RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 BABAM1Q9NWV8 329 aa23.79■■□□□ 1.4
NPHP4-210ENST00000506941 ZBTB1Q9Y2K1 713 aa23.79■■□□□ 1.4
NPHP4-210ENST00000506941 RTCBQ9Y3I0 505 aaKnown RBP23.79■■□□□ 1.4
NPHP4-210ENST00000506941 MSH5O43196 834 aa23.78■■□□□ 1.4
NPHP4-210ENST00000506941 SNRPA1P09661 255 aaKnown RBP23.78■■□□□ 1.4
NPHP4-210ENST00000506941 CCDC27Q2M243 656 aa23.78■■□□□ 1.4
NPHP4-210ENST00000506941 TEX13AQ9BXU3 409 aaPredicted RBP23.78■■□□□ 1.4
NPHP4-210ENST00000506941 ATF5Q9Y2D1 282 aaPredicted RBP23.78■■□□□ 1.4
NPHP4-210ENST00000506941 USP16Q9Y5T5 823 aa23.78■■□□□ 1.4
NPHP4-210ENST00000506941 STARD3NLO95772 234 aa23.77■■□□□ 1.4
NPHP4-210ENST00000506941 WWC1Q8IX03 1113 aa23.77■■□□□ 1.4
NPHP4-210ENST00000506941 SLC16A10Q8TF71 515 aa23.77■■□□□ 1.4
NPHP4-210ENST00000506941 SPON1Q9HCB6 807 aa23.77■■□□□ 1.4
NPHP4-210ENST00000506941 LAS1LQ9Y4W2 734 aaKnown RBP23.77■■□□□ 1.4
NPHP4-210ENST00000506941 SOS1Q07889 1333 aaPredicted RBP23.77■■□□□ 1.4
NPHP4-210ENST00000506941 BCORQ6W2J9 1755 aa23.76■■□□□ 1.39
NPHP4-210ENST00000506941 ZNF853P0CG23 659 aa23.76■■□□□ 1.39
NPHP4-210ENST00000506941 PTGER2P43116 358 aa23.76■■□□□ 1.39
NPHP4-210ENST00000506941 NCBP3Q53F19 620 aaKnown RBP23.76■■□□□ 1.39
NPHP4-210ENST00000506941 CFAP44Q96MT7 982 aa23.76■■□□□ 1.39
NPHP4-210ENST00000506941 SCN7AQ01118 1682 aa23.76■■□□□ 1.39
NPHP4-210ENST00000506941 GIGYF1O75420 1035 aaPredicted RBP23.75■■□□□ 1.39
NPHP4-210ENST00000506941 ARHGEF1Q92888 912 aaKnown RBP23.75■■□□□ 1.39
NPHP4-210ENST00000506941 SGIP1Q9BQI5 828 aa23.75■■□□□ 1.39
NPHP4-210ENST00000506941 SALL2Q9Y467 1007 aaPredicted RBP23.75■■□□□ 1.39
NPHP4-210ENST00000506941 A1BGP04217 495 aa23.74■■□□□ 1.39
NPHP4-210ENST00000506941 ADRA2BP18089 450 aa23.74■■□□□ 1.39
NPHP4-210ENST00000506941 TRAPPC3LQ5T215 181 aa23.74■■□□□ 1.39
NPHP4-210ENST00000506941 COL15A1P39059 1388 aa23.74■■□□□ 1.39
NPHP4-210ENST00000506941 CANXP27824 592 aaKnown RBP23.73■■□□□ 1.39
NPHP4-210ENST00000506941 MSL1Q68DK7 614 aa23.73■■□□□ 1.39
NPHP4-210ENST00000506941 MBIPQ9NS73 344 aa23.73■■□□□ 1.39
NPHP4-210ENST00000506941 IFT57Q9NWB7 429 aa23.73■■□□□ 1.39
NPHP4-210ENST00000506941 CALD1Q05682 793 aaKnown RBP23.72■■□□□ 1.39
NPHP4-210ENST00000506941 KRT24Q2M2I5 525 aa23.72■■□□□ 1.39
NPHP4-210ENST00000506941 PIP4K2AP48426 406 aaPredicted RBP23.71■■□□□ 1.39
NPHP4-210ENST00000506941 GNAI1P63096 354 aa23.71■■□□□ 1.39
NPHP4-210ENST00000506941 EIF5P55010 431 aaKnown RBP23.7■■□□□ 1.38
NPHP4-210ENST00000506941 RFC4P35249 363 aa23.69■■□□□ 1.38
NPHP4-210ENST00000506941 SRP68Q9UHB9 627 aaKnown RBP23.69■■□□□ 1.38
NPHP4-210ENST00000506941 USP42Q9H9J4 1324 aaKnown RBP23.68■■□□□ 1.38
NPHP4-210ENST00000506941 NBPF26B4DH59 902 aa23.68■■□□□ 1.38
NPHP4-210ENST00000506941 NBPF10Q6P3W6 841 aaKnown RBP23.68■■□□□ 1.38
NPHP4-210ENST00000506941 NBPF15Q8N660 670 aa23.68■■□□□ 1.38
NPHP4-210ENST00000506941 IL16Q14005 1332 aa23.67■■□□□ 1.38
NPHP4-210ENST00000506941 IL6STP40189 918 aaPredicted RBP23.67■■□□□ 1.38
NPHP4-210ENST00000506941 NUP98P52948 1817 aa23.67■■□□□ 1.38
NPHP4-210ENST00000506941 AFDNP55196 1824 aaKnown RBP23.67■■□□□ 1.38
NPHP4-210ENST00000506941 GYS1P13807 737 aa23.66■■□□□ 1.38
NPHP4-210ENST00000506941 NGEFQ8N5V2 710 aa23.66■■□□□ 1.38
NPHP4-210ENST00000506941 TSR2Q969E8 191 aaKnown RBP23.66■■□□□ 1.38
NPHP4-210ENST00000506941 ZNF521Q96K83 1311 aa23.65■■□□□ 1.38
NPHP4-210ENST00000506941 WDR63Q8IWG1 891 aa23.65■■□□□ 1.38
NPHP4-210ENST00000506941 ZNF330Q9Y3S2 320 aaPredicted RBP23.65■■□□□ 1.38
NPHP4-210ENST00000506941 KIF13BQ9NQT8 1826 aa23.63■■□□□ 1.37
NPHP4-210ENST00000506941 NARFQ9UHQ1 456 aa23.63■■□□□ 1.37
NPHP4-210ENST00000506941 EIF2S2P20042 333 aaKnown RBP23.62■■□□□ 1.37
NPHP4-210ENST00000506941 POLD1P28340 1107 aa23.62■■□□□ 1.37
NPHP4-210ENST00000506941 USPL1Q5W0Q7 1092 aa23.62■■□□□ 1.37
NPHP4-210ENST00000506941 BCL2L12Q9HB09 334 aa23.62■■□□□ 1.37
NPHP4-210ENST00000506941 SPINK5Q9NQ38 1064 aaPredicted RBP23.62■■□□□ 1.37
NPHP4-210ENST00000506941 PPP1R1BQ9UD71 204 aaPredicted RBP23.62■■□□□ 1.37
NPHP4-210ENST00000506941 A0A087WZG4 1122 aa23.61■■□□□ 1.37
NPHP4-210ENST00000506941 ZPR1O75312 459 aa23.61■■□□□ 1.37
NPHP4-210ENST00000506941 FKBP8Q14318 412 aa23.61■■□□□ 1.37
NPHP4-210ENST00000506941 DUSP27Q5VZP5 1158 aa23.61■■□□□ 1.37
NPHP4-210ENST00000506941 C8orf58Q8NAV2 365 aa23.61■■□□□ 1.37
NPHP4-210ENST00000506941 NECTIN2Q92692 538 aa23.61■■□□□ 1.37
NPHP4-210ENST00000506941 ARXQ96QS3 562 aa23.61■■□□□ 1.37
NPHP4-210ENST00000506941 TBC1D2BQ9UPU7 963 aa23.61■■□□□ 1.37
NPHP4-210ENST00000506941 NRXN2Q9P2S2 1712 aa23.6■■□□□ 1.37
NPHP4-210ENST00000506941 HOXB7P09629 217 aa23.6■■□□□ 1.37
NPHP4-210ENST00000506941 PDIA6Q15084 440 aa23.6■■□□□ 1.37
NPHP4-210ENST00000506941 CACNA1FO60840 1977 aa23.6■■□□□ 1.37
NPHP4-210ENST00000506941 ERBB4Q15303 1308 aa23.59■■□□□ 1.37
NPHP4-210ENST00000506941 FANCIQ9NVI1 1328 aa23.59■■□□□ 1.37
NPHP4-210ENST00000506941 PROSER3Q2NL68 480 aa23.59■■□□□ 1.37
NPHP4-210ENST00000506941 NLGN1Q8N2Q7 840 aa23.59■■□□□ 1.37
NPHP4-210ENST00000506941 ANKRD36CQ5JPF3 1778 aa23.58■■□□□ 1.37
NPHP4-210ENST00000506941 ELL2O00472 640 aaPredicted RBP23.58■■□□□ 1.37
NPHP4-210ENST00000506941 CAMTA2O94983 1202 aa23.58■■□□□ 1.37
NPHP4-210ENST00000506941 MMP10P09238 476 aa23.58■■□□□ 1.37
NPHP4-210ENST00000506941 MYL6BP14649 208 aa23.58■■□□□ 1.37
NPHP4-210ENST00000506941 LRP10Q7Z4F1 713 aa23.58■■□□□ 1.37
NPHP4-210ENST00000506941 DZIP3Q86Y13 1208 aaKnown RBP23.58■■□□□ 1.37
NPHP4-210ENST00000506941 TSPYL6Q8N831 410 aa23.58■■□□□ 1.37
NPHP4-210ENST00000506941 KIAA1551Q9HCM1 1747 aa23.58■■□□□ 1.37
NPHP4-210ENST00000506941 ANXA1P04083 346 aa23.57■■□□□ 1.36
NPHP4-210ENST00000506941 HDGFL1Q5TGJ6 251 aa23.56■■□□□ 1.36
NPHP4-210ENST00000506941 FHDC1Q9C0D6 1143 aaPredicted RBP23.56■■□□□ 1.36
NPHP4-210ENST00000506941 DDR1Q08345 913 aa23.55■■□□□ 1.36
NPHP4-210ENST00000506941 NPM2Q86SE8 214 aaKnown RBP23.55■■□□□ 1.36
NPHP4-210ENST00000506941 CHPF2Q9P2E5 772 aa23.55■■□□□ 1.36
NPHP4-210ENST00000506941 N4BP2Q86UW6 1770 aaPredicted RBP23.55■■□□□ 1.36
NPHP4-210ENST00000506941 ARFGEF2Q9Y6D5 1785 aa23.55■■□□□ 1.36
NPHP4-210ENST00000506941 TM4SF1P30408 202 aa23.54■■□□□ 1.36
NPHP4-210ENST00000506941 TTLL7Q6ZT98 887 aa23.54■■□□□ 1.36
NPHP4-210ENST00000506941 NFIXQ14938 502 aa23.53■■□□□ 1.36
NPHP4-210ENST00000506941 DDX21Q9NR30 783 aaKnown RBP eCLIP23.53■■□□□ 1.36
NPHP4-210ENST00000506941 ANKRD31Q8N7Z5 1873 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms