RNA–Protein interactions for RNA: ENST00000512258.1

MSH3-202, Transcript of mutS homolog 3, humanhuman

TSL 3

Gene MSH3, Length 677 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-202ENST00000512258 HCN2Q9UL51 889 aa8.55□□□□□ -1.04
MSH3-202ENST00000512258 TDRD9Q8NDG6 1382 aaKnown RBP8.55□□□□□ -1.04
MSH3-202ENST00000512258 RUSC2Q8N2Y8 1516 aa8.54□□□□□ -1.04
MSH3-202ENST00000512258 ABCA10Q8WWZ4 1543 aa8.54□□□□□ -1.04
MSH3-202ENST00000512258 AQRO60306 1485 aaKnown RBP eCLIP8.54□□□□□ -1.04
MSH3-202ENST00000512258 FGFR3P22607 806 aa8.54□□□□□ -1.04
MSH3-202ENST00000512258 RFC5P40937 340 aa8.54□□□□□ -1.04
MSH3-202ENST00000512258 GJD4Q96KN9 370 aaPredicted RBP8.54□□□□□ -1.04
MSH3-202ENST00000512258 PCDHB11Q9Y5F2 797 aa8.54□□□□□ -1.04
MSH3-202ENST00000512258 MSX1P28360 303 aa8.53□□□□□ -1.04
MSH3-202ENST00000512258 C4orf17Q53FE4 359 aa8.53□□□□□ -1.04
MSH3-202ENST00000512258 RNF20Q5VTR2 975 aa8.53□□□□□ -1.04
MSH3-202ENST00000512258 RNF135Q8IUD6 432 aa8.53□□□□□ -1.04
MSH3-202ENST00000512258 GNRH1P01148 92 aa8.52□□□□□ -1.05
MSH3-202ENST00000512258 KLF15Q9UIH9 416 aa8.52□□□□□ -1.05
MSH3-202ENST00000512258 EIF4G3O43432 1585 aaKnown RBP8.52□□□□□ -1.05
MSH3-202ENST00000512258 ARAFP10398 606 aa8.51□□□□□ -1.05
MSH3-202ENST00000512258 FAM9AQ8IZU1 332 aaPredicted RBP8.51□□□□□ -1.05
MSH3-202ENST00000512258 XAGE2Q96GT9 111 aa8.51□□□□□ -1.05
MSH3-202ENST00000512258 ZSCAN10Q96SZ4 725 aaPredicted RBP8.51□□□□□ -1.05
MSH3-202ENST00000512258 DNAAF2Q9NVR5 837 aaKnown RBP8.51□□□□□ -1.05
MSH3-202ENST00000512258 NOP53Q9NZM5 478 aaKnown RBP8.51□□□□□ -1.05
MSH3-202ENST00000512258 ABCA5Q8WWZ7 1642 aa8.51□□□□□ -1.05
MSH3-202ENST00000512258 NEURL1BA8MQ27 555 aa8.5□□□□□ -1.05
MSH3-202ENST00000512258 PIK3R2O00459 728 aa8.5□□□□□ -1.05
MSH3-202ENST00000512258 RSPO4Q2I0M5 234 aaPredicted RBP8.5□□□□□ -1.05
MSH3-202ENST00000512258 TRIM11Q96F44 468 aa8.5□□□□□ -1.05
MSH3-202ENST00000512258 CRISPLD1Q9H336 500 aa8.5□□□□□ -1.05
MSH3-202ENST00000512258 GPBP1L1Q9HC44 474 aaPredicted RBP8.5□□□□□ -1.05
MSH3-202ENST00000512258 CHSY3Q70JA7 882 aa8.49□□□□□ -1.05
MSH3-202ENST00000512258 KDM4CQ9H3R0 1056 aa8.49□□□□□ -1.05
MSH3-202ENST00000512258 GAPVD1Q14C86 1478 aa8.49□□□□□ -1.05
MSH3-202ENST00000512258 GPR37L1O60883 481 aa8.48□□□□□ -1.05
MSH3-202ENST00000512258 NKAPLQ5M9Q1 402 aa8.48□□□□□ -1.05
MSH3-202ENST00000512258 DDRGK1Q96HY6 314 aa8.48□□□□□ -1.05
MSH3-202ENST00000512258 KIF27Q86VH2 1401 aa8.47□□□□□ -1.05
MSH3-202ENST00000512258 CSB-PGBD3P0DP91 1061 aa8.47□□□□□ -1.05
MSH3-202ENST00000512258 EFHC2Q5JST6 749 aa8.47□□□□□ -1.05
MSH3-202ENST00000512258 FCHSD1Q86WN1 690 aa8.47□□□□□ -1.05
MSH3-202ENST00000512258 PGBD3Q8N328 593 aa8.47□□□□□ -1.05
MSH3-202ENST00000512258 CDCA7Q9BWT1 371 aaPredicted RBP8.47□□□□□ -1.05
MSH3-202ENST00000512258 KRTAP9-9Q9BYP9 154 aa8.47□□□□□ -1.05
MSH3-202ENST00000512258 KRTAP9-4Q9BYQ2 154 aa8.47□□□□□ -1.05
MSH3-202ENST00000512258 PBRM1Q86U86 1689 aa8.46□□□□□ -1.05
MSH3-202ENST00000512258 GATA4P43694 442 aa8.46□□□□□ -1.06
MSH3-202ENST00000512258 MCCD1P59942 119 aaPredicted RBP8.46□□□□□ -1.06
MSH3-202ENST00000512258 NR1H3Q13133 447 aa8.46□□□□□ -1.06
MSH3-202ENST00000512258 GNASQ5JWF2 1037 aa8.46□□□□□ -1.06
MSH3-202ENST00000512258 ATP1B4Q9UN42 357 aaPredicted RBP8.46□□□□□ -1.06
MSH3-202ENST00000512258 GRIN2BQ13224 1484 aa8.45□□□□□ -1.06
MSH3-202ENST00000512258 CCDC85AQ96PX6 553 aaPredicted RBP8.45□□□□□ -1.06
MSH3-202ENST00000512258 ZCCHC2Q9C0B9 1178 aaKnown RBP8.45□□□□□ -1.06
MSH3-202ENST00000512258 SNAPC4Q5SXM2 1469 aa8.45□□□□□ -1.06
MSH3-202ENST00000512258 STAU1O95793 577 aaKnown RBP8.44□□□□□ -1.06
MSH3-202ENST00000512258 TMEM214Q6NUQ4 689 aaKnown RBP8.44□□□□□ -1.06
MSH3-202ENST00000512258 ATP4AP20648 1035 aa8.43□□□□□ -1.06
MSH3-202ENST00000512258 PPARGC1BQ86YN6 1023 aaKnown RBP8.43□□□□□ -1.06
MSH3-202ENST00000512258 ERICH3Q5RHP9 1530 aa8.43□□□□□ -1.06
MSH3-202ENST00000512258 KRTAP19-1Q8IUB9 90 aa8.42□□□□□ -1.06
MSH3-202ENST00000512258 RHBDD1Q8TEB9 315 aa8.42□□□□□ -1.06
MSH3-202ENST00000512258 PLVAPQ9BX97 442 aa8.42□□□□□ -1.06
MSH3-202ENST00000512258 TPSG1Q9NRR2 321 aa8.42□□□□□ -1.06
MSH3-202ENST00000512258 PCDHGC4Q9Y5F7 938 aa8.42□□□□□ -1.06
MSH3-202ENST00000512258 ADAMTS12P58397 1594 aa8.41□□□□□ -1.06
MSH3-202ENST00000512258 EEA1Q15075 1411 aa8.41□□□□□ -1.06
MSH3-202ENST00000512258 SPATA31C1P0DKV0 1188 aa8.41□□□□□ -1.06
MSH3-202ENST00000512258 ADH6P28332 368 aa8.41□□□□□ -1.06
MSH3-202ENST00000512258 TMEM259Q4ZIN3 620 aa8.41□□□□□ -1.06
MSH3-202ENST00000512258 FAM182BQ5T319 152 aa8.41□□□□□ -1.06
MSH3-202ENST00000512258 CARMIL1Q5VZK9 1371 aa8.4□□□□□ -1.06
MSH3-202ENST00000512258 TNP2Q05952 138 aa8.4□□□□□ -1.06
MSH3-202ENST00000512258 ARTNQ5T4W7 220 aa8.4□□□□□ -1.06
MSH3-202ENST00000512258 ETNK1Q9HBU6 452 aa8.4□□□□□ -1.06
MSH3-202ENST00000512258 AVENQ9NQS1 362 aaPredicted RBP8.4□□□□□ -1.06
MSH3-202ENST00000512258 MAGI1Q96QZ7 1491 aaPredicted RBP8.39□□□□□ -1.07
MSH3-202ENST00000512258 SCO2A0A1W2PP80 73 aa8.39□□□□□ -1.07
MSH3-202ENST00000512258 DYRK3O43781 588 aa8.39□□□□□ -1.07
MSH3-202ENST00000512258 MAPTP10636 758 aaKnown RBP8.39□□□□□ -1.07
MSH3-202ENST00000512258 CD33P20138 364 aa8.39□□□□□ -1.07
MSH3-202ENST00000512258 FIGNL1Q6PIW4 674 aa8.39□□□□□ -1.07
MSH3-202ENST00000512258 NLRP8Q86W28 1048 aa8.39□□□□□ -1.07
MSH3-202ENST00000512258 MDFIQ99750 246 aa8.39□□□□□ -1.07
MSH3-202ENST00000512258 ESF1Q9H501 851 aaKnown RBP8.39□□□□□ -1.07
MSH3-202ENST00000512258 PRXQ9BXM0 1461 aa8.38□□□□□ -1.07
MSH3-202ENST00000512258 FHAD1B1AJZ9 1412 aa8.38□□□□□ -1.07
MSH3-202ENST00000512258 CUL7Q14999 1698 aa8.38□□□□□ -1.07
MSH3-202ENST00000512258 PLA2G4AP47712 749 aa8.38□□□□□ -1.07
MSH3-202ENST00000512258 TSGA10IPQ3SY00 556 aa8.38□□□□□ -1.07
MSH3-202ENST00000512258 ZNF295-AS1Q8N0V1 137 aa8.38□□□□□ -1.07
MSH3-202ENST00000512258 ZFP64Q9NPA5 681 aa8.38□□□□□ -1.07
MSH3-202ENST00000512258 SYNJ2O15056 1496 aa8.38□□□□□ -1.07
MSH3-202ENST00000512258 CHD1O14646 1710 aa8.37□□□□□ -1.07
MSH3-202ENST00000512258 DCDC2BA2VCK2 349 aa8.37□□□□□ -1.07
MSH3-202ENST00000512258 ATXN7O15265 892 aaPredicted RBP8.37□□□□□ -1.07
MSH3-202ENST00000512258 ESCO1Q5FWF5 840 aa8.37□□□□□ -1.07
MSH3-202ENST00000512258 TBC1D9Q6ZT07 1266 aa8.37□□□□□ -1.07
MSH3-202ENST00000512258 CEP126Q9P2H0 1117 aa8.37□□□□□ -1.07
MSH3-202ENST00000512258 RAPGEF2Q9Y4G8 1499 aa8.37□□□□□ -1.07
MSH3-202ENST00000512258 LOC105371045A0A1W2PR82 267 aa8.36□□□□□ -1.07
MSH3-202ENST00000512258 MYCP01106 439 aaPredicted RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms