RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 APAF1O14727 1248 aa17.08■□□□□ 0.32
VPS28-216ENST00000533806 STARD3NLO95772 234 aa17.08■□□□□ 0.32
VPS28-216ENST00000533806 MSL1Q68DK7 614 aa17.08■□□□□ 0.32
VPS28-216ENST00000533806 BABAM1Q9NWV8 329 aa17.08■□□□□ 0.32
VPS28-216ENST00000533806 USP16Q9Y5T5 823 aa17.08■□□□□ 0.32
VPS28-216ENST00000533806 PRAMEF22A3QJZ6 481 aa17.07■□□□□ 0.32
VPS28-216ENST00000533806 SNRPA1P09661 255 aaKnown RBP17.07■□□□□ 0.32
VPS28-216ENST00000533806 GYS1P13807 737 aa17.07■□□□□ 0.32
VPS28-216ENST00000533806 EIF4A1P60842 406 aaKnown RBP17.07■□□□□ 0.32
VPS28-216ENST00000533806 NEUROD2Q15784 382 aa17.07■□□□□ 0.32
VPS28-216ENST00000533806 CHL1O00533 1208 aa17.06■□□□□ 0.32
VPS28-216ENST00000533806 POLD1P28340 1107 aa17.06■□□□□ 0.32
VPS28-216ENST00000533806 EIF5P55010 431 aaKnown RBP17.06■□□□□ 0.32
VPS28-216ENST00000533806 PPP1R1BQ9UD71 204 aaPredicted RBP17.06■□□□□ 0.32
VPS28-216ENST00000533806 GIGYF1O75420 1035 aaPredicted RBP17.05■□□□□ 0.32
VPS28-216ENST00000533806 RFC4P35249 363 aa17.05■□□□□ 0.32
VPS28-216ENST00000533806 FHDC1Q9C0D6 1143 aaPredicted RBP17.05■□□□□ 0.32
VPS28-216ENST00000533806 USP42Q9H9J4 1324 aaKnown RBP17.04■□□□□ 0.32
VPS28-216ENST00000533806 A1BGP04217 495 aa17.04■□□□□ 0.32
VPS28-216ENST00000533806 NLGN1Q8N2Q7 840 aa17.04■□□□□ 0.32
VPS28-216ENST00000533806 SYT17Q9BSW7 474 aa17.04■□□□□ 0.32
VPS28-216ENST00000533806 KDM3BQ7LBC6 1761 aa17.04■□□□□ 0.32
VPS28-216ENST00000533806 CANXP27824 592 aaKnown RBP17.03■□□□□ 0.32
VPS28-216ENST00000533806 IL6STP40189 918 aaPredicted RBP17.03■□□□□ 0.32
VPS28-216ENST00000533806 NCBP3Q53F19 620 aaKnown RBP17.03■□□□□ 0.32
VPS28-216ENST00000533806 SRP68Q9UHB9 627 aaKnown RBP17.03■□□□□ 0.32
VPS28-216ENST00000533806 COL15A1P39059 1388 aa17.02■□□□□ 0.32
VPS28-216ENST00000533806 ZNF853P0CG23 659 aa17.02■□□□□ 0.32
VPS28-216ENST00000533806 NARFQ9UHQ1 456 aa17.02■□□□□ 0.32
VPS28-216ENST00000533806 TSPYL4Q9UJ04 414 aa17.02■□□□□ 0.32
VPS28-216ENST00000533806 NBPF26B4DH59 902 aa17.01■□□□□ 0.31
VPS28-216ENST00000533806 CCDC27Q2M243 656 aa17.01■□□□□ 0.31
VPS28-216ENST00000533806 NBPF10Q6P3W6 841 aaKnown RBP17.01■□□□□ 0.31
VPS28-216ENST00000533806 NBPF15Q8N660 670 aa17.01■□□□□ 0.31
VPS28-216ENST00000533806 BCL2L12Q9HB09 334 aa17.01■□□□□ 0.31
VPS28-216ENST00000533806 C4AP0C0L4 1744 aa17.01■□□□□ 0.31
VPS28-216ENST00000533806 MMP10P09238 476 aa17■□□□□ 0.31
VPS28-216ENST00000533806 FKBP8Q14318 412 aa17■□□□□ 0.31
VPS28-216ENST00000533806 CFAP44Q96MT7 982 aa17■□□□□ 0.31
VPS28-216ENST00000533806 TM4SF1P30408 202 aa16.99■□□□□ 0.31
VPS28-216ENST00000533806 USPL1Q5W0Q7 1092 aa16.99■□□□□ 0.31
VPS28-216ENST00000533806 A0A087WZG4 1122 aa16.98■□□□□ 0.31
VPS28-216ENST00000533806 ZPR1O75312 459 aa16.98■□□□□ 0.31
VPS28-216ENST00000533806 CD2APQ9Y5K6 639 aa16.98■□□□□ 0.31
VPS28-216ENST00000533806 PIP4K2AP48426 406 aaPredicted RBP16.97■□□□□ 0.31
VPS28-216ENST00000533806 WWC1Q8IX03 1113 aa16.97■□□□□ 0.31
VPS28-216ENST00000533806 IFT57Q9NWB7 429 aa16.97■□□□□ 0.31
VPS28-216ENST00000533806 DDR1Q08345 913 aa16.96■□□□□ 0.31
VPS28-216ENST00000533806 KRT24Q2M2I5 525 aa16.96■□□□□ 0.31
VPS28-216ENST00000533806 NLGN2Q8NFZ4 835 aa16.96■□□□□ 0.31
VPS28-216ENST00000533806 MBIPQ9NS73 344 aa16.96■□□□□ 0.31
VPS28-216ENST00000533806 TBC1D2BQ9UPU7 963 aa16.96■□□□□ 0.31
VPS28-216ENST00000533806 CCER2I3L3R5 266 aa16.95■□□□□ 0.3
VPS28-216ENST00000533806 POLRMTO00411 1230 aaKnown RBP16.95■□□□□ 0.3
VPS28-216ENST00000533806 CAMTA2O94983 1202 aa16.95■□□□□ 0.3
VPS28-216ENST00000533806 CALD1Q05682 793 aaKnown RBP16.95■□□□□ 0.3
VPS28-216ENST00000533806 PDIA6Q15084 440 aa16.95■□□□□ 0.3
VPS28-216ENST00000533806 LRP10Q7Z4F1 713 aa16.95■□□□□ 0.3
VPS28-216ENST00000533806 FAM9BQ8IZU0 186 aa16.95■□□□□ 0.3
VPS28-216ENST00000533806 GOLGB1Q14789 3259 aaKnown RBP16.95■□□□□ 0.3
VPS28-216ENST00000533806 NFIXQ14938 502 aa16.94■□□□□ 0.3
VPS28-216ENST00000533806 LAS1LQ9Y4W2 734 aaKnown RBP16.94■□□□□ 0.3
VPS28-216ENST00000533806 UTRNP46939 3433 aa16.94■□□□□ 0.3
VPS28-216ENST00000533806 ERBB4Q15303 1308 aa16.94■□□□□ 0.3
VPS28-216ENST00000533806 SENP3-EIF4A1A0A087X0R7 540 aa16.93■□□□□ 0.3
VPS28-216ENST00000533806 RGL2O15211 777 aa16.93■□□□□ 0.3
VPS28-216ENST00000533806 GNAI1P63096 354 aa16.93■□□□□ 0.3
VPS28-216ENST00000533806 DZIP3Q86Y13 1208 aaKnown RBP16.93■□□□□ 0.3
VPS28-216ENST00000533806 LAMB4A4D0S4 1761 aa16.92■□□□□ 0.3
VPS28-216ENST00000533806 HOXB7P09629 217 aa16.92■□□□□ 0.3
VPS28-216ENST00000533806 ZNF330Q9Y3S2 320 aaPredicted RBP16.92■□□□□ 0.3
VPS28-216ENST00000533806 PARP3Q9Y6F1 533 aa16.92■□□□□ 0.3
VPS28-216ENST00000533806 C10orf71Q711Q0 1435 aa16.92■□□□□ 0.3
VPS28-216ENST00000533806 IL16Q14005 1332 aa16.92■□□□□ 0.3
VPS28-216ENST00000533806 CLEC4GQ6UXB4 293 aa16.91■□□□□ 0.3
VPS28-216ENST00000533806 NGEFQ8N5V2 710 aa16.91■□□□□ 0.3
VPS28-216ENST00000533806 TBC1D9BQ66K14 1250 aa16.9■□□□□ 0.3
VPS28-216ENST00000533806 DIEXFQ68CQ4 756 aaKnown RBP16.9■□□□□ 0.3
VPS28-216ENST00000533806 KLHL34Q8N239 644 aa16.9■□□□□ 0.3
VPS28-216ENST00000533806 SCN7AQ01118 1682 aa16.89■□□□□ 0.29
VPS28-216ENST00000533806 EIF2S2P20042 333 aaKnown RBP16.89■□□□□ 0.29
VPS28-216ENST00000533806 PROSER3Q2NL68 480 aa16.89■□□□□ 0.29
VPS28-216ENST00000533806 WDR63Q8IWG1 891 aa16.89■□□□□ 0.29
VPS28-216ENST00000533806 ERVV-1B6SEH8 477 aa16.88■□□□□ 0.29
VPS28-216ENST00000533806 SERPINB2P05120 415 aa16.88■□□□□ 0.29
VPS28-216ENST00000533806 MYL6BP14649 208 aa16.88■□□□□ 0.29
VPS28-216ENST00000533806 TGFB2P61812 414 aa16.88■□□□□ 0.29
VPS28-216ENST00000533806 DUSP27Q5VZP5 1158 aa16.88■□□□□ 0.29
VPS28-216ENST00000533806 TTLL7Q6ZT98 887 aa16.88■□□□□ 0.29
VPS28-216ENST00000533806 NPM2Q86SE8 214 aaKnown RBP16.88■□□□□ 0.29
VPS28-216ENST00000533806 C8orf58Q8NAV2 365 aa16.88■□□□□ 0.29
VPS28-216ENST00000533806 ZNF521Q96K83 1311 aa16.88■□□□□ 0.29
VPS28-216ENST00000533806 KIF13BQ9NQT8 1826 aa16.87■□□□□ 0.29
VPS28-216ENST00000533806 HLFQ16534 295 aa16.87■□□□□ 0.29
VPS28-216ENST00000533806 DDX21Q9NR30 783 aaKnown RBP eCLIP16.87■□□□□ 0.29
VPS28-216ENST00000533806 PXDNLA1KZ92 1463 aa16.86■□□□□ 0.29
VPS28-216ENST00000533806 KCNA3P22001 575 aa16.86■□□□□ 0.29
VPS28-216ENST00000533806 BICDL1Q6ZP65 573 aa16.86■□□□□ 0.29
VPS28-216ENST00000533806 MIER1Q8N108 512 aa16.86■□□□□ 0.29
VPS28-216ENST00000533806 TSR2Q969E8 191 aaKnown RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms