RNA–Protein interactions for RNA: ENST00000531336.1

SMPD1-206, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 2

Gene SMPD1, Length 650 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-206ENST00000531336 ZNF521Q96K83 1311 aa17.98■□□□□ 0.47
SMPD1-206ENST00000531336 STARD3NLO95772 234 aa17.98■□□□□ 0.47
SMPD1-206ENST00000531336 KRT24Q2M2I5 525 aa17.98■□□□□ 0.47
SMPD1-206ENST00000531336 SMIM5Q71RC9 77 aa17.98■□□□□ 0.47
SMPD1-206ENST00000531336 AMIGO3Q86WK7 504 aa17.98■□□□□ 0.47
SMPD1-206ENST00000531336 TEX13AQ9BXU3 409 aaPredicted RBP17.98■□□□□ 0.47
SMPD1-206ENST00000531336 CCDC87Q9NVE4 849 aa17.98■□□□□ 0.47
SMPD1-206ENST00000531336 PNPLA7Q6ZV29 1317 aa17.98■□□□□ 0.47
SMPD1-206ENST00000531336 GIGYF1O75420 1035 aaPredicted RBP17.97■□□□□ 0.47
SMPD1-206ENST00000531336 HNRNPUQ00839 825 aaKnown RBP eCLIP17.97■□□□□ 0.47
SMPD1-206ENST00000531336 RC3H1Q5TC82 1133 aaKnown RBP17.97■□□□□ 0.47
SMPD1-206ENST00000531336 USP16Q9Y5T5 823 aa17.97■□□□□ 0.47
SMPD1-206ENST00000531336 INTS5Q6P9B9 1019 aaKnown RBP17.96■□□□□ 0.47
SMPD1-206ENST00000531336 ZBTB1Q9Y2K1 713 aa17.96■□□□□ 0.47
SMPD1-206ENST00000531336 RTCBQ9Y3I0 505 aaKnown RBP17.96■□□□□ 0.47
SMPD1-206ENST00000531336 FANCIQ9NVI1 1328 aa17.96■□□□□ 0.46
SMPD1-206ENST00000531336 MSH5O43196 834 aa17.95■□□□□ 0.46
SMPD1-206ENST00000531336 PDGFDQ9GZP0 370 aaPredicted RBP17.95■□□□□ 0.46
SMPD1-206ENST00000531336 SPINK5Q9NQ38 1064 aaPredicted RBP17.95■□□□□ 0.46
SMPD1-206ENST00000531336 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.94■□□□□ 0.46
SMPD1-206ENST00000531336 RPS6KA4O75676 772 aa17.94■□□□□ 0.46
SMPD1-206ENST00000531336 A1BGP04217 495 aa17.94■□□□□ 0.46
SMPD1-206ENST00000531336 CANXP27824 592 aaKnown RBP17.94■□□□□ 0.46
SMPD1-206ENST00000531336 SSFA2P28290 1259 aa17.94■□□□□ 0.46
SMPD1-206ENST00000531336 PIP4K2AP48426 406 aaPredicted RBP17.94■□□□□ 0.46
SMPD1-206ENST00000531336 COL23A1Q86Y22 540 aaPredicted RBP17.94■□□□□ 0.46
SMPD1-206ENST00000531336 SOS1Q07889 1333 aaPredicted RBP17.94■□□□□ 0.46
SMPD1-206ENST00000531336 GOLGA2Q08379 1002 aa17.93■□□□□ 0.46
SMPD1-206ENST00000531336 ZNF330Q9Y3S2 320 aaPredicted RBP17.93■□□□□ 0.46
SMPD1-206ENST00000531336 COL15A1P39059 1388 aa17.92■□□□□ 0.46
SMPD1-206ENST00000531336 EIF2S2P20042 333 aaKnown RBP17.92■□□□□ 0.46
SMPD1-206ENST00000531336 DUSP27Q5VZP5 1158 aa17.92■□□□□ 0.46
SMPD1-206ENST00000531336 FLAD1Q8NFF5 587 aa17.92■□□□□ 0.46
SMPD1-206ENST00000531336 NECTIN2Q92692 538 aa17.92■□□□□ 0.46
SMPD1-206ENST00000531336 MYH16Q9H6N6 1097 aa17.92■□□□□ 0.46
SMPD1-206ENST00000531336 SCN7AQ01118 1682 aa17.91■□□□□ 0.46
SMPD1-206ENST00000531336 ELL2O00472 640 aaPredicted RBP17.91■□□□□ 0.46
SMPD1-206ENST00000531336 C8orf58Q8NAV2 365 aa17.91■□□□□ 0.46
SMPD1-206ENST00000531336 BCORQ6W2J9 1755 aa17.9■□□□□ 0.46
SMPD1-206ENST00000531336 ADRA2BP18089 450 aa17.9■□□□□ 0.46
SMPD1-206ENST00000531336 TRAPPC3LQ5T215 181 aa17.9■□□□□ 0.46
SMPD1-206ENST00000531336 E9PSI1 815 aa17.89■□□□□ 0.45
SMPD1-206ENST00000531336 ZBTB7AO95365 584 aa17.89■□□□□ 0.45
SMPD1-206ENST00000531336 HOXB7P09629 217 aa17.89■□□□□ 0.45
SMPD1-206ENST00000531336 HDGFL1Q5TGJ6 251 aa17.89■□□□□ 0.45
SMPD1-206ENST00000531336 TSPYL6Q8N831 410 aa17.89■□□□□ 0.45
SMPD1-206ENST00000531336 ARHGEF1Q92888 912 aaKnown RBP17.89■□□□□ 0.45
SMPD1-206ENST00000531336 CDCA7LQ96GN5 454 aa17.89■□□□□ 0.45
SMPD1-206ENST00000531336 NBPF26B4DH59 902 aa17.88■□□□□ 0.45
SMPD1-206ENST00000531336 RFC4P35249 363 aa17.88■□□□□ 0.45
SMPD1-206ENST00000531336 IL6STP40189 918 aaPredicted RBP17.88■□□□□ 0.45
SMPD1-206ENST00000531336 EIF5P55010 431 aaKnown RBP17.88■□□□□ 0.45
SMPD1-206ENST00000531336 EXOSC9Q06265 439 aaKnown RBP17.88■□□□□ 0.45
SMPD1-206ENST00000531336 NBPF10Q6P3W6 841 aaKnown RBP17.88■□□□□ 0.45
SMPD1-206ENST00000531336 NBPF15Q8N660 670 aa17.88■□□□□ 0.45
SMPD1-206ENST00000531336 COL24A1Q17RW2 1714 aa17.87■□□□□ 0.45
SMPD1-206ENST00000531336 MYL6BP14649 208 aa17.87■□□□□ 0.45
SMPD1-206ENST00000531336 SLFN5Q08AF3 891 aa17.87■□□□□ 0.45
SMPD1-206ENST00000531336 TWISTNBQ3B726 338 aaPredicted RBP17.87■□□□□ 0.45
SMPD1-206ENST00000531336 MSL1Q68DK7 614 aa17.87■□□□□ 0.45
SMPD1-206ENST00000531336 NPM2Q86SE8 214 aaKnown RBP17.87■□□□□ 0.45
SMPD1-206ENST00000531336 ERBB4Q15303 1308 aa17.87■□□□□ 0.45
SMPD1-206ENST00000531336 ANXA1P04083 346 aa17.86■□□□□ 0.45
SMPD1-206ENST00000531336 ARXQ96QS3 562 aa17.86■□□□□ 0.45
SMPD1-206ENST00000531336 SRP68Q9UHB9 627 aaKnown RBP17.86■□□□□ 0.45
SMPD1-206ENST00000531336 ATF5Q9Y2D1 282 aaPredicted RBP17.86■□□□□ 0.45
SMPD1-206ENST00000531336 ZBED9Q6R2W3 1325 aa17.86■□□□□ 0.45
SMPD1-206ENST00000531336 LRP5O75197 1615 aa17.86■□□□□ 0.45
SMPD1-206ENST00000531336 A0A087WZG4 1122 aa17.85■□□□□ 0.45
SMPD1-206ENST00000531336 PROSER3Q2NL68 480 aa17.85■□□□□ 0.45
SMPD1-206ENST00000531336 SLC16A10Q8TF71 515 aa17.85■□□□□ 0.45
SMPD1-206ENST00000531336 MTFR1LQ9H019 292 aa17.85■□□□□ 0.45
SMPD1-206ENST00000531336 USP42Q9H9J4 1324 aaKnown RBP17.85■□□□□ 0.45
SMPD1-206ENST00000531336 CHPF2Q9P2E5 772 aa17.85■□□□□ 0.45
SMPD1-206ENST00000531336 ZPR1O75312 459 aa17.84■□□□□ 0.45
SMPD1-206ENST00000531336 TBC1D2BQ9UPU7 963 aa17.84■□□□□ 0.45
SMPD1-206ENST00000531336 PDIA6Q15084 440 aa17.83■□□□□ 0.44
SMPD1-206ENST00000531336 USPL1Q5W0Q7 1092 aa17.83■□□□□ 0.44
SMPD1-206ENST00000531336 DZIP3Q86Y13 1208 aaKnown RBP17.83■□□□□ 0.44
SMPD1-206ENST00000531336 TCERG1O14776 1098 aaKnown RBP17.82■□□□□ 0.44
SMPD1-206ENST00000531336 CCDC30Q5VVM6 783 aa17.82■□□□□ 0.44
SMPD1-206ENST00000531336 SPON1Q9HCB6 807 aa17.82■□□□□ 0.44
SMPD1-206ENST00000531336 DDX21Q9NR30 783 aaKnown RBP eCLIP17.82■□□□□ 0.44
SMPD1-206ENST00000531336 DBF4Q9UBU7 674 aaPredicted RBP17.82■□□□□ 0.44
SMPD1-206ENST00000531336 NARFQ9UHQ1 456 aa17.82■□□□□ 0.44
SMPD1-206ENST00000531336 NUP98P52948 1817 aa17.82■□□□□ 0.44
SMPD1-206ENST00000531336 CACNA1FO60840 1977 aa17.81■□□□□ 0.44
SMPD1-206ENST00000531336 GYS1P13807 737 aa17.81■□□□□ 0.44
SMPD1-206ENST00000531336 TRMT2AQ8IZ69 625 aaKnown RBP17.81■□□□□ 0.44
SMPD1-206ENST00000531336 YTHDC1Q96MU7 727 aaKnown RBP17.81■□□□□ 0.44
SMPD1-206ENST00000531336 VAMP4O75379 141 aa17.8■□□□□ 0.44
SMPD1-206ENST00000531336 CAMTA2O94983 1202 aa17.8■□□□□ 0.44
SMPD1-206ENST00000531336 KIF6Q6ZMV9 814 aa17.8■□□□□ 0.44
SMPD1-206ENST00000531336 TTLL7Q6ZT98 887 aa17.8■□□□□ 0.44
SMPD1-206ENST00000531336 LRP10Q7Z4F1 713 aa17.8■□□□□ 0.44
SMPD1-206ENST00000531336 CHMP4AQ9BY43 222 aa17.8■□□□□ 0.44
SMPD1-206ENST00000531336 ARFGEF2Q9Y6D5 1785 aa17.79■□□□□ 0.44
SMPD1-206ENST00000531336 AIMP1Q12904 312 aaKnown RBP17.79■□□□□ 0.44
SMPD1-206ENST00000531336 FKBP8Q14318 412 aa17.79■□□□□ 0.44
SMPD1-206ENST00000531336 XAGE3Q8WTP9 111 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms