RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 CCDC87Q9NVE4 849 aa26.95■■□□□ 1.9
CD44-222ENST00000526025 GOLGA2Q08379 1002 aa26.94■■□□□ 1.9
CD44-222ENST00000526025 SSFA2P28290 1259 aa26.93■■□□□ 1.9
CD44-222ENST00000526025 HNRNPUQ00839 825 aaKnown RBP eCLIP26.93■■□□□ 1.9
CD44-222ENST00000526025 INTS5Q6P9B9 1019 aaKnown RBP26.93■■□□□ 1.9
CD44-222ENST00000526025 FLAD1Q8NFF5 587 aa26.93■■□□□ 1.9
CD44-222ENST00000526025 TFCP2L1Q9NZI6 479 aa26.93■■□□□ 1.9
CD44-222ENST00000526025 FANCIQ9NVI1 1328 aa26.92■■□□□ 1.9
CD44-222ENST00000526025 RPS6KA4O75676 772 aa26.92■■□□□ 1.9
CD44-222ENST00000526025 ADRA2BP18089 450 aa26.92■■□□□ 1.9
CD44-222ENST00000526025 USP16Q9Y5T5 823 aa26.92■■□□□ 1.9
CD44-222ENST00000526025 ERBB4Q15303 1308 aa26.91■■□□□ 1.9
CD44-222ENST00000526025 PRAMEF22A3QJZ6 481 aa26.91■■□□□ 1.9
CD44-222ENST00000526025 E9PSI1 815 aa26.91■■□□□ 1.9
CD44-222ENST00000526025 GNPATO15228 680 aa26.91■■□□□ 1.9
CD44-222ENST00000526025 C4AP0C0L4 1744 aa26.9■■□□□ 1.9
CD44-222ENST00000526025 R3HDM1Q15032 1099 aaKnown RBP26.9■■□□□ 1.9
CD44-222ENST00000526025 TSR2Q969E8 191 aaKnown RBP26.9■■□□□ 1.9
CD44-222ENST00000526025 RTCBQ9Y3I0 505 aaKnown RBP26.9■■□□□ 1.9
CD44-222ENST00000526025 ZBED9Q6R2W3 1325 aa26.9■■□□□ 1.9
CD44-222ENST00000526025 PNPLA7Q6ZV29 1317 aa26.9■■□□□ 1.9
CD44-222ENST00000526025 CHMP4AQ9BY43 222 aa26.89■■□□□ 1.9
CD44-222ENST00000526025 SPINK5Q9NQ38 1064 aaPredicted RBP26.89■■□□□ 1.9
CD44-222ENST00000526025 ZBTB1Q9Y2K1 713 aa26.88■■□□□ 1.89
CD44-222ENST00000526025 SLFN5Q08AF3 891 aa26.87■■□□□ 1.89
CD44-222ENST00000526025 DUSP27Q5VZP5 1158 aa26.87■■□□□ 1.89
CD44-222ENST00000526025 CACNA1FO60840 1977 aa26.87■■□□□ 1.89
CD44-222ENST00000526025 IL6STP40189 918 aaPredicted RBP26.86■■□□□ 1.89
CD44-222ENST00000526025 KRT24Q2M2I5 525 aa26.86■■□□□ 1.89
CD44-222ENST00000526025 COL24A1Q17RW2 1714 aa26.85■■□□□ 1.89
CD44-222ENST00000526025 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.85■■□□□ 1.89
CD44-222ENST00000526025 TRMT2AQ8IZ69 625 aaKnown RBP26.85■■□□□ 1.89
CD44-222ENST00000526025 PSDA5PKW4 1024 aaPredicted RBP26.84■■□□□ 1.89
CD44-222ENST00000526025 A1BGP04217 495 aa26.84■■□□□ 1.89
CD44-222ENST00000526025 EIF5P55010 431 aaKnown RBP26.84■■□□□ 1.89
CD44-222ENST00000526025 AMIGO3Q86WK7 504 aa26.84■■□□□ 1.89
CD44-222ENST00000526025 C8orf58Q8NAV2 365 aa26.84■■□□□ 1.89
CD44-222ENST00000526025 SLC16A10Q8TF71 515 aa26.84■■□□□ 1.89
CD44-222ENST00000526025 TRAPPC3LQ5T215 181 aa26.83■■□□□ 1.89
CD44-222ENST00000526025 COL23A1Q86Y22 540 aaPredicted RBP26.83■■□□□ 1.89
CD44-222ENST00000526025 COL15A1P39059 1388 aa26.83■■□□□ 1.88
CD44-222ENST00000526025 CANXP27824 592 aaKnown RBP26.82■■□□□ 1.88
CD44-222ENST00000526025 A0A087WZG4 1122 aa26.81■■□□□ 1.88
CD44-222ENST00000526025 NBPF26B4DH59 902 aa26.81■■□□□ 1.88
CD44-222ENST00000526025 TWISTNBQ3B726 338 aaPredicted RBP26.81■■□□□ 1.88
CD44-222ENST00000526025 HDGFL1Q5TGJ6 251 aa26.81■■□□□ 1.88
CD44-222ENST00000526025 NBPF10Q6P3W6 841 aaKnown RBP26.81■■□□□ 1.88
CD44-222ENST00000526025 NBPF15Q8N660 670 aa26.81■■□□□ 1.88
CD44-222ENST00000526025 ARHGEF1Q92888 912 aaKnown RBP26.8■■□□□ 1.88
CD44-222ENST00000526025 SCN7AQ01118 1682 aa26.79■■□□□ 1.88
CD44-222ENST00000526025 BCORQ6W2J9 1755 aa26.79■■□□□ 1.88
CD44-222ENST00000526025 PHF14O94880 888 aa26.79■■□□□ 1.88
CD44-222ENST00000526025 EIF2S2P20042 333 aaKnown RBP26.79■■□□□ 1.88
CD44-222ENST00000526025 EXOSC9Q06265 439 aaKnown RBP26.79■■□□□ 1.88
CD44-222ENST00000526025 TSPYL6Q8N831 410 aa26.79■■□□□ 1.88
CD44-222ENST00000526025 CDCA7LQ96GN5 454 aa26.79■■□□□ 1.88
CD44-222ENST00000526025 RFC4P35249 363 aa26.77■■□□□ 1.88
CD44-222ENST00000526025 PDIA6Q15084 440 aa26.77■■□□□ 1.88
CD44-222ENST00000526025 NPM2Q86SE8 214 aaKnown RBP26.77■■□□□ 1.88
CD44-222ENST00000526025 DDX21Q9NR30 783 aaKnown RBP eCLIP26.77■■□□□ 1.88
CD44-222ENST00000526025 DBF4Q9UBU7 674 aaPredicted RBP26.77■■□□□ 1.88
CD44-222ENST00000526025 USP42Q9H9J4 1324 aaKnown RBP26.76■■□□□ 1.87
CD44-222ENST00000526025 ELL2O00472 640 aaPredicted RBP26.76■■□□□ 1.87
CD44-222ENST00000526025 RGL2O15211 777 aa26.76■■□□□ 1.87
CD44-222ENST00000526025 CCDC30Q5VVM6 783 aa26.76■■□□□ 1.87
CD44-222ENST00000526025 PDGFDQ9GZP0 370 aaPredicted RBP26.76■■□□□ 1.87
CD44-222ENST00000526025 VAMP4O75379 141 aa26.75■■□□□ 1.87
CD44-222ENST00000526025 LRP10Q7Z4F1 713 aa26.75■■□□□ 1.87
CD44-222ENST00000526025 MTFR1LQ9H019 292 aa26.75■■□□□ 1.87
CD44-222ENST00000526025 NARFQ9UHQ1 456 aa26.75■■□□□ 1.87
CD44-222ENST00000526025 CT47B1P0C2W7 299 aaPredicted RBP26.74■■□□□ 1.87
CD44-222ENST00000526025 SMIM5Q71RC9 77 aa26.74■■□□□ 1.87
CD44-222ENST00000526025 MSH5O43196 834 aa26.73■■□□□ 1.87
CD44-222ENST00000526025 ZNF428Q96B54 188 aa26.73■■□□□ 1.87
CD44-222ENST00000526025 CHPF2Q9P2E5 772 aa26.73■■□□□ 1.87
CD44-222ENST00000526025 LRP5O75197 1615 aa26.72■■□□□ 1.87
CD44-222ENST00000526025 PIP4K2AP48426 406 aaPredicted RBP26.72■■□□□ 1.87
CD44-222ENST00000526025 HYPKQ9NX55 129 aa26.72■■□□□ 1.87
CD44-222ENST00000526025 ZPR1O75312 459 aa26.71■■□□□ 1.87
CD44-222ENST00000526025 MYL6BP14649 208 aa26.7■■□□□ 1.86
CD44-222ENST00000526025 PROSER3Q2NL68 480 aa26.7■■□□□ 1.86
CD44-222ENST00000526025 DZIP3Q86Y13 1208 aaKnown RBP26.7■■□□□ 1.86
CD44-222ENST00000526025 NECTIN2Q92692 538 aa26.7■■□□□ 1.86
CD44-222ENST00000526025 STK31Q9BXU1 1019 aa26.7■■□□□ 1.86
CD44-222ENST00000526025 ZNF330Q9Y3S2 320 aaPredicted RBP26.7■■□□□ 1.86
CD44-222ENST00000526025 NUP98P52948 1817 aa26.69■■□□□ 1.86
CD44-222ENST00000526025 GYS1P13807 737 aa26.69■■□□□ 1.86
CD44-222ENST00000526025 NLGN1Q8N2Q7 840 aa26.69■■□□□ 1.86
CD44-222ENST00000526025 SPON1Q9HCB6 807 aa26.68■■□□□ 1.86
CD44-222ENST00000526025 ERVV-1B6SEH8 477 aa26.67■■□□□ 1.86
CD44-222ENST00000526025 CAMTA2O94983 1202 aa26.67■■□□□ 1.86
CD44-222ENST00000526025 ZBTB7AO95365 584 aa26.67■■□□□ 1.86
CD44-222ENST00000526025 USPL1Q5W0Q7 1092 aa26.67■■□□□ 1.86
CD44-222ENST00000526025 CLEC4GQ6UXB4 293 aa26.67■■□□□ 1.86
CD44-222ENST00000526025 SRP68Q9UHB9 627 aaKnown RBP26.67■■□□□ 1.86
CD44-222ENST00000526025 KIF6Q6ZMV9 814 aa26.66■■□□□ 1.86
CD44-222ENST00000526025 TBC1D2BQ9UPU7 963 aa26.66■■□□□ 1.86
CD44-222ENST00000526025 MAP3K15Q6ZN16 1313 aa26.65■■□□□ 1.86
CD44-222ENST00000526025 ANXA1P04083 346 aa26.65■■□□□ 1.86
CD44-222ENST00000526025 SGIP1Q9BQI5 828 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms