RNA–Protein interactions for RNA: ENST00000527551.1

USH1C-206, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 371 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-206ENST00000527551 PNPLA7Q6ZV29 1317 aa16.66■□□□□ 0.26
USH1C-206ENST00000527551 GNPATO15228 680 aa16.65■□□□□ 0.26
USH1C-206ENST00000527551 RPS6KA4O75676 772 aa16.65■□□□□ 0.26
USH1C-206ENST00000527551 COL24A1Q17RW2 1714 aa16.65■□□□□ 0.26
USH1C-206ENST00000527551 GIGYF1O75420 1035 aaPredicted RBP16.64■□□□□ 0.25
USH1C-206ENST00000527551 INTS5Q6P9B9 1019 aaKnown RBP16.64■□□□□ 0.25
USH1C-206ENST00000527551 LRP5O75197 1615 aa16.63■□□□□ 0.25
USH1C-206ENST00000527551 C4AP0C0L4 1744 aa16.63■□□□□ 0.25
USH1C-206ENST00000527551 LAS1LQ9Y4W2 734 aaKnown RBP16.63■□□□□ 0.25
USH1C-206ENST00000527551 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.62■□□□□ 0.25
USH1C-206ENST00000527551 HOXB7P09629 217 aa16.62■□□□□ 0.25
USH1C-206ENST00000527551 TRAPPC3LQ5T215 181 aa16.62■□□□□ 0.25
USH1C-206ENST00000527551 CHMP4AQ9BY43 222 aa16.62■□□□□ 0.25
USH1C-206ENST00000527551 MBIPQ9NS73 344 aa16.62■□□□□ 0.25
USH1C-206ENST00000527551 SOS1Q07889 1333 aaPredicted RBP16.62■□□□□ 0.25
USH1C-206ENST00000527551 COL23A1Q86Y22 540 aaPredicted RBP16.61■□□□□ 0.25
USH1C-206ENST00000527551 MTFR1LQ9H019 292 aa16.61■□□□□ 0.25
USH1C-206ENST00000527551 ERBB4Q15303 1308 aa16.61■□□□□ 0.25
USH1C-206ENST00000527551 IL6STP40189 918 aaPredicted RBP16.6■□□□□ 0.25
USH1C-206ENST00000527551 USP16Q9Y5T5 823 aa16.6■□□□□ 0.25
USH1C-206ENST00000527551 ZNF521Q96K83 1311 aa16.6■□□□□ 0.25
USH1C-206ENST00000527551 A0A087WZG4 1122 aa16.59■□□□□ 0.25
USH1C-206ENST00000527551 SPON1Q9HCB6 807 aa16.59■□□□□ 0.25
USH1C-206ENST00000527551 ZBTB1Q9Y2K1 713 aa16.59■□□□□ 0.25
USH1C-206ENST00000527551 MSH5O43196 834 aa16.58■□□□□ 0.24
USH1C-206ENST00000527551 PHF14O94880 888 aa16.58■□□□□ 0.24
USH1C-206ENST00000527551 RFC4P35249 363 aa16.58■□□□□ 0.24
USH1C-206ENST00000527551 EIF5P55010 431 aaKnown RBP16.58■□□□□ 0.24
USH1C-206ENST00000527551 NPM2Q86SE8 214 aaKnown RBP16.58■□□□□ 0.24
USH1C-206ENST00000527551 ARHGEF1Q92888 912 aaKnown RBP16.58■□□□□ 0.24
USH1C-206ENST00000527551 MYH16Q9H6N6 1097 aa16.58■□□□□ 0.24
USH1C-206ENST00000527551 SALL2Q9Y467 1007 aaPredicted RBP16.58■□□□□ 0.24
USH1C-206ENST00000527551 COL15A1P39059 1388 aa16.58■□□□□ 0.24
USH1C-206ENST00000527551 PRAMEF22A3QJZ6 481 aa16.57■□□□□ 0.24
USH1C-206ENST00000527551 AMIGO3Q86WK7 504 aa16.57■□□□□ 0.24
USH1C-206ENST00000527551 PDGFDQ9GZP0 370 aaPredicted RBP16.57■□□□□ 0.24
USH1C-206ENST00000527551 A1BGP04217 495 aa16.56■□□□□ 0.24
USH1C-206ENST00000527551 CANXP27824 592 aaKnown RBP16.56■□□□□ 0.24
USH1C-206ENST00000527551 USP42Q9H9J4 1324 aaKnown RBP16.55■□□□□ 0.24
USH1C-206ENST00000527551 SENP3-EIF4A1A0A087X0R7 540 aa16.55■□□□□ 0.24
USH1C-206ENST00000527551 RGL2O15211 777 aa16.55■□□□□ 0.24
USH1C-206ENST00000527551 GOLGA2Q08379 1002 aa16.55■□□□□ 0.24
USH1C-206ENST00000527551 NLGN1Q8N2Q7 840 aa16.55■□□□□ 0.24
USH1C-206ENST00000527551 BCORQ6W2J9 1755 aa16.55■□□□□ 0.24
USH1C-206ENST00000527551 SCN7AQ01118 1682 aa16.55■□□□□ 0.24
USH1C-206ENST00000527551 CACNA1FO60840 1977 aa16.55■□□□□ 0.24
USH1C-206ENST00000527551 FANCIQ9NVI1 1328 aa16.54■□□□□ 0.24
USH1C-206ENST00000527551 E9PSI1 815 aa16.54■□□□□ 0.24
USH1C-206ENST00000527551 ZPR1O75312 459 aa16.54■□□□□ 0.24
USH1C-206ENST00000527551 ZBTB7AO95365 584 aa16.54■□□□□ 0.24
USH1C-206ENST00000527551 DUSP27Q5VZP5 1158 aa16.54■□□□□ 0.24
USH1C-206ENST00000527551 NARFQ9UHQ1 456 aa16.54■□□□□ 0.24
USH1C-206ENST00000527551 NBPF26B4DH59 902 aa16.53■□□□□ 0.24
USH1C-206ENST00000527551 POLD1P28340 1107 aa16.53■□□□□ 0.24
USH1C-206ENST00000527551 NBPF10Q6P3W6 841 aaKnown RBP16.53■□□□□ 0.24
USH1C-206ENST00000527551 NBPF15Q8N660 670 aa16.53■□□□□ 0.24
USH1C-206ENST00000527551 TSR2Q969E8 191 aaKnown RBP16.53■□□□□ 0.24
USH1C-206ENST00000527551 HDGFL1Q5TGJ6 251 aa16.52■□□□□ 0.24
USH1C-206ENST00000527551 SGIP1Q9BQI5 828 aa16.52■□□□□ 0.24
USH1C-206ENST00000527551 GYS1P13807 737 aa16.51■□□□□ 0.23
USH1C-206ENST00000527551 EIF2S2P20042 333 aaKnown RBP16.51■□□□□ 0.23
USH1C-206ENST00000527551 PTGER2P43116 358 aa16.51■□□□□ 0.23
USH1C-206ENST00000527551 KRT24Q2M2I5 525 aa16.51■□□□□ 0.23
USH1C-206ENST00000527551 SMIM5Q71RC9 77 aa16.51■□□□□ 0.23
USH1C-206ENST00000527551 C8orf58Q8NAV2 365 aa16.51■□□□□ 0.23
USH1C-206ENST00000527551 DDX21Q9NR30 783 aaKnown RBP eCLIP16.51■□□□□ 0.23
USH1C-206ENST00000527551 DBF4Q9UBU7 674 aaPredicted RBP16.51■□□□□ 0.23
USH1C-206ENST00000527551 ATF5Q9Y2D1 282 aaPredicted RBP16.51■□□□□ 0.23
USH1C-206ENST00000527551 HNRNPUQ00839 825 aaKnown RBP eCLIP16.5■□□□□ 0.23
USH1C-206ENST00000527551 TWISTNBQ3B726 338 aaPredicted RBP16.5■□□□□ 0.23
USH1C-206ENST00000527551 CCDC30Q5VVM6 783 aa16.5■□□□□ 0.23
USH1C-206ENST00000527551 DZIP3Q86Y13 1208 aaKnown RBP16.5■□□□□ 0.23
USH1C-206ENST00000527551 ZNF330Q9Y3S2 320 aaPredicted RBP16.5■□□□□ 0.23
USH1C-206ENST00000527551 SLFN5Q08AF3 891 aa16.49■□□□□ 0.23
USH1C-206ENST00000527551 PDIA6Q15084 440 aa16.49■□□□□ 0.23
USH1C-206ENST00000527551 USPL1Q5W0Q7 1092 aa16.49■□□□□ 0.23
USH1C-206ENST00000527551 CLEC4GQ6UXB4 293 aa16.49■□□□□ 0.23
USH1C-206ENST00000527551 SPINK5Q9NQ38 1064 aaPredicted RBP16.49■□□□□ 0.23
USH1C-206ENST00000527551 HYPKQ9NX55 129 aa16.49■□□□□ 0.23
USH1C-206ENST00000527551 NUP98P52948 1817 aa16.48■□□□□ 0.23
USH1C-206ENST00000527551 ERVV-1B6SEH8 477 aa16.48■□□□□ 0.23
USH1C-206ENST00000527551 MYL6BP14649 208 aa16.48■□□□□ 0.23
USH1C-206ENST00000527551 SRP68Q9UHB9 627 aaKnown RBP16.48■□□□□ 0.23
USH1C-206ENST00000527551 ZNF652Q9Y2D9 606 aa16.48■□□□□ 0.23
USH1C-206ENST00000527551 ELL2O00472 640 aaPredicted RBP16.47■□□□□ 0.23
USH1C-206ENST00000527551 CAMTA2O94983 1202 aa16.47■□□□□ 0.23
USH1C-206ENST00000527551 PIP4K2AP48426 406 aaPredicted RBP16.47■□□□□ 0.23
USH1C-206ENST00000527551 EXOSC9Q06265 439 aaKnown RBP16.47■□□□□ 0.23
USH1C-206ENST00000527551 KIF6Q6ZMV9 814 aa16.47■□□□□ 0.23
USH1C-206ENST00000527551 LRP10Q7Z4F1 713 aa16.47■□□□□ 0.23
USH1C-206ENST00000527551 TRMT2AQ8IZ69 625 aaKnown RBP16.47■□□□□ 0.23
USH1C-206ENST00000527551 ARXQ96QS3 562 aa16.47■□□□□ 0.23
USH1C-206ENST00000527551 CHPF2Q9P2E5 772 aa16.47■□□□□ 0.23
USH1C-206ENST00000527551 PPP1R1BQ9UD71 204 aaPredicted RBP16.47■□□□□ 0.23
USH1C-206ENST00000527551 TBC1D2BQ9UPU7 963 aa16.47■□□□□ 0.23
USH1C-206ENST00000527551 ZBED9Q6R2W3 1325 aa16.46■□□□□ 0.23
USH1C-206ENST00000527551 MSL1Q68DK7 614 aa16.46■□□□□ 0.23
USH1C-206ENST00000527551 TSPYL6Q8N831 410 aa16.46■□□□□ 0.23
USH1C-206ENST00000527551 STK31Q9BXU1 1019 aa16.46■□□□□ 0.23
USH1C-206ENST00000527551 MAP3K15Q6ZN16 1313 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms