RNA–Protein interactions for RNA: ENST00000515572.5

SNF8-215, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 2

Gene SNF8, Length 687 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-215ENST00000515572 CCDC87Q9NVE4 849 aa15.48■□□□□ 0.07
SNF8-215ENST00000515572 PSDA5PKW4 1024 aaPredicted RBP15.47■□□□□ 0.07
SNF8-215ENST00000515572 GNPATO15228 680 aa15.47■□□□□ 0.07
SNF8-215ENST00000515572 SSFA2P28290 1259 aa15.47■□□□□ 0.07
SNF8-215ENST00000515572 RTCBQ9Y3I0 505 aaKnown RBP15.47■□□□□ 0.07
SNF8-215ENST00000515572 RPS6KA4O75676 772 aa15.46■□□□□ 0.07
SNF8-215ENST00000515572 ADRA2BP18089 450 aa15.46■□□□□ 0.07
SNF8-215ENST00000515572 INTS5Q6P9B9 1019 aaKnown RBP15.46■□□□□ 0.07
SNF8-215ENST00000515572 PNPLA7Q6ZV29 1317 aa15.45■□□□□ 0.06
SNF8-215ENST00000515572 HOXB7P09629 217 aa15.45■□□□□ 0.06
SNF8-215ENST00000515572 MYH16Q9H6N6 1097 aa15.45■□□□□ 0.06
SNF8-215ENST00000515572 C4AP0C0L4 1744 aa15.45■□□□□ 0.06
SNF8-215ENST00000515572 SOS1Q07889 1333 aaPredicted RBP15.44■□□□□ 0.06
SNF8-215ENST00000515572 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.44■□□□□ 0.06
SNF8-215ENST00000515572 USP16Q9Y5T5 823 aa15.44■□□□□ 0.06
SNF8-215ENST00000515572 PRAMEF22A3QJZ6 481 aa15.43■□□□□ 0.06
SNF8-215ENST00000515572 GOLGA2Q08379 1002 aa15.43■□□□□ 0.06
SNF8-215ENST00000515572 TRAPPC3LQ5T215 181 aa15.43■□□□□ 0.06
SNF8-215ENST00000515572 SLC16A10Q8TF71 515 aa15.43■□□□□ 0.06
SNF8-215ENST00000515572 ZBTB1Q9Y2K1 713 aa15.43■□□□□ 0.06
SNF8-215ENST00000515572 ERBB4Q15303 1308 aa15.43■□□□□ 0.06
SNF8-215ENST00000515572 PHF14O94880 888 aa15.42■□□□□ 0.06
SNF8-215ENST00000515572 IL6STP40189 918 aaPredicted RBP15.42■□□□□ 0.06
SNF8-215ENST00000515572 HNRNPUQ00839 825 aaKnown RBP eCLIP15.42■□□□□ 0.06
SNF8-215ENST00000515572 COL23A1Q86Y22 540 aaPredicted RBP15.42■□□□□ 0.06
SNF8-215ENST00000515572 TSR2Q969E8 191 aaKnown RBP15.42■□□□□ 0.06
SNF8-215ENST00000515572 CHMP4AQ9BY43 222 aa15.42■□□□□ 0.06
SNF8-215ENST00000515572 FANCIQ9NVI1 1328 aa15.42■□□□□ 0.06
SNF8-215ENST00000515572 COL24A1Q17RW2 1714 aa15.41■□□□□ 0.06
SNF8-215ENST00000515572 E9PSI1 815 aa15.41■□□□□ 0.06
SNF8-215ENST00000515572 MSH5O43196 834 aa15.41■□□□□ 0.06
SNF8-215ENST00000515572 CANXP27824 592 aaKnown RBP15.41■□□□□ 0.06
SNF8-215ENST00000515572 DUSP27Q5VZP5 1158 aa15.41■□□□□ 0.06
SNF8-215ENST00000515572 NPM2Q86SE8 214 aaKnown RBP15.41■□□□□ 0.06
SNF8-215ENST00000515572 AMIGO3Q86WK7 504 aa15.41■□□□□ 0.06
SNF8-215ENST00000515572 COL15A1P39059 1388 aa15.4■□□□□ 0.06
SNF8-215ENST00000515572 A0A087WZG4 1122 aa15.4■□□□□ 0.06
SNF8-215ENST00000515572 A1BGP04217 495 aa15.4■□□□□ 0.06
SNF8-215ENST00000515572 RFC4P35249 363 aa15.4■□□□□ 0.06
SNF8-215ENST00000515572 EIF5P55010 431 aaKnown RBP15.4■□□□□ 0.06
SNF8-215ENST00000515572 KRT24Q2M2I5 525 aa15.4■□□□□ 0.06
SNF8-215ENST00000515572 ARHGEF1Q92888 912 aaKnown RBP15.4■□□□□ 0.06
SNF8-215ENST00000515572 PDGFDQ9GZP0 370 aaPredicted RBP15.4■□□□□ 0.06
SNF8-215ENST00000515572 MTFR1LQ9H019 292 aa15.39■□□□□ 0.05
SNF8-215ENST00000515572 SPINK5Q9NQ38 1064 aaPredicted RBP15.39■□□□□ 0.05
SNF8-215ENST00000515572 NBPF26B4DH59 902 aa15.38■□□□□ 0.05
SNF8-215ENST00000515572 EIF2S2P20042 333 aaKnown RBP15.38■□□□□ 0.05
SNF8-215ENST00000515572 SLFN5Q08AF3 891 aa15.38■□□□□ 0.05
SNF8-215ENST00000515572 HDGFL1Q5TGJ6 251 aa15.38■□□□□ 0.05
SNF8-215ENST00000515572 NBPF10Q6P3W6 841 aaKnown RBP15.38■□□□□ 0.05
SNF8-215ENST00000515572 NBPF15Q8N660 670 aa15.38■□□□□ 0.05
SNF8-215ENST00000515572 C8orf58Q8NAV2 365 aa15.38■□□□□ 0.05
SNF8-215ENST00000515572 BCORQ6W2J9 1755 aa15.38■□□□□ 0.05
SNF8-215ENST00000515572 LRP5O75197 1615 aa15.38■□□□□ 0.05
SNF8-215ENST00000515572 CACNA1FO60840 1977 aa15.38■□□□□ 0.05
SNF8-215ENST00000515572 USP42Q9H9J4 1324 aaKnown RBP15.38■□□□□ 0.05
SNF8-215ENST00000515572 SCN7AQ01118 1682 aa15.38■□□□□ 0.05
SNF8-215ENST00000515572 TWISTNBQ3B726 338 aaPredicted RBP15.37■□□□□ 0.05
SNF8-215ENST00000515572 SMIM5Q71RC9 77 aa15.37■□□□□ 0.05
SNF8-215ENST00000515572 ZBED9Q6R2W3 1325 aa15.37■□□□□ 0.05
SNF8-215ENST00000515572 ELL2O00472 640 aaPredicted RBP15.36■□□□□ 0.05
SNF8-215ENST00000515572 ZPR1O75312 459 aa15.36■□□□□ 0.05
SNF8-215ENST00000515572 ZBTB7AO95365 584 aa15.36■□□□□ 0.05
SNF8-215ENST00000515572 SPON1Q9HCB6 807 aa15.36■□□□□ 0.05
SNF8-215ENST00000515572 DDX21Q9NR30 783 aaKnown RBP eCLIP15.36■□□□□ 0.05
SNF8-215ENST00000515572 DBF4Q9UBU7 674 aaPredicted RBP15.36■□□□□ 0.05
SNF8-215ENST00000515572 NARFQ9UHQ1 456 aa15.36■□□□□ 0.05
SNF8-215ENST00000515572 ZNF330Q9Y3S2 320 aaPredicted RBP15.36■□□□□ 0.05
SNF8-215ENST00000515572 MYL6BP14649 208 aa15.35■□□□□ 0.05
SNF8-215ENST00000515572 PIP4K2AP48426 406 aaPredicted RBP15.35■□□□□ 0.05
SNF8-215ENST00000515572 EXOSC9Q06265 439 aaKnown RBP15.35■□□□□ 0.05
SNF8-215ENST00000515572 CCDC30Q5VVM6 783 aa15.35■□□□□ 0.05
SNF8-215ENST00000515572 NLGN1Q8N2Q7 840 aa15.35■□□□□ 0.05
SNF8-215ENST00000515572 TSPYL6Q8N831 410 aa15.35■□□□□ 0.05
SNF8-215ENST00000515572 RGL2O15211 777 aa15.34■□□□□ 0.05
SNF8-215ENST00000515572 PDIA6Q15084 440 aa15.34■□□□□ 0.05
SNF8-215ENST00000515572 DZIP3Q86Y13 1208 aaKnown RBP15.34■□□□□ 0.05
SNF8-215ENST00000515572 TRMT2AQ8IZ69 625 aaKnown RBP15.34■□□□□ 0.05
SNF8-215ENST00000515572 NECTIN2Q92692 538 aa15.34■□□□□ 0.05
SNF8-215ENST00000515572 CDCA7LQ96GN5 454 aa15.34■□□□□ 0.05
SNF8-215ENST00000515572 CHPF2Q9P2E5 772 aa15.34■□□□□ 0.05
SNF8-215ENST00000515572 GYS1P13807 737 aa15.33■□□□□ 0.04
SNF8-215ENST00000515572 USPL1Q5W0Q7 1092 aa15.33■□□□□ 0.04
SNF8-215ENST00000515572 HYPKQ9NX55 129 aa15.33■□□□□ 0.04
SNF8-215ENST00000515572 VAMP4O75379 141 aa15.32■□□□□ 0.04
SNF8-215ENST00000515572 POLD1P28340 1107 aa15.32■□□□□ 0.04
SNF8-215ENST00000515572 KIF6Q6ZMV9 814 aa15.32■□□□□ 0.04
SNF8-215ENST00000515572 LRP10Q7Z4F1 713 aa15.32■□□□□ 0.04
SNF8-215ENST00000515572 ARXQ96QS3 562 aa15.32■□□□□ 0.04
SNF8-215ENST00000515572 STK31Q9BXU1 1019 aa15.32■□□□□ 0.04
SNF8-215ENST00000515572 SRP68Q9UHB9 627 aaKnown RBP15.32■□□□□ 0.04
SNF8-215ENST00000515572 TBC1D2BQ9UPU7 963 aa15.32■□□□□ 0.04
SNF8-215ENST00000515572 ATF5Q9Y2D1 282 aaPredicted RBP15.32■□□□□ 0.04
SNF8-215ENST00000515572 NUP98P52948 1817 aa15.31■□□□□ 0.04
SNF8-215ENST00000515572 CAMTA2O94983 1202 aa15.31■□□□□ 0.04
SNF8-215ENST00000515572 PROSER3Q2NL68 480 aa15.31■□□□□ 0.04
SNF8-215ENST00000515572 MSL1Q68DK7 614 aa15.31■□□□□ 0.04
SNF8-215ENST00000515572 ZNF652Q9Y2D9 606 aa15.31■□□□□ 0.04
SNF8-215ENST00000515572 ERVV-1B6SEH8 477 aa15.3■□□□□ 0.04
SNF8-215ENST00000515572 PTGER2P43116 358 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms