ9H019 292 aa20.65■□□□□ 0.9
RPAIN-206ENST00000539417 SPON1Q9HCB6 807 aa20.65■□□□□ 0.9
RPAIN-206ENST00000539417 RTCBQ9Y3I0 505 aaKnown RBP20.65■□□□□ 0.9
RPAIN-206ENST00000539417 C4AP0C0L4 1744 aa20.65■□□□□ 0.9
RPAIN-206ENST00000539417 CHL1O00533 1208 aa20.64■□□□□ 0.89
RPAIN-206ENST00000539417 KRT24Q2M2I5 525 aa20.64■□□□□ 0.89
RPAIN-206ENST00000539417 COL24A1Q17RW2 1714 aa20.64■□□□□ 0.89
RPAIN-206ENST00000539417 CANXP27824 592 aaKnown RBP20.63■□□□□ 0.89
RPAIN-206ENST00000539417 SOS1Q07889 1333 aaPredicted RBP20.63■□□□□ 0.89
RPAIN-206ENST00000539417 SNRPA1P09661 255 aaKnown RBP20.62■□□□□ 0.89
RPAIN-206ENST00000539417 TRAPPC3LQ5T215 181 aa20.62■□□□□ 0.89
RPAIN-206ENST00000539417 GIGYF1O75420 1035 aaPredicted RBP20.62■□□□□ 0.89
RPAIN-206ENST00000539417 ZNF853P0CG23 659 aa20.62■□□□□ 0.89
RPAIN-206ENST00000539417 HMGB2P26583 209 aaKnown RBP20.62■□□□□ 0.89
RPAIN-206ENST00000539417 WWC1Q8IX03 1113 aa20.62■□□□□ 0.89
RPAIN-206ENST00000539417 FLAD1Q8NFF5 587 aa20.62■□□□□ 0.89
RPAIN-206ENST00000539417 SLC16A10Q8TF71 515 aa20.62■□□□□ 0.89
RPAIN-206ENST00000539417 SRP68Q9UHB9 627 aaKnown RBP20.62■□□□□ 0.89
RPAIN-206ENST00000539417 STARD3NLO95772 234 aa20.61■□□□□ 0.89
RPAIN-206ENST00000539417 CFAP44Q96MT7 982 aa20.6■□□□□ 0.89
RPAIN-206ENST00000539417 TEX13AQ9BXU3 409 aaPredicted RBP20.6■□□□□ 0.89
RPAIN-206ENST00000539417 MBIPQ9NS73 344 aa20.6■□□□□ 0.89
RPAIN-206ENST00000539417 BABAM1Q9NWV8 329 aa20.6■□□□□ 0.89
RPAIN-206ENST00000539417 LAMB4A4D0S4 1761 aa20.6■□□□□ 0.89
RPAIN-206ENST00000539417 NBPF26B4DH59 902 aa20.59■□□□□ 0.89
RPAIN-206ENST00000539417 CCDC27Q2M243 656 aa20.59■□□□□ 0.89
RPAIN-206ENST00000539417 NBPF10Q6P3W6 841 aaKnown RBP20.59■□□□□ 0.89
RPAIN-206ENST00000539417 NBPF15Q8N660 670 aa20.59■□□□□ 0.89
RPAIN-206ENST00000539417 COL15A1P39059 1388 aa20.58■□□□□ 0.89
RPAIN-206ENST00000539417 EIF5P55010 431 aaKnown RBP20.58■□□□□ 0.89
RPAIN-206ENST00000539417 ADRA2BP18089 450 aa20.57■□□□□ 0.88
RPAIN-206ENST00000539417 GYS1P13807 737 aa20.56■□□□□ 0.88
RPAIN-206ENST00000539417 RFC4P35249 363 aa20.56■□□□□ 0.88
RPAIN-206ENST00000539417 IFT57Q9NWB7 429 aa20.56■□□□□ 0.88
RPAIN-206ENST00000539417 TSR2Q969E8 191 aaKnown RBP20.56■□□□□ 0.88
RPAIN-206ENST00000539417 ZNF330Q9Y3S2 320 aaPredicted RBP20.56■□□□□ 0.88
RPAIN-206ENST00000539417 USP42Q9H9J4 1324 aaKnown RBP20.55■□□□□ 0.88
RPAIN-206ENST00000539417 USPL1Q5W0Q7 1092 aa20.55■□□□□ 0.88
RPAIN-206ENST00000539417 BCL2L12Q9HB09 334 aa20.55■□□□□ 0.88
RPAIN-206ENST00000539417 SPINK5Q9NQ38 1064 aaPredicted RBP20.55■□□□□ 0.88
RPAIN-206ENST00000539417 GNAI1P63096 354 aa20.54■□□□□ 0.88
RPAIN-206ENST00000539417 FKBP8Q14318 412 aa20.54■□□□□ 0.88
RPAIN-206ENST00000539417 NCBP3Q53F19 620 aaKnown RBP20.54■□□□□ 0.88
RPAIN-206ENST00000539417 NECTIN2Q92692 538 aa20.54■□□□□ 0.88
RPAIN-206ENST00000539417 EIF2S2P20042 333 aaKnown RBP20.53■□□□□ 0.88
RPAIN-206ENST00000539417 IL6STP40189 918 aaPredicted RBP20.53■□□□□ 0.88
RPAIN-206ENST00000539417 ARXQ96QS3 562 aa20.53■□□□□ 0.88
RPAIN-206ENST00000539417 TBC1D2BQ9UPU7 963 aa20.53■□□□□ 0.88
RPAIN-206ENST00000539417 PPP1R1BQ9UD71 204 aaPredicted RBP20.52■□□□□ 0.88
RPAIN-206ENST00000539417 NARFQ9UHQ1 456 aa20.52■□□□□ 0.88
RPAIN-206ENST00000539417 ANXA1P04083 346 aa20.51■□□□□ 0.87
RPAIN-206ENST00000539417 CALD1Q05682 793 aaKnown RBP20.51■□□□□ 0.87
RPAIN-206ENST00000539417 PROSER3Q2NL68 480 aa20.51■□□□□ 0.87
RPAIN-206ENST00000539417 C8orf58Q8NAV2 365 aa20.51■□□□□ 0.87
RPAIN-206ENST00000539417 ELL2O00472 640 aaPredicted RBP20.5■□□□□ 0.87
RPAIN-206ENST00000539417 POLD1P28340 1107 aa20.5■□□□□ 0.87
RPAIN-206ENST00000539417 PDIA6Q15084 440 aa20.5■□□□□ 0.87
RPAIN-206ENST00000539417 TSPYL6Q8N831 410 aa20.5■□□□□ 0.87
RPAIN-206ENST00000539417 ZNF521Q96K83 1311 aa20.5■□□□□ 0.87
RPAIN-206ENST00000539417 MMP10P09238 476 aa20.5■□□□□ 0.87
RPAIN-206ENST00000539417 MYL6BP14649 208 aa20.5■□□□□ 0.87
RPAIN-206ENST00000539417 DUSP27Q5VZP5 1158 aa20.5■□□□□ 0.87
RPAIN-206ENST00000539417 NGEFQ8N5V2 710 aa20.5■□□□□ 0.87
RPAIN-206ENST00000539417 FHDC1Q9C0D6 1143 aaPredicted RBP20.5■□□□□ 0.87
RPAIN-206ENST00000539417 SCN7AQ01118 1682 aa20.49■□□□□ 0.87
RPAIN-206ENST00000539417 ZPR1O75312 459 aa20.49■□□□□ 0.87
RPAIN-206ENST00000539417 LRP10Q7Z4F1 713 aa20.49■□□□□ 0.87
RPAIN-206ENST00000539417 WDR63Q8IWG1 891 aa20.49■□□□□ 0.87
RPAIN-206ENST00000539417 IL16Q14005 1332 aa20.48■□□□□ 0.87
RPAIN-206ENST00000539417 CAMTA2O94983 1202 aa20.48■□□□□ 0.87
RPAIN-206ENST00000539417 DDR1Q08345 913 aa20.48■□□□□ 0.87
RPAIN-206ENST00000539417 NLGN1Q8N2Q7 840 aa20.48■□□□□ 0.87
RPAIN-206ENST00000539417 BCORQ6W2J9 1755 aa20.47■□□□□ 0.87
RPAIN-206ENST00000539417 FANCIQ9NVI1 1328 aa20.47■□□□□ 0.87
RPAIN-206ENST00000539417 DZIP3Q86Y13 1208 aaKnown RBP20.47■□□□□ 0.87
RPAIN-206ENST00000539417 A0A087WZG4 1122 aa20.46■□□□□ 0.87
RPAIN-206ENST00000539417 TM4SF1P30408 202 aa20.46■□□□□ 0.87
RPAIN-206ENST00000539417 TTLL7Q6ZT98 887 aa20.46■□□□□ 0.87
RPAIN-206ENST00000539417 KLHL34Q8N239 644 aa20.46■□□□□ 0.87
RPAIN-206ENST00000539417 NFIXQ14938 502 aa20.44■□□□□ 0.86
RPAIN-206ENST00000539417 HDGFL1Q5TGJ6 251 aa20.44■□□□□ 0.86
RPAIN-206ENST00000539417 TBC1D9BQ66K14 1250 aa20.44■□□□□ 0.86
RPAIN-206ENST00000539417 SYT17Q9BSW7 474 aa20.44■□□□□ 0.86
RPAIN-206ENST00000539417 CHPF2Q9P2E5 772 aa20.44■□□□□ 0.86
RPAIN-206ENST00000539417 HLFQ16534 295 aa20.43■□□□□ 0.86
RPAIN-206ENST00000539417 NLGN2Q8NFZ4 835 aa20.43■□□□□ 0.86
RPAIN-206ENST00000539417 ERBB4Q15303 1308 aa20.43■□□□□ 0.86
RPAIN-206ENST00000539417 POLRMTO00411 1230 aaKnown RBP20.43■□□□□ 0.86
RPAIN-206ENST00000539417 HOXB7P09629 217 aa20.43■□□□□ 0.86
RPAIN-206ENST00000539417 BICDL1Q6ZP65 573 aa20.43■□□□□ 0.86
RPAIN-206ENST00000539417 CDCA7LQ96GN5 454 aa20.42■□□□□ 0.86
RPAIN-206ENST00000539417 TCERG1O14776 1098 aaKnown RBP20.41■□□□□ 0.86
RPAIN-206ENST00000539417 EXOSC9Q06265 439 aaKnown RBP20.41■□□□□ 0.86
RPAIN-206ENST00000539417 NPM2Q86SE8 214 aaKnown RBP20.41■□□□□ 0.86
RPAIN-206ENST00000539417 DDX21Q9NR30 783 aaKnown RBP eCLIP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms