RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 BABAM1Q9NWV8 329 aa14.87□□□□□ -0.03
LIMCH1-210ENST00000509454 TUBGCP6Q96RT7 1819 aa14.87□□□□□ -0.03
LIMCH1-210ENST00000509454 PRAMEF22A3QJZ6 481 aa14.87□□□□□ -0.03
LIMCH1-210ENST00000509454 EIF4A1P60842 406 aaKnown RBP14.87□□□□□ -0.03
LIMCH1-210ENST00000509454 GNAI1P63096 354 aa14.87□□□□□ -0.03
LIMCH1-210ENST00000509454 TRAPPC3LQ5T215 181 aa14.87□□□□□ -0.03
LIMCH1-210ENST00000509454 NPM2Q86SE8 214 aaKnown RBP14.87□□□□□ -0.03
LIMCH1-210ENST00000509454 COL23A1Q86Y22 540 aaPredicted RBP14.87□□□□□ -0.03
LIMCH1-210ENST00000509454 CFAP44Q96MT7 982 aa14.87□□□□□ -0.03
LIMCH1-210ENST00000509454 CHL1O00533 1208 aa14.86□□□□□ -0.03
LIMCH1-210ENST00000509454 SSFA2P28290 1259 aa14.86□□□□□ -0.03
LIMCH1-210ENST00000509454 CCDC27Q2M243 656 aa14.86□□□□□ -0.03
LIMCH1-210ENST00000509454 ARXQ96QS3 562 aa14.86□□□□□ -0.03
LIMCH1-210ENST00000509454 IFT57Q9NWB7 429 aa14.86□□□□□ -0.03
LIMCH1-210ENST00000509454 ATF5Q9Y2D1 282 aaPredicted RBP14.86□□□□□ -0.03
LIMCH1-210ENST00000509454 RPS6KA4O75676 772 aa14.85□□□□□ -0.03
LIMCH1-210ENST00000509454 INTS5Q6P9B9 1019 aaKnown RBP14.85□□□□□ -0.03
LIMCH1-210ENST00000509454 AMIGO3Q86WK7 504 aa14.85□□□□□ -0.03
LIMCH1-210ENST00000509454 MBIPQ9NS73 344 aa14.85□□□□□ -0.03
LIMCH1-210ENST00000509454 ZBTB1Q9Y2K1 713 aa14.85□□□□□ -0.03
LIMCH1-210ENST00000509454 USP16Q9Y5T5 823 aa14.85□□□□□ -0.03
LIMCH1-210ENST00000509454 UBR3Q6ZT12 1888 aa14.84□□□□□ -0.03
LIMCH1-210ENST00000509454 A1BGP04217 495 aa14.84□□□□□ -0.03
LIMCH1-210ENST00000509454 RFC4P35249 363 aa14.84□□□□□ -0.03
LIMCH1-210ENST00000509454 MSL1Q68DK7 614 aa14.84□□□□□ -0.03
LIMCH1-210ENST00000509454 NGEFQ8N5V2 710 aa14.84□□□□□ -0.03
LIMCH1-210ENST00000509454 SPON1Q9HCB6 807 aa14.84□□□□□ -0.03
LIMCH1-210ENST00000509454 CICQ96RK0 1608 aaPredicted RBP14.84□□□□□ -0.03
LIMCH1-210ENST00000509454 MYH14Q7Z406 1995 aaKnown RBP14.84□□□□□ -0.03
LIMCH1-210ENST00000509454 QSER1Q2KHR3 1735 aa14.84□□□□□ -0.03
LIMCH1-210ENST00000509454 CASZ1Q86V15 1759 aa14.83□□□□□ -0.03
LIMCH1-210ENST00000509454 GIGYF1O75420 1035 aaPredicted RBP14.83□□□□□ -0.04
LIMCH1-210ENST00000509454 EIF2S2P20042 333 aaKnown RBP14.83□□□□□ -0.04
LIMCH1-210ENST00000509454 PIP4K2AP48426 406 aaPredicted RBP14.83□□□□□ -0.04
LIMCH1-210ENST00000509454 KRT24Q2M2I5 525 aa14.82□□□□□ -0.04
LIMCH1-210ENST00000509454 NECTIN2Q92692 538 aa14.82□□□□□ -0.04
LIMCH1-210ENST00000509454 TSR2Q969E8 191 aaKnown RBP14.82□□□□□ -0.04
LIMCH1-210ENST00000509454 MTFR1LQ9H019 292 aa14.82□□□□□ -0.04
LIMCH1-210ENST00000509454 ZNF853P0CG23 659 aa14.82□□□□□ -0.04
LIMCH1-210ENST00000509454 WDR63Q8IWG1 891 aa14.82□□□□□ -0.04
LIMCH1-210ENST00000509454 SLC16A10Q8TF71 515 aa14.82□□□□□ -0.04
LIMCH1-210ENST00000509454 ARHGEF1Q92888 912 aaKnown RBP14.82□□□□□ -0.04
LIMCH1-210ENST00000509454 PPP1R1BQ9UD71 204 aaPredicted RBP14.82□□□□□ -0.04
LIMCH1-210ENST00000509454 SOS1Q07889 1333 aaPredicted RBP14.81□□□□□ -0.04
LIMCH1-210ENST00000509454 COL15A1P39059 1388 aa14.81□□□□□ -0.04
LIMCH1-210ENST00000509454 ZPR1O75312 459 aa14.81□□□□□ -0.04
LIMCH1-210ENST00000509454 IL16Q14005 1332 aa14.8□□□□□ -0.04
LIMCH1-210ENST00000509454 A0A087WZG4 1122 aa14.8□□□□□ -0.04
LIMCH1-210ENST00000509454 ELL2O00472 640 aaPredicted RBP14.8□□□□□ -0.04
LIMCH1-210ENST00000509454 POLD1P28340 1107 aa14.8□□□□□ -0.04
LIMCH1-210ENST00000509454 DUSP27Q5VZP5 1158 aa14.8□□□□□ -0.04
LIMCH1-210ENST00000509454 LAMB4A4D0S4 1761 aa14.8□□□□□ -0.04
LIMCH1-210ENST00000509454 MYL6BP14649 208 aa14.79□□□□□ -0.04
LIMCH1-210ENST00000509454 SRP68Q9UHB9 627 aaKnown RBP14.79□□□□□ -0.04
LIMCH1-210ENST00000509454 IL6STP40189 918 aaPredicted RBP14.78□□□□□ -0.04
LIMCH1-210ENST00000509454 HNRNPUQ00839 825 aaKnown RBP eCLIP14.78□□□□□ -0.04
LIMCH1-210ENST00000509454 MYH16Q9H6N6 1097 aa14.78□□□□□ -0.04
LIMCH1-210ENST00000509454 EIF5P55010 431 aaKnown RBP14.77□□□□□ -0.04
LIMCH1-210ENST00000509454 GOLGA2Q08379 1002 aa14.77□□□□□ -0.04
LIMCH1-210ENST00000509454 HDGFL1Q5TGJ6 251 aa14.77□□□□□ -0.04
LIMCH1-210ENST00000509454 USPL1Q5W0Q7 1092 aa14.77□□□□□ -0.04
LIMCH1-210ENST00000509454 KLHL34Q8N239 644 aa14.77□□□□□ -0.04
LIMCH1-210ENST00000509454 TBC1D2BQ9UPU7 963 aa14.77□□□□□ -0.04
LIMCH1-210ENST00000509454 FANCIQ9NVI1 1328 aa14.77□□□□□ -0.04
LIMCH1-210ENST00000509454 NBPF26B4DH59 902 aa14.76□□□□□ -0.05
LIMCH1-210ENST00000509454 NBPF10Q6P3W6 841 aaKnown RBP14.76□□□□□ -0.05
LIMCH1-210ENST00000509454 NBPF15Q8N660 670 aa14.76□□□□□ -0.05
LIMCH1-210ENST00000509454 C8orf58Q8NAV2 365 aa14.76□□□□□ -0.05
LIMCH1-210ENST00000509454 C4AP0C0L4 1744 aa14.76□□□□□ -0.05
LIMCH1-210ENST00000509454 USP42Q9H9J4 1324 aaKnown RBP14.76□□□□□ -0.05
LIMCH1-210ENST00000509454 DZIP3Q86Y13 1208 aaKnown RBP14.76□□□□□ -0.05
LIMCH1-210ENST00000509454 NARFQ9UHQ1 456 aa14.76□□□□□ -0.05
LIMCH1-210ENST00000509454 ANXA1P04083 346 aa14.75□□□□□ -0.05
LIMCH1-210ENST00000509454 HOXB7P09629 217 aa14.75□□□□□ -0.05
LIMCH1-210ENST00000509454 GYS1P13807 737 aa14.75□□□□□ -0.05
LIMCH1-210ENST00000509454 NLGN1Q8N2Q7 840 aa14.75□□□□□ -0.05
LIMCH1-210ENST00000509454 SPINK5Q9NQ38 1064 aaPredicted RBP14.75□□□□□ -0.05
LIMCH1-210ENST00000509454 LRP5O75197 1615 aa14.74□□□□□ -0.05
LIMCH1-210ENST00000509454 DCAF8L1A6NGE4 600 aa14.74□□□□□ -0.05
LIMCH1-210ENST00000509454 KIF6Q6ZMV9 814 aa14.74□□□□□ -0.05
LIMCH1-210ENST00000509454 TSPYL6Q8N831 410 aa14.74□□□□□ -0.05
LIMCH1-210ENST00000509454 CHPF2Q9P2E5 772 aa14.74□□□□□ -0.05
LIMCH1-210ENST00000509454 ERBB4Q15303 1308 aa14.74□□□□□ -0.05
LIMCH1-210ENST00000509454 E9PSI1 815 aa14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 NPM3O75607 178 aaKnown RBP14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 MMP10P09238 476 aa14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 PTGER2P43116 358 aa14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 EXOSC9Q06265 439 aaKnown RBP14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 AIMP1Q12904 312 aaKnown RBP14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 FKBP8Q14318 412 aa14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 TWISTNBQ3B726 338 aaPredicted RBP14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 BICDL1Q6ZP65 573 aa14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 ZNF521Q96K83 1311 aa14.73□□□□□ -0.05
LIMCH1-210ENST00000509454 PROSER3Q2NL68 480 aa14.72□□□□□ -0.05
LIMCH1-210ENST00000509454 CHMP4AQ9BY43 222 aa14.72□□□□□ -0.05
LIMCH1-210ENST00000509454 TCERG1O14776 1098 aaKnown RBP14.71□□□□□ -0.05
LIMCH1-210ENST00000509454 CCDC30Q5VVM6 783 aa14.71□□□□□ -0.05
LIMCH1-210ENST00000509454 DDX21Q9NR30 783 aaKnown RBP eCLIP14.71□□□□□ -0.05
LIMCH1-210ENST00000509454 DBF4Q9UBU7 674 aaPredicted RBP14.71□□□□□ -0.05
LIMCH1-210ENST00000509454 PARP3Q9Y6F1 533 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms