RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 BABAM1Q9NWV8 329 aa26.07■■□□□ 1.76
CPSF1-209ENST00000532725 USP16Q9Y5T5 823 aa26.06■■□□□ 1.76
CPSF1-209ENST00000532725 PRAMEF22A3QJZ6 481 aa26.05■■□□□ 1.76
CPSF1-209ENST00000532725 EIF4A1P60842 406 aaKnown RBP26.05■■□□□ 1.76
CPSF1-209ENST00000532725 ZBTB1Q9Y2K1 713 aa26.05■■□□□ 1.76
CPSF1-209ENST00000532725 MSL1Q68DK7 614 aa26.04■■□□□ 1.76
CPSF1-209ENST00000532725 PPP1R1BQ9UD71 204 aaPredicted RBP26.04■■□□□ 1.76
CPSF1-209ENST00000532725 CHL1O00533 1208 aa26.03■■□□□ 1.76
CPSF1-209ENST00000532725 RFC4P35249 363 aa26.03■■□□□ 1.76
CPSF1-209ENST00000532725 TSPYL4Q9UJ04 414 aa26.03■■□□□ 1.76
CPSF1-209ENST00000532725 SOS1Q07889 1333 aaPredicted RBP26.03■■□□□ 1.76
CPSF1-209ENST00000532725 A1BGP04217 495 aa26.02■■□□□ 1.76
CPSF1-209ENST00000532725 POLD1P28340 1107 aa26.02■■□□□ 1.76
CPSF1-209ENST00000532725 ARXQ96QS3 562 aa26.02■■□□□ 1.76
CPSF1-209ENST00000532725 GIGYF1O75420 1035 aaPredicted RBP26.01■■□□□ 1.75
CPSF1-209ENST00000532725 CANXP27824 592 aaKnown RBP26.01■■□□□ 1.75
CPSF1-209ENST00000532725 COL24A1Q17RW2 1714 aa26.01■■□□□ 1.75
CPSF1-209ENST00000532725 FAM9BQ8IZU0 186 aa26.01■■□□□ 1.75
CPSF1-209ENST00000532725 EIF5P55010 431 aaKnown RBP26■■□□□ 1.75
CPSF1-209ENST00000532725 NCBP3Q53F19 620 aaKnown RBP25.99■■□□□ 1.75
CPSF1-209ENST00000532725 KDM3BQ7LBC6 1761 aa25.98■■□□□ 1.75
CPSF1-209ENST00000532725 GYS1P13807 737 aa25.98■■□□□ 1.75
CPSF1-209ENST00000532725 DIEXFQ68CQ4 756 aaKnown RBP25.98■■□□□ 1.75
CPSF1-209ENST00000532725 CFAP44Q96MT7 982 aa25.98■■□□□ 1.75
CPSF1-209ENST00000532725 SENP3-EIF4A1A0A087X0R7 540 aa25.97■■□□□ 1.75
CPSF1-209ENST00000532725 ZNF853P0CG23 659 aa25.97■■□□□ 1.75
CPSF1-209ENST00000532725 CCDC27Q2M243 656 aa25.97■■□□□ 1.75
CPSF1-209ENST00000532725 NLGN1Q8N2Q7 840 aa25.97■■□□□ 1.75
CPSF1-209ENST00000532725 SRP68Q9UHB9 627 aaKnown RBP25.97■■□□□ 1.75
CPSF1-209ENST00000532725 LAS1LQ9Y4W2 734 aaKnown RBP25.97■■□□□ 1.75
CPSF1-209ENST00000532725 CCER2I3L3R5 266 aa25.96■■□□□ 1.75
CPSF1-209ENST00000532725 IL6STP40189 918 aaPredicted RBP25.96■■□□□ 1.75
CPSF1-209ENST00000532725 USP42Q9H9J4 1324 aaKnown RBP25.95■■□□□ 1.75
CPSF1-209ENST00000532725 NARFQ9UHQ1 456 aa25.95■■□□□ 1.74
CPSF1-209ENST00000532725 COL15A1P39059 1388 aa25.95■■□□□ 1.74
CPSF1-209ENST00000532725 FHDC1Q9C0D6 1143 aaPredicted RBP25.94■■□□□ 1.74
CPSF1-209ENST00000532725 A0A087WZG4 1122 aa25.93■■□□□ 1.74
CPSF1-209ENST00000532725 NBPF26B4DH59 902 aa25.93■■□□□ 1.74
CPSF1-209ENST00000532725 ZPR1O75312 459 aa25.93■■□□□ 1.74
CPSF1-209ENST00000532725 PIP4K2AP48426 406 aaPredicted RBP25.93■■□□□ 1.74
CPSF1-209ENST00000532725 CALD1Q05682 793 aaKnown RBP25.93■■□□□ 1.74
CPSF1-209ENST00000532725 NBPF10Q6P3W6 841 aaKnown RBP25.93■■□□□ 1.74
CPSF1-209ENST00000532725 WWC1Q8IX03 1113 aa25.93■■□□□ 1.74
CPSF1-209ENST00000532725 NBPF15Q8N660 670 aa25.93■■□□□ 1.74
CPSF1-209ENST00000532725 SYT17Q9BSW7 474 aa25.93■■□□□ 1.74
CPSF1-209ENST00000532725 FKBP8Q14318 412 aa25.92■■□□□ 1.74
CPSF1-209ENST00000532725 USPL1Q5W0Q7 1092 aa25.92■■□□□ 1.74
CPSF1-209ENST00000532725 IFT57Q9NWB7 429 aa25.92■■□□□ 1.74
CPSF1-209ENST00000532725 MBIPQ9NS73 344 aa25.91■■□□□ 1.74
CPSF1-209ENST00000532725 MMP10P09238 476 aa25.9■■□□□ 1.74
CPSF1-209ENST00000532725 GNAI1P63096 354 aa25.9■■□□□ 1.74
CPSF1-209ENST00000532725 BCL2L12Q9HB09 334 aa25.9■■□□□ 1.74
CPSF1-209ENST00000532725 C4AP0C0L4 1744 aa25.89■■□□□ 1.74
CPSF1-209ENST00000532725 KRT24Q2M2I5 525 aa25.89■■□□□ 1.74
CPSF1-209ENST00000532725 TBC1D2BQ9UPU7 963 aa25.89■■□□□ 1.74
CPSF1-209ENST00000532725 ZNF330Q9Y3S2 320 aaPredicted RBP25.89■■□□□ 1.74
CPSF1-209ENST00000532725 TM4SF1P30408 202 aa25.88■■□□□ 1.73
CPSF1-209ENST00000532725 MIER1Q8N108 512 aa25.88■■□□□ 1.73
CPSF1-209ENST00000532725 SALL2Q9Y467 1007 aaPredicted RBP25.87■■□□□ 1.73
CPSF1-209ENST00000532725 NPM2Q86SE8 214 aaKnown RBP25.86■■□□□ 1.73
CPSF1-209ENST00000532725 EIF2S2P20042 333 aaKnown RBP25.85■■□□□ 1.73
CPSF1-209ENST00000532725 NGEFQ8N5V2 710 aa25.85■■□□□ 1.73
CPSF1-209ENST00000532725 CAMTA2O94983 1202 aa25.84■■□□□ 1.73
CPSF1-209ENST00000532725 DZIP3Q86Y13 1208 aaKnown RBP25.84■■□□□ 1.73
CPSF1-209ENST00000532725 CD2APQ9Y5K6 639 aa25.84■■□□□ 1.73
CPSF1-209ENST00000532725 PDIA6Q15084 440 aa25.83■■□□□ 1.73
CPSF1-209ENST00000532725 WDR63Q8IWG1 891 aa25.83■■□□□ 1.73
CPSF1-209ENST00000532725 KLHL34Q8N239 644 aa25.83■■□□□ 1.73
CPSF1-209ENST00000532725 PARP3Q9Y6F1 533 aa25.83■■□□□ 1.73
CPSF1-209ENST00000532725 IL16Q14005 1332 aa25.83■■□□□ 1.73
CPSF1-209ENST00000532725 ERBB4Q15303 1308 aa25.83■■□□□ 1.73
CPSF1-209ENST00000532725 DDR1Q08345 913 aa25.82■■□□□ 1.72
CPSF1-209ENST00000532725 NFIXQ14938 502 aa25.82■■□□□ 1.72
CPSF1-209ENST00000532725 HOXB7P09629 217 aa25.81■■□□□ 1.72
CPSF1-209ENST00000532725 DUSP27Q5VZP5 1158 aa25.81■■□□□ 1.72
CPSF1-209ENST00000532725 LAMB4A4D0S4 1761 aa25.8■■□□□ 1.72
CPSF1-209ENST00000532725 POLRMTO00411 1230 aaKnown RBP25.8■■□□□ 1.72
CPSF1-209ENST00000532725 MYL6BP14649 208 aa25.8■■□□□ 1.72
CPSF1-209ENST00000532725 LRP10Q7Z4F1 713 aa25.8■■□□□ 1.72
CPSF1-209ENST00000532725 NLGN2Q8NFZ4 835 aa25.8■■□□□ 1.72
CPSF1-209ENST00000532725 C8orf58Q8NAV2 365 aa25.79■■□□□ 1.72
CPSF1-209ENST00000532725 NECTIN2Q92692 538 aa25.79■■□□□ 1.72
CPSF1-209ENST00000532725 PROSER3Q2NL68 480 aa25.78■■□□□ 1.72
CPSF1-209ENST00000532725 TBC1D9BQ66K14 1250 aa25.78■■□□□ 1.72
CPSF1-209ENST00000532725 CLEC4GQ6UXB4 293 aa25.78■■□□□ 1.72
CPSF1-209ENST00000532725 TSR2Q969E8 191 aaKnown RBP25.78■■□□□ 1.72
CPSF1-209ENST00000532725 RGL2O15211 777 aa25.77■■□□□ 1.72
CPSF1-209ENST00000532725 ELL2O00472 640 aaPredicted RBP25.76■■□□□ 1.71
CPSF1-209ENST00000532725 BICDL1Q6ZP65 573 aa25.76■■□□□ 1.71
CPSF1-209ENST00000532725 TTLL7Q6ZT98 887 aa25.76■■□□□ 1.71
CPSF1-209ENST00000532725 ANXA1P04083 346 aa25.75■■□□□ 1.71
CPSF1-209ENST00000532725 HDGFL1Q5TGJ6 251 aa25.75■■□□□ 1.71
CPSF1-209ENST00000532725 DDX21Q9NR30 783 aaKnown RBP eCLIP25.75■■□□□ 1.71
CPSF1-209ENST00000532725 ZNF521Q96K83 1311 aa25.74■■□□□ 1.71
CPSF1-209ENST00000532725 ERVV-1B6SEH8 477 aa25.74■■□□□ 1.71
CPSF1-209ENST00000532725 SERPINB2P05120 415 aa25.74■■□□□ 1.71
CPSF1-209ENST00000532725 HLFQ16534 295 aa25.74■■□□□ 1.71
CPSF1-209ENST00000532725 TSPYL6Q8N831 410 aa25.74■■□□□ 1.71
CPSF1-209ENST00000532725 SPINK5Q9NQ38 1064 aaPredicted RBP25.74■■□□□ 1.71
CPSF1-209ENST00000532725 CHPF2Q9P2E5 772 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms