RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 RAD21O60216 631 aa7.95□□□□□ -1.14
CSMD3-208ENST00000497026 USP4Q13107 963 aa7.95□□□□□ -1.14
CSMD3-208ENST00000497026 NBPF10Q6P3W6 841 aaKnown RBP7.95□□□□□ -1.14
CSMD3-208ENST00000497026 NBPF15Q8N660 670 aa7.95□□□□□ -1.14
CSMD3-208ENST00000497026 PLPP7Q8NBV4 271 aa7.95□□□□□ -1.14
CSMD3-208ENST00000497026 ESYT1Q9BSJ8 1104 aa7.95□□□□□ -1.14
CSMD3-208ENST00000497026 ETNK1Q9HBU6 452 aa7.94□□□□□ -1.14
CSMD3-208ENST00000497026 GPR25O00155 361 aa7.93□□□□□ -1.14
CSMD3-208ENST00000497026 FLIIQ13045 1269 aa7.93□□□□□ -1.14
CSMD3-208ENST00000497026 TMEM132AQ24JP5 1023 aa7.93□□□□□ -1.14
CSMD3-208ENST00000497026 KANK3Q6NY19 840 aa7.93□□□□□ -1.14
CSMD3-208ENST00000497026 XAGE2Q96GT9 111 aa7.93□□□□□ -1.14
CSMD3-208ENST00000497026 ZSCAN10Q96SZ4 725 aaPredicted RBP7.93□□□□□ -1.14
CSMD3-208ENST00000497026 CHIC2Q9UKJ5 165 aa7.93□□□□□ -1.14
CSMD3-208ENST00000497026 EFCAB5A4FU69 1503 aa7.92□□□□□ -1.14
CSMD3-208ENST00000497026 WASLO00401 505 aaPredicted RBP7.92□□□□□ -1.14
CSMD3-208ENST00000497026 SKIP12755 728 aa7.92□□□□□ -1.14
CSMD3-208ENST00000497026 DBN1Q16643 649 aa7.92□□□□□ -1.14
CSMD3-208ENST00000497026 TAS1R3Q7RTX0 852 aa7.92□□□□□ -1.14
CSMD3-208ENST00000497026 ALG2Q9H553 416 aa7.92□□□□□ -1.14
CSMD3-208ENST00000497026 TIMMDC1Q9NPL8 285 aa7.92□□□□□ -1.14
CSMD3-208ENST00000497026 ASXL2Q76L83 1435 aa7.92□□□□□ -1.14
CSMD3-208ENST00000497026 RAPGEF6Q8TEU7 1601 aa7.91□□□□□ -1.14
CSMD3-208ENST00000497026 SPATA31C2B4DYI2 1134 aa7.91□□□□□ -1.14
CSMD3-208ENST00000497026 SOX11P35716 441 aa7.91□□□□□ -1.14
CSMD3-208ENST00000497026 FHOD3Q2V2M9 1422 aa7.91□□□□□ -1.14
CSMD3-208ENST00000497026 TMEM214Q6NUQ4 689 aaKnown RBP7.91□□□□□ -1.14
CSMD3-208ENST00000497026 WWC1Q8IX03 1113 aa7.91□□□□□ -1.14
CSMD3-208ENST00000497026 CLUAP1Q96AJ1 413 aa7.91□□□□□ -1.14
CSMD3-208ENST00000497026 ZNF837Q96EG3 531 aaPredicted RBP7.91□□□□□ -1.14
CSMD3-208ENST00000497026 FHDC1Q9C0D6 1143 aaPredicted RBP7.91□□□□□ -1.14
CSMD3-208ENST00000497026 GPAMQ9HCL2 828 aa7.91□□□□□ -1.14
CSMD3-208ENST00000497026 DYRK1BQ9Y463 629 aa7.91□□□□□ -1.14
CSMD3-208ENST00000497026 HRH3Q9Y5N1 445 aa7.91□□□□□ -1.14
CSMD3-208ENST00000497026 PPRC1Q5VV67 1664 aaKnown RBP7.91□□□□□ -1.14
CSMD3-208ENST00000497026 GLI2P10070 1586 aa7.9□□□□□ -1.14
CSMD3-208ENST00000497026 SERTAD1Q9UHV2 236 aa7.9□□□□□ -1.14
CSMD3-208ENST00000497026 TSPOAP1O95153 1857 aa7.9□□□□□ -1.15
CSMD3-208ENST00000497026 SCNN1DP51172 638 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 GDF10P55107 478 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 GAS6Q14393 721 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 TLR1Q15399 786 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 MAP7D1Q3KQU3 841 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 ESCO1Q5FWF5 840 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 TRIM22Q8IYM9 498 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 DEPDC4Q8N2C3 294 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 ADAMTS19Q8TE59 1207 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 WHAMMQ8TF30 809 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 GTPBP3Q969Y2 492 aaKnown RBP7.89□□□□□ -1.15
CSMD3-208ENST00000497026 SIRT1Q96EB6 747 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 ARHGAP35Q9NRY4 1499 aa7.89□□□□□ -1.15
CSMD3-208ENST00000497026 EPRSP07814 1512 aaKnown RBP7.88□□□□□ -1.15
CSMD3-208ENST00000497026 MAP3K4Q9Y6R4 1608 aa7.88□□□□□ -1.15
CSMD3-208ENST00000497026 GTF2E1P29083 439 aaPredicted RBP7.88□□□□□ -1.15
CSMD3-208ENST00000497026 RANGAP1P46060 587 aaPredicted RBP7.88□□□□□ -1.15
CSMD3-208ENST00000497026 FAM69CQ0P6D2 419 aa7.88□□□□□ -1.15
CSMD3-208ENST00000497026 C4orf17Q53FE4 359 aa7.88□□□□□ -1.15
CSMD3-208ENST00000497026 NUP153P49790 1475 aaKnown RBP7.88□□□□□ -1.15
CSMD3-208ENST00000497026 WDR7Q9Y4E6 1490 aa7.88□□□□□ -1.15
CSMD3-208ENST00000497026 GNASQ5JWF2 1037 aa7.87□□□□□ -1.15
CSMD3-208ENST00000497026 HDGFL1Q5TGJ6 251 aa7.87□□□□□ -1.15
CSMD3-208ENST00000497026 ATP10BO94823 1461 aa7.87□□□□□ -1.15
CSMD3-208ENST00000497026 F11P03951 625 aa7.86□□□□□ -1.15
CSMD3-208ENST00000497026 INHAP05111 366 aa7.86□□□□□ -1.15
CSMD3-208ENST00000497026 IRS1P35568 1242 aa7.86□□□□□ -1.15
CSMD3-208ENST00000497026 KRTAP4-8Q9BYQ9 185 aa7.86□□□□□ -1.15
CSMD3-208ENST00000497026 ADAMTS2O95450 1211 aa7.86□□□□□ -1.15
CSMD3-208ENST00000497026 MARSP56192 900 aaKnown RBP7.86□□□□□ -1.15
CSMD3-208ENST00000497026 NCOA4Q13772 614 aa7.86□□□□□ -1.15
CSMD3-208ENST00000497026 EML3Q32P44 896 aa7.86□□□□□ -1.15
CSMD3-208ENST00000497026 SCARF2Q96GP6 870 aaPredicted RBP7.86□□□□□ -1.15
CSMD3-208ENST00000497026 NUCKS1Q9H1E3 243 aaKnown RBP7.86□□□□□ -1.15
CSMD3-208ENST00000497026 RUBCNLQ9H714 662 aa7.86□□□□□ -1.15
CSMD3-208ENST00000497026 PCDHGA11Q9Y5H2 935 aa7.86□□□□□ -1.15
CSMD3-208ENST00000497026 TMEM229AB2RXF0 380 aa7.85□□□□□ -1.15
CSMD3-208ENST00000497026 H7C1W4 665 aa7.85□□□□□ -1.15
CSMD3-208ENST00000497026 THBS1P07996 1170 aa7.85□□□□□ -1.15
CSMD3-208ENST00000497026 PLA2G4AP47712 749 aa7.85□□□□□ -1.15
CSMD3-208ENST00000497026 WDR44Q5JSH3 913 aa7.85□□□□□ -1.15
CSMD3-208ENST00000497026 ZNF385CQ66K41 422 aaPredicted RBP7.85□□□□□ -1.15
CSMD3-208ENST00000497026 SVOPQ8N4V2 548 aa7.85□□□□□ -1.15
CSMD3-208ENST00000497026 CFAP43Q8NDM7 1665 aa7.85□□□□□ -1.15
CSMD3-208ENST00000497026 LRRIQ1Q96JM4 1722 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 ARID3CA6NKF2 412 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 USP17L5A8MUK1 530 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 MSX1P28360 303 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 GTF2IP78347 998 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 PSME1Q06323 249 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 FOXR1Q6PIV2 292 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 TBC1D9Q6ZT07 1266 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 PPARGC1BQ86YN6 1023 aaKnown RBP7.84□□□□□ -1.15
CSMD3-208ENST00000497026 RHBDD1Q8TEB9 315 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 NOD1Q9Y239 953 aa7.84□□□□□ -1.15
CSMD3-208ENST00000497026 KDM6BO15054 1643 aa7.83□□□□□ -1.16
CSMD3-208ENST00000497026 ADAM23O75077 832 aa7.83□□□□□ -1.16
CSMD3-208ENST00000497026 SMTNP53814 917 aa7.83□□□□□ -1.16
CSMD3-208ENST00000497026 UCN2Q96RP3 112 aa7.83□□□□□ -1.16
CSMD3-208ENST00000497026 USP3Q9Y6I4 520 aa7.83□□□□□ -1.16
CSMD3-208ENST00000497026 ABCA9Q8IUA7 1624 aa7.83□□□□□ -1.16
CSMD3-208ENST00000497026 CDK13Q14004 1512 aaKnown RBP7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms