RNA–Protein interactions for RNA: ENST00000512258.1

MSH3-202, Transcript of mutS homolog 3, humanhuman

TSL 3

Gene MSH3, Length 677 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-202ENST00000512258 AEBP2Q6ZN18 517 aaPredicted RBP28.76■■■□□ 2.19
MSH3-202ENST00000512258 CHIC1Q5VXU3 224 aa26.86■■□□□ 1.89
MSH3-202ENST00000512258 SENP3Q9H4L4 574 aaPredicted RBP24.44■■□□□ 1.5
MSH3-202ENST00000512258 PHF23Q9BUL5 403 aaPredicted RBP24.12■■□□□ 1.45
MSH3-202ENST00000512258 FOXD1Q16676 465 aa22.92■■□□□ 1.26
MSH3-202ENST00000512258 POTEDQ86YR6 584 aa21.73■■□□□ 1.07
MSH3-202ENST00000512258 MSH5O43196 834 aa21.49■■□□□ 1.03
MSH3-202ENST00000512258 PIAS4Q8N2W9 510 aaPredicted RBP21.24■□□□□ 0.99
MSH3-202ENST00000512258 PLPPR3Q6T4P5 718 aa21.21■□□□□ 0.99
MSH3-202ENST00000512258 PPP6R1Q9UPN7 881 aa21.19■□□□□ 0.98
MSH3-202ENST00000512258 ADRA2BP18089 450 aa21.04■□□□□ 0.96
MSH3-202ENST00000512258 MAPK8IP2Q13387 824 aaPredicted RBP19.47■□□□□ 0.71
MSH3-202ENST00000512258 DMRT2Q9Y5R5 561 aa19.37■□□□□ 0.69
MSH3-202ENST00000512258 SCAF1Q9H7N4 1312 aaKnown RBP19.08■□□□□ 0.65
MSH3-202ENST00000512258 CACNB1Q02641 598 aaPredicted RBP18.66■□□□□ 0.58
MSH3-202ENST00000512258 PPP4R3CPQ6ZMV5 832 aa18.58■□□□□ 0.56
MSH3-202ENST00000512258 HOXD11P31277 338 aaPredicted RBP18.53■□□□□ 0.56
MSH3-202ENST00000512258 DCAF8L1A6NGE4 600 aa18.47■□□□□ 0.55
MSH3-202ENST00000512258 RNF39Q9H2S5 420 aa18.38■□□□□ 0.53
MSH3-202ENST00000512258 CNKSR2Q8WXI2 1034 aa18.29■□□□□ 0.52
MSH3-202ENST00000512258 RNF216Q9NWF9 866 aaPredicted RBP18.25■□□□□ 0.51
MSH3-202ENST00000512258 C1QBPQ07021 282 aaKnown RBP18.03■□□□□ 0.48
MSH3-202ENST00000512258 DNAJC5BQ9UF47 199 aa17.94■□□□□ 0.46
MSH3-202ENST00000512258 NCBP3Q53F19 620 aaKnown RBP17.64■□□□□ 0.41
MSH3-202ENST00000512258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.54■□□□□ 0.4
MSH3-202ENST00000512258 NPM3O75607 178 aaKnown RBP17.52■□□□□ 0.4
MSH3-202ENST00000512258 U3KPZ7 1027 aaPredicted RBP17.24■□□□□ 0.35
MSH3-202ENST00000512258 SPINK5Q9NQ38 1064 aaPredicted RBP17.11■□□□□ 0.33
MSH3-202ENST00000512258 DSG3P32926 999 aa17.09■□□□□ 0.33
MSH3-202ENST00000512258 CAPN15O75808 1086 aa16.99■□□□□ 0.31
MSH3-202ENST00000512258 POTEHQ6S545 545 aa16.91■□□□□ 0.3
MSH3-202ENST00000512258 SLC4A2P04920 1241 aa16.89■□□□□ 0.29
MSH3-202ENST00000512258 KCNA4P22459 653 aa16.86■□□□□ 0.29
MSH3-202ENST00000512258 TRHP20396 242 aaPredicted RBP16.63■□□□□ 0.25
MSH3-202ENST00000512258 ABCB7O75027 752 aa16.61■□□□□ 0.25
MSH3-202ENST00000512258 ZNF219Q9P2Y4 722 aaPredicted RBP16.57■□□□□ 0.24
MSH3-202ENST00000512258 APLP2Q06481 763 aa16.51■□□□□ 0.23
MSH3-202ENST00000512258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.46■□□□□ 0.23
MSH3-202ENST00000512258 HNRNPUL2Q1KMD3 747 aaKnown RBP16.46■□□□□ 0.23
MSH3-202ENST00000512258 SAMD1Q6SPF0 538 aaPredicted RBP16.39■□□□□ 0.21
MSH3-202ENST00000512258 RBM42Q9BTD8 480 aaKnown RBP16.19■□□□□ 0.18
MSH3-202ENST00000512258 MYCNP04198 464 aaPredicted RBP16.15■□□□□ 0.18
MSH3-202ENST00000512258 POLA2Q14181 598 aa16.13■□□□□ 0.17
MSH3-202ENST00000512258 CHRDL2Q6WN34 429 aa16.06■□□□□ 0.16
MSH3-202ENST00000512258 ATF5Q9Y2D1 282 aaPredicted RBP15.93■□□□□ 0.14
MSH3-202ENST00000512258 AKT1S1Q96B36 256 aa15.79■□□□□ 0.12
MSH3-202ENST00000512258 FOXD4L1Q9NU39 408 aa15.79■□□□□ 0.12
MSH3-202ENST00000512258 SLC4A1APQ9BWU0 796 aaKnown RBP15.75■□□□□ 0.11
MSH3-202ENST00000512258 ZBTB12Q9Y330 459 aaPredicted RBP15.69■□□□□ 0.1
MSH3-202ENST00000512258 REM2Q8IYK8 340 aaPredicted RBP15.68■□□□□ 0.1
MSH3-202ENST00000512258 OSCARQ8IYS5 282 aa15.66■□□□□ 0.1
MSH3-202ENST00000512258 SP7Q8TDD2 431 aaPredicted RBP15.66■□□□□ 0.1
MSH3-202ENST00000512258 PIP4P2Q8N4L2 257 aa15.63■□□□□ 0.09
MSH3-202ENST00000512258 ZBTB22O15209 634 aa15.56■□□□□ 0.08
MSH3-202ENST00000512258 PITPNM1O00562 1244 aa15.53■□□□□ 0.08
MSH3-202ENST00000512258 FXR2P51116 673 aaKnown RBP eCLIP15.48■□□□□ 0.07
MSH3-202ENST00000512258 HAX1O00165 279 aa15.36■□□□□ 0.05
MSH3-202ENST00000512258 ATXN8OSP0DMR3 200 aa15.32■□□□□ 0.04
MSH3-202ENST00000512258 EVX2Q03828 476 aa15.3■□□□□ 0.04
MSH3-202ENST00000512258 SPDYE2BA6NHP3 402 aa15.24■□□□□ 0.03
MSH3-202ENST00000512258 SPDYE6P0CI01 402 aa15.24■□□□□ 0.03
MSH3-202ENST00000512258 SPDYE2Q495Y8 402 aa15.24■□□□□ 0.03
MSH3-202ENST00000512258 MKRN4PQ13434 485 aaPredicted RBP15.18■□□□□ 0.02
MSH3-202ENST00000512258 FBLN2P98095 1184 aa15.14■□□□□ 0.01
MSH3-202ENST00000512258 PRKAR2AP13861 404 aaKnown RBP15.08■□□□□ 0
MSH3-202ENST00000512258 SSUH2Q9Y2M2 353 aa15.07■□□□□ 0
MSH3-202ENST00000512258 SPDYE1Q8NFV5 336 aaPredicted RBP15.04■□□□□ -0
MSH3-202ENST00000512258 CLEC11AQ9Y240 323 aa15.02■□□□□ -0
MSH3-202ENST00000512258 C19orf67A6NJJ6 358 aa15□□□□□ -0.01
MSH3-202ENST00000512258 ZNF692Q9BU19 519 aaPredicted RBP14.97□□□□□ -0.01
MSH3-202ENST00000512258 GABBR2O75899 941 aa14.86□□□□□ -0.03
MSH3-202ENST00000512258 CHADLQ6NUI6 762 aa14.86□□□□□ -0.03
MSH3-202ENST00000512258 PABPN1Q86U42 306 aaKnown RBP eCLIP14.78□□□□□ -0.04
MSH3-202ENST00000512258 PRR29P0C7W0 189 aa14.72□□□□□ -0.05
MSH3-202ENST00000512258 LHX8Q68G74 356 aa14.67□□□□□ -0.06
MSH3-202ENST00000512258 POTEIP0CG38 1075 aa14.62□□□□□ -0.07
MSH3-202ENST00000512258 FARP1Q9Y4F1 1045 aaPredicted RBP14.59□□□□□ -0.07
MSH3-202ENST00000512258 CD44P16070 742 aaKnown RBP14.57□□□□□ -0.08
MSH3-202ENST00000512258 CSRNP3Q8WYN3 585 aa14.45□□□□□ -0.1
MSH3-202ENST00000512258 CLCN6P51797 869 aa14.39□□□□□ -0.11
MSH3-202ENST00000512258 CREBZFQ9NS37 354 aa14.38□□□□□ -0.11
MSH3-202ENST00000512258 ZNF579Q8NAF0 562 aaKnown RBP14.36□□□□□ -0.11
MSH3-202ENST00000512258 ZRANB1Q9UGI0 708 aa14.29□□□□□ -0.12
MSH3-202ENST00000512258 DCBLD2Q96PD2 775 aa14.27□□□□□ -0.13
MSH3-202ENST00000512258 GALR2O43603 387 aaPredicted RBP14.24□□□□□ -0.13
MSH3-202ENST00000512258 STAG3Q9UJ98 1225 aa14.21□□□□□ -0.13
MSH3-202ENST00000512258 SPDYE4A6NLX3 237 aa14.14□□□□□ -0.15
MSH3-202ENST00000512258 POTEB2H3BUK9 544 aa14.14□□□□□ -0.15
MSH3-202ENST00000512258 MNX1P50219 401 aaPredicted RBP14.13□□□□□ -0.15
MSH3-202ENST00000512258 OTUD5Q96G74 571 aa14.12□□□□□ -0.15
MSH3-202ENST00000512258 PHF12Q96QT6 1004 aa14.12□□□□□ -0.15
MSH3-202ENST00000512258 PELP1Q8IZL8 1130 aaKnown RBP14.04□□□□□ -0.16
MSH3-202ENST00000512258 PAK3O75914 559 aaPredicted RBP13.99□□□□□ -0.17
MSH3-202ENST00000512258 PLSCR2Q9NRY7 297 aa13.98□□□□□ -0.17
MSH3-202ENST00000512258 NPM1P06748 294 aaKnown RBP eCLIP13.96□□□□□ -0.17
MSH3-202ENST00000512258 EHMT2Q96KQ7 1210 aa13.95□□□□□ -0.18
MSH3-202ENST00000512258 MS4A3Q96HJ5 214 aa13.92□□□□□ -0.18
MSH3-202ENST00000512258 ASTLQ6HA08 431 aaPredicted RBP13.91□□□□□ -0.18
MSH3-202ENST00000512258 POTEJP0CG39 1038 aa13.89□□□□□ -0.19
MSH3-202ENST00000512258 ATMINO43313 823 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms