RNA–Protein interactions for RNA: ENST00000495522.1

CALD1-222, Transcript of caldesmon 1, human

TSL 5 BASIC

Gene CALD1, Length 2,199 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-222	ENST00000495522	GOLGA6L3	A6NEY3	463 aa		18.78	■□□□□ 0.6
CALD1-222	ENST00000495522	TRIM6-TRIM34	B2RNG4	842 aa		18.78	■□□□□ 0.6
CALD1-222	ENST00000495522	C19orf44	Q9H6X5	657 aa		18.78	■□□□□ 0.6
CALD1-222	ENST00000495522	AXIN2	Q9Y2T1	843 aa		18.78	■□□□□ 0.6
CALD1-222	ENST00000495522	ADCY9	O60503	1353 aa		18.78	■□□□□ 0.6
CALD1-222	ENST00000495522	SURF6	O75683	361 aa	Known RBP	18.77	■□□□□ 0.6
CALD1-222	ENST00000495522	FSD2	A1L4K1	749 aa		18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	SRGAP3	O43295	1099 aa		18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	NBPF7	P0C2Y1	421 aa	Predicted RBP	18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	CHML	P26374	656 aa		18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	RILPL2	Q969X0	211 aa		18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	HEG1	Q9ULI3	1381 aa		18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	GIGYF1	O75420	1035 aa	Predicted RBP	18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	ANXA1	P04083	346 aa		18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	SSFA2	P28290	1259 aa		18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	SKOR2	Q2VWA4	1001 aa	Predicted RBP	18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	CLEC17A	Q6ZS10	378 aa		18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	IL1RAPL2	Q9NP60	686 aa		18.76	■□□□□ 0.59
CALD1-222	ENST00000495522	SIPA1L3	O60292	1781 aa	Predicted RBP	18.75	■□□□□ 0.59
CALD1-222	ENST00000495522	ALS2	Q96Q42	1657 aa		18.75	■□□□□ 0.59
CALD1-222	ENST00000495522	MCC	P23508	829 aa		18.75	■□□□□ 0.59
CALD1-222	ENST00000495522	RHPN1	Q8TCX5	695 aa		18.75	■□□□□ 0.59
CALD1-222	ENST00000495522	KIF1BP	Q96EK5	621 aa		18.75	■□□□□ 0.59
CALD1-222	ENST00000495522	CWC22	Q9HCG8	908 aa	Known RBP	18.75	■□□□□ 0.59
CALD1-222	ENST00000495522	ADAMTS7	Q9UKP4	1686 aa		18.75	■□□□□ 0.59
CALD1-222	ENST00000495522	ERBB3	P21860	1342 aa		18.74	■□□□□ 0.59
CALD1-222	ENST00000495522	NUCB2	P80303	420 aa		18.74	■□□□□ 0.59
CALD1-222	ENST00000495522	RGPD5	Q99666	1765 aa		18.74	■□□□□ 0.59
CALD1-222	ENST00000495522	HSP90AB4P	Q58FF6	505 aa		18.74	■□□□□ 0.59
CALD1-222	ENST00000495522	GOLGA6L22	H0YM25	854 aa		18.73	■□□□□ 0.59
CALD1-222	ENST00000495522	ALDH1L1	O75891	902 aa		18.73	■□□□□ 0.59
CALD1-222	ENST00000495522	NUTM1	Q86Y26	1132 aa		18.73	■□□□□ 0.59
CALD1-222	ENST00000495522	ANAPC15	P60006	121 aa		18.72	■□□□□ 0.59
CALD1-222	ENST00000495522	KSR2	Q6VAB6	950 aa		18.72	■□□□□ 0.59
CALD1-222	ENST00000495522	UNC5CL	Q8IV45	518 aa		18.72	■□□□□ 0.59
CALD1-222	ENST00000495522	ANO2	Q9NQ90	1003 aa		18.72	■□□□□ 0.59
CALD1-222	ENST00000495522	MAP3K2	Q9Y2U5	619 aa		18.72	■□□□□ 0.59
CALD1-222	ENST00000495522	ZC3H6	P61129	1189 aa	Known RBP	18.71	■□□□□ 0.59
CALD1-222	ENST00000495522	MTX1	Q13505	466 aa		18.71	■□□□□ 0.59
CALD1-222	ENST00000495522	HYPK	Q9NX55	129 aa		18.71	■□□□□ 0.59
CALD1-222	ENST00000495522	ISY1	Q9ULR0	285 aa	Known RBP	18.71	■□□□□ 0.59
CALD1-222	ENST00000495522	HDAC5	Q9UQL6	1122 aa		18.71	■□□□□ 0.59
CALD1-222	ENST00000495522	EPB41L2	O43491	1005 aa	Known RBP	18.71	■□□□□ 0.59
CALD1-222	ENST00000495522	PROSER3	Q2NL68	480 aa		18.71	■□□□□ 0.59
CALD1-222	ENST00000495522	STRCP1	A6NGW2	1772 aa		18.7	■□□□□ 0.58
CALD1-222	ENST00000495522	BAG4	O95429	457 aa	Known RBP	18.7	■□□□□ 0.58
CALD1-222	ENST00000495522	CYP2E1	P05181	493 aa	Predicted RBP	18.7	■□□□□ 0.58
CALD1-222	ENST00000495522	ATF3	P18847	181 aa		18.7	■□□□□ 0.58
CALD1-222	ENST00000495522	MCM2	P49736	904 aa		18.7	■□□□□ 0.58
CALD1-222	ENST00000495522	PI4K2B	Q8TCG2	481 aa		18.7	■□□□□ 0.58
CALD1-222	ENST00000495522	RAPGEF4	Q8WZA2	1011 aa		18.7	■□□□□ 0.58
CALD1-222	ENST00000495522	XRCC6	P12956	609 aa	Known RBP eCLIP	18.69	■□□□□ 0.58
CALD1-222	ENST00000495522	NEK4	P51957	841 aa		18.69	■□□□□ 0.58
CALD1-222	ENST00000495522	C9orf78	Q9NZ63	289 aa	Predicted RBP	18.69	■□□□□ 0.58
CALD1-222	ENST00000495522	AK9	Q5TCS8	1911 aa		18.68	■□□□□ 0.58
CALD1-222	ENST00000495522	DCC	P43146	1447 aa		18.68	■□□□□ 0.58
CALD1-222	ENST00000495522	PRAMEF22	A3QJZ6	481 aa		18.68	■□□□□ 0.58
CALD1-222	ENST00000495522	IL17RA	Q96F46	866 aa		18.68	■□□□□ 0.58
CALD1-222	ENST00000495522	ARX	Q96QS3	562 aa		18.68	■□□□□ 0.58
CALD1-222	ENST00000495522	DDX58	O95786	925 aa	Known RBP	18.68	■□□□□ 0.58
CALD1-222	ENST00000495522	MRE11	P49959	708 aa		18.68	■□□□□ 0.58
CALD1-222	ENST00000495522	DDX21	Q9NR30	783 aa	Known RBP eCLIP	18.68	■□□□□ 0.58
CALD1-222	ENST00000495522	NLRP2	Q9NX02	1062 aa		18.68	■□□□□ 0.58
CALD1-222	ENST00000495522	USP42	Q9H9J4	1324 aa	Known RBP	18.67	■□□□□ 0.58
CALD1-222	ENST00000495522	OS9	Q13438	667 aa	Predicted RBP	18.67	■□□□□ 0.58
CALD1-222	ENST00000495522	PALD1	Q9ULE6	856 aa		18.67	■□□□□ 0.58
CALD1-222	ENST00000495522	TMEM94	Q12767	1356 aa		18.67	■□□□□ 0.58
CALD1-222	ENST00000495522	NPHP3	Q7Z494	1330 aa		18.67	■□□□□ 0.58
CALD1-222	ENST00000495522	TAT	P17735	454 aa	Predicted RBP	18.66	■□□□□ 0.58
CALD1-222	ENST00000495522	CNTROB	Q8N137	903 aa		18.66	■□□□□ 0.58
CALD1-222	ENST00000495522	ZGPAT	Q8N5A5	531 aa	Known RBP	18.66	■□□□□ 0.58
CALD1-222	ENST00000495522	ABCC6	O95255	1503 aa		18.66	■□□□□ 0.58
CALD1-222	ENST00000495522	SCN11A	Q9UI33	1791 aa		18.66	■□□□□ 0.58
CALD1-222	ENST00000495522	TTC41P	Q6P2S7	1318 aa		18.66	■□□□□ 0.58
CALD1-222	ENST00000495522	LINS1	Q8NG48	757 aa		18.66	■□□□□ 0.58
CALD1-222	ENST00000495522	SPG7	Q9UQ90	795 aa		18.66	■□□□□ 0.58
CALD1-222	ENST00000495522	ZNF790	Q6PG37	636 aa		18.65	■□□□□ 0.58
CALD1-222	ENST00000495522	TMX3	Q96JJ7	454 aa		18.65	■□□□□ 0.58
CALD1-222	ENST00000495522	SLC52A2	Q9HAB3	445 aa		18.65	■□□□□ 0.58
CALD1-222	ENST00000495522	KDM6A	O15550	1401 aa	Predicted RBP	18.65	■□□□□ 0.58
CALD1-222	ENST00000495522	CWF19L2	Q2TBE0	894 aa	Known RBP	18.65	■□□□□ 0.58
CALD1-222	ENST00000495522	ERC1	Q8IUD2	1116 aa		18.65	■□□□□ 0.58
CALD1-222	ENST00000495522	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	18.65	■□□□□ 0.58	2e-7	■■■□□ 15.9
CALD1-222	ENST00000495522	MAP4K4	O95819	1239 aa	Predicted RBP	18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	PHKG2	P15735	406 aa		18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	PKNOX2	Q96KN3	472 aa		18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	COL18A1	P39060	1754 aa		18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	CRYBG1	Q9Y4K1	1723 aa		18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	PLEKHG2	Q9H7P9	1386 aa		18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	UTY	O14607	1347 aa		18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	GLRX3	O76003	335 aa	Known RBP	18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	PKP1	Q13835	747 aa		18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	PDIA6	Q15084	440 aa		18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	CLASRP	Q8N2M8	674 aa	Known RBP	18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	GRPEL1	Q9HAV7	217 aa		18.64	■□□□□ 0.57
CALD1-222	ENST00000495522	GRM8	O00222	908 aa		18.63	■□□□□ 0.57
CALD1-222	ENST00000495522	SGSM2	O43147	1006 aa		18.63	■□□□□ 0.57
CALD1-222	ENST00000495522	HSPA4	P34932	840 aa		18.63	■□□□□ 0.57
CALD1-222	ENST00000495522	KLHL40	Q2TBA0	621 aa		18.63	■□□□□ 0.57
CALD1-222	ENST00000495522	IL25	Q9H293	177 aa		18.63	■□□□□ 0.57

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms