RNA–Protein interactions for RNA: ENST00000512107.5

MATR3-238, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-238	ENST00000512107	ZNF827	Q17R98	1081 aa		18.94	■□□□□ 0.62
MATR3-238	ENST00000512107	CYP19A1	P11511	503 aa	Predicted RBP	18.93	■□□□□ 0.62
MATR3-238	ENST00000512107		E9PSI1	815 aa		18.92	■□□□□ 0.62
MATR3-238	ENST00000512107	INTS5	Q6P9B9	1019 aa	Known RBP	18.92	■□□□□ 0.62
MATR3-238	ENST00000512107	A1BG	P04217	495 aa		18.91	■□□□□ 0.62
MATR3-238	ENST00000512107	SLC27A3	Q5K4L6	730 aa		18.91	■□□□□ 0.62
MATR3-238	ENST00000512107	VSIG10	Q8N0Z9	540 aa		18.91	■□□□□ 0.62
MATR3-238	ENST00000512107	NECTIN2	Q92692	538 aa		18.91	■□□□□ 0.62
MATR3-238	ENST00000512107	AKT1S1	Q96B36	256 aa		18.91	■□□□□ 0.62
MATR3-238	ENST00000512107	NBPF26	B4DH59	902 aa		18.9	■□□□□ 0.62
MATR3-238	ENST00000512107	TCERG1	O14776	1098 aa	Known RBP	18.9	■□□□□ 0.62
MATR3-238	ENST00000512107	SNRPA1	P09661	255 aa	Known RBP	18.9	■□□□□ 0.62
MATR3-238	ENST00000512107	NBPF14	Q5TI25	921 aa		18.9	■□□□□ 0.62
MATR3-238	ENST00000512107	NBPF10	Q6P3W6	841 aa	Known RBP	18.9	■□□□□ 0.62
MATR3-238	ENST00000512107	NBPF15	Q8N660	670 aa		18.9	■□□□□ 0.62
MATR3-238	ENST00000512107	UBR3	Q6ZT12	1888 aa		18.9	■□□□□ 0.62
MATR3-238	ENST00000512107	VAMP4	O75379	141 aa		18.89	■□□□□ 0.61
MATR3-238	ENST00000512107	ANXA1	P04083	346 aa		18.89	■□□□□ 0.61
MATR3-238	ENST00000512107	PROSER3	Q2NL68	480 aa		18.89	■□□□□ 0.61
MATR3-238	ENST00000512107	ZBTB1	Q9Y2K1	713 aa		18.89	■□□□□ 0.61
MATR3-238	ENST00000512107	CRKL	P46109	303 aa	Known RBP	18.88	■□□□□ 0.61
MATR3-238	ENST00000512107	PDIA6	Q15084	440 aa		18.88	■□□□□ 0.61
MATR3-238	ENST00000512107	MYH16	Q9H6N6	1097 aa		18.88	■□□□□ 0.61
MATR3-238	ENST00000512107	EIF2S2	P20042	333 aa	Known RBP	18.87	■□□□□ 0.61
MATR3-238	ENST00000512107	LRP10	Q7Z4F1	713 aa		18.87	■□□□□ 0.61
MATR3-238	ENST00000512107	PDGFD	Q9GZP0	370 aa	Predicted RBP	18.87	■□□□□ 0.61
MATR3-238	ENST00000512107	CNTNAP4	Q9C0A0	1308 aa		18.86	■□□□□ 0.61
MATR3-238	ENST00000512107	TWISTNB	Q3B726	338 aa	Predicted RBP	18.86	■□□□□ 0.61
MATR3-238	ENST00000512107	CANX	P27824	592 aa	Known RBP	18.84	■□□□□ 0.61
MATR3-238	ENST00000512107	CCDC87	Q9NVE4	849 aa		18.84	■□□□□ 0.61
MATR3-238	ENST00000512107	RC3H1	Q5TC82	1133 aa	Known RBP	18.83	■□□□□ 0.6
MATR3-238	ENST00000512107	CHPF2	Q9P2E5	772 aa		18.83	■□□□□ 0.6
MATR3-238	ENST00000512107	C4A	P0C0L4	1744 aa		18.83	■□□□□ 0.6
MATR3-238	ENST00000512107	SOS1	Q07889	1333 aa	Predicted RBP	18.82	■□□□□ 0.6
MATR3-238	ENST00000512107	GNPAT	O15228	680 aa		18.82	■□□□□ 0.6
MATR3-238	ENST00000512107	SLC15A2	Q16348	729 aa		18.82	■□□□□ 0.6
MATR3-238	ENST00000512107	HDGFL1	Q5TGJ6	251 aa		18.82	■□□□□ 0.6
MATR3-238	ENST00000512107	G2E3	Q7L622	706 aa		18.82	■□□□□ 0.6
MATR3-238	ENST00000512107	PNPLA7	Q6ZV29	1317 aa		18.81	■□□□□ 0.6
MATR3-238	ENST00000512107	QSER1	Q2KHR3	1735 aa		18.81	■□□□□ 0.6
MATR3-238	ENST00000512107	HOXB7	P09629	217 aa		18.81	■□□□□ 0.6
MATR3-238	ENST00000512107	TEX13A	Q9BXU3	409 aa	Predicted RBP	18.81	■□□□□ 0.6
MATR3-238	ENST00000512107	RPS6KA4	O75676	772 aa		18.8	■□□□□ 0.6
MATR3-238	ENST00000512107	STARD3NL	O95772	234 aa		18.8	■□□□□ 0.6
MATR3-238	ENST00000512107	MYL6B	P14649	208 aa		18.8	■□□□□ 0.6
MATR3-238	ENST00000512107	EIF5	P55010	431 aa	Known RBP	18.8	■□□□□ 0.6
MATR3-238	ENST00000512107	COL23A1	Q86Y22	540 aa	Predicted RBP	18.8	■□□□□ 0.6
MATR3-238	ENST00000512107	CASZ1	Q86V15	1759 aa		18.79	■□□□□ 0.6
MATR3-238	ENST00000512107	PSD	A5PKW4	1024 aa	Predicted RBP	18.79	■□□□□ 0.6
MATR3-238	ENST00000512107	PHF14	O94880	888 aa		18.79	■□□□□ 0.6
MATR3-238	ENST00000512107	AK7	Q96M32	723 aa		18.79	■□□□□ 0.6
MATR3-238	ENST00000512107	PHAX	Q9H814	394 aa	Known RBP	18.79	■□□□□ 0.6
MATR3-238	ENST00000512107	R3HDM1	Q15032	1099 aa	Known RBP	18.78	■□□□□ 0.6
MATR3-238	ENST00000512107	TTLL7	Q6ZT98	887 aa		18.78	■□□□□ 0.6
MATR3-238	ENST00000512107	SSH1	Q8WYL5	1049 aa		18.78	■□□□□ 0.6
MATR3-238	ENST00000512107	ARHGEF1	Q92888	912 aa	Known RBP	18.78	■□□□□ 0.6
MATR3-238	ENST00000512107	BCL2L13	Q9BXK5	485 aa		18.78	■□□□□ 0.6
MATR3-238	ENST00000512107	STK32B	Q9NY57	414 aa		18.78	■□□□□ 0.6
MATR3-238	ENST00000512107	SRP68	Q9UHB9	627 aa	Known RBP	18.78	■□□□□ 0.6
MATR3-238	ENST00000512107	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.77	■□□□□ 0.6
MATR3-238	ENST00000512107	DDX21	Q9NR30	783 aa	Known RBP eCLIP	18.77	■□□□□ 0.6
MATR3-238	ENST00000512107	MRPL50	Q8N5N7	158 aa	Known RBP	18.76	■□□□□ 0.59
MATR3-238	ENST00000512107	BCL2L12	Q9HB09	334 aa		18.76	■□□□□ 0.59
MATR3-238	ENST00000512107	TFCP2L1	Q9NZI6	479 aa		18.76	■□□□□ 0.59
MATR3-238	ENST00000512107	COL15A1	P39059	1388 aa		18.76	■□□□□ 0.59
MATR3-238	ENST00000512107	IL6ST	P40189	918 aa	Predicted RBP	18.75	■□□□□ 0.59
MATR3-238	ENST00000512107	RARS	P54136	660 aa	Known RBP	18.75	■□□□□ 0.59
MATR3-238	ENST00000512107	XAGE3	Q8WTP9	111 aa		18.75	■□□□□ 0.59
MATR3-238	ENST00000512107	TBC1D2B	Q9UPU7	963 aa		18.75	■□□□□ 0.59
MATR3-238	ENST00000512107	RTCB	Q9Y3I0	505 aa	Known RBP	18.75	■□□□□ 0.59
MATR3-238	ENST00000512107	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.75	■□□□□ 0.59
MATR3-238	ENST00000512107	BCOR	Q6W2J9	1755 aa		18.75	■□□□□ 0.59
MATR3-238	ENST00000512107	ERBB4	Q15303	1308 aa		18.74	■□□□□ 0.59
MATR3-238	ENST00000512107	BCAR3	O75815	825 aa		18.74	■□□□□ 0.59
MATR3-238	ENST00000512107	CCDC30	Q5VVM6	783 aa		18.74	■□□□□ 0.59
MATR3-238	ENST00000512107	COPS6	Q7L5N1	327 aa		18.74	■□□□□ 0.59
MATR3-238	ENST00000512107	SLC4A2	P04920	1241 aa		18.73	■□□□□ 0.59
MATR3-238	ENST00000512107	DBF4	Q9UBU7	674 aa	Predicted RBP	18.73	■□□□□ 0.59
MATR3-238	ENST00000512107	TNN	Q9UQP3	1299 aa		18.73	■□□□□ 0.59
MATR3-238	ENST00000512107	SCN7A	Q01118	1682 aa		18.73	■□□□□ 0.59
MATR3-238	ENST00000512107	CAMTA2	O94983	1202 aa		18.72	■□□□□ 0.59
MATR3-238	ENST00000512107	SSFA2	P28290	1259 aa		18.72	■□□□□ 0.59
MATR3-238	ENST00000512107	AIMP1	Q12904	312 aa	Known RBP	18.72	■□□□□ 0.59
MATR3-238	ENST00000512107	HLF	Q16534	295 aa		18.72	■□□□□ 0.59
MATR3-238	ENST00000512107	TRAPPC3L	Q5T215	181 aa		18.72	■□□□□ 0.59
MATR3-238	ENST00000512107	USPL1	Q5W0Q7	1092 aa		18.71	■□□□□ 0.59
MATR3-238	ENST00000512107	NUP98	P52948	1817 aa		18.7	■□□□□ 0.58
MATR3-238	ENST00000512107	CACNA1F	O60840	1977 aa		18.7	■□□□□ 0.58
MATR3-238	ENST00000512107	DZIP3	Q86Y13	1208 aa	Known RBP	18.7	■□□□□ 0.58
MATR3-238	ENST00000512107	ARFGEF2	Q9Y6D5	1785 aa		18.7	■□□□□ 0.58
MATR3-238	ENST00000512107	USP42	Q9H9J4	1324 aa	Known RBP	18.7	■□□□□ 0.58
MATR3-238	ENST00000512107	ADCY9	O60503	1353 aa		18.69	■□□□□ 0.58
MATR3-238	ENST00000512107	GYS1	P13807	737 aa		18.69	■□□□□ 0.58
MATR3-238	ENST00000512107	ZBTB3	Q9H5J0	574 aa		18.69	■□□□□ 0.58
MATR3-238	ENST00000512107	HYPK	Q9NX55	129 aa		18.69	■□□□□ 0.58
MATR3-238	ENST00000512107	NARF	Q9UHQ1	456 aa		18.69	■□□□□ 0.58
MATR3-238	ENST00000512107	COL24A1	Q17RW2	1714 aa		18.69	■□□□□ 0.58
MATR3-238	ENST00000512107	CT47B1	P0C2W7	299 aa	Predicted RBP	18.68	■□□□□ 0.58
MATR3-238	ENST00000512107	FKBP8	Q14318	412 aa		18.68	■□□□□ 0.58
MATR3-238	ENST00000512107	ALDH1L2	Q3SY69	923 aa		18.68	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms