RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 CCDC87Q9NVE4 849 aa14.13□□□□□ -0.15
VPS13D-210ENST00000489961 RTCBQ9Y3I0 505 aaKnown RBP14.13□□□□□ -0.15
VPS13D-210ENST00000489961 SSFA2P28290 1259 aa14.12□□□□□ -0.15
VPS13D-210ENST00000489961 ZNF521Q96K83 1311 aa14.12□□□□□ -0.15
VPS13D-210ENST00000489961 PRAMEF22A3QJZ6 481 aa14.11□□□□□ -0.15
VPS13D-210ENST00000489961 RPS6KA4O75676 772 aa14.11□□□□□ -0.15
VPS13D-210ENST00000489961 PHF14O94880 888 aa14.11□□□□□ -0.15
VPS13D-210ENST00000489961 HNRNPUQ00839 825 aaKnown RBP eCLIP14.11□□□□□ -0.15
VPS13D-210ENST00000489961 INTS5Q6P9B9 1019 aaKnown RBP14.11□□□□□ -0.15
VPS13D-210ENST00000489961 MYH16Q9H6N6 1097 aa14.11□□□□□ -0.15
VPS13D-210ENST00000489961 USP16Q9Y5T5 823 aa14.11□□□□□ -0.15
VPS13D-210ENST00000489961 CASZ1Q86V15 1759 aa14.11□□□□□ -0.15
VPS13D-210ENST00000489961 PNPLA7Q6ZV29 1317 aa14.11□□□□□ -0.15
VPS13D-210ENST00000489961 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.1□□□□□ -0.15
VPS13D-210ENST00000489961 MSH5O43196 834 aa14.1□□□□□ -0.15
VPS13D-210ENST00000489961 ADRA2BP18089 450 aa14.1□□□□□ -0.15
VPS13D-210ENST00000489961 GOLGA2Q08379 1002 aa14.1□□□□□ -0.15
VPS13D-210ENST00000489961 TSR2Q969E8 191 aaKnown RBP14.1□□□□□ -0.15
VPS13D-210ENST00000489961 ZBTB1Q9Y2K1 713 aa14.1□□□□□ -0.15
VPS13D-210ENST00000489961 HOXB7P09629 217 aa14.09□□□□□ -0.15
VPS13D-210ENST00000489961 CANXP27824 592 aaKnown RBP14.09□□□□□ -0.15
VPS13D-210ENST00000489961 TRAPPC3LQ5T215 181 aa14.09□□□□□ -0.15
VPS13D-210ENST00000489961 NPM2Q86SE8 214 aaKnown RBP14.09□□□□□ -0.15
VPS13D-210ENST00000489961 A1BGP04217 495 aa14.08□□□□□ -0.16
VPS13D-210ENST00000489961 KRT24Q2M2I5 525 aa14.08□□□□□ -0.16
VPS13D-210ENST00000489961 DUSP27Q5VZP5 1158 aa14.08□□□□□ -0.16
VPS13D-210ENST00000489961 COL23A1Q86Y22 540 aaPredicted RBP14.08□□□□□ -0.16
VPS13D-210ENST00000489961 SLC16A10Q8TF71 515 aa14.08□□□□□ -0.16
VPS13D-210ENST00000489961 SOS1Q07889 1333 aaPredicted RBP14.08□□□□□ -0.16
VPS13D-210ENST00000489961 FANCIQ9NVI1 1328 aa14.08□□□□□ -0.16
VPS13D-210ENST00000489961 C4AP0C0L4 1744 aa14.07□□□□□ -0.16
VPS13D-210ENST00000489961 E9PSI1 815 aa14.07□□□□□ -0.16
VPS13D-210ENST00000489961 EIF2S2P20042 333 aaKnown RBP14.07□□□□□ -0.16
VPS13D-210ENST00000489961 RFC4P35249 363 aa14.07□□□□□ -0.16
VPS13D-210ENST00000489961 IL6STP40189 918 aaPredicted RBP14.07□□□□□ -0.16
VPS13D-210ENST00000489961 SMIM5Q71RC9 77 aa14.07□□□□□ -0.16
VPS13D-210ENST00000489961 AMIGO3Q86WK7 504 aa14.07□□□□□ -0.16
VPS13D-210ENST00000489961 CHMP4AQ9BY43 222 aa14.07□□□□□ -0.16
VPS13D-210ENST00000489961 PDGFDQ9GZP0 370 aaPredicted RBP14.07□□□□□ -0.16
VPS13D-210ENST00000489961 ERBB4Q15303 1308 aa14.07□□□□□ -0.16
VPS13D-210ENST00000489961 COL15A1P39059 1388 aa14.07□□□□□ -0.16
VPS13D-210ENST00000489961 A0A087WZG4 1122 aa14.06□□□□□ -0.16
VPS13D-210ENST00000489961 HDGFL1Q5TGJ6 251 aa14.06□□□□□ -0.16
VPS13D-210ENST00000489961 ARHGEF1Q92888 912 aaKnown RBP14.06□□□□□ -0.16
VPS13D-210ENST00000489961 SPINK5Q9NQ38 1064 aaPredicted RBP14.06□□□□□ -0.16
VPS13D-210ENST00000489961 ZNF330Q9Y3S2 320 aaPredicted RBP14.06□□□□□ -0.16
VPS13D-210ENST00000489961 ELL2O00472 640 aaPredicted RBP14.05□□□□□ -0.16
VPS13D-210ENST00000489961 EIF5P55010 431 aaKnown RBP14.05□□□□□ -0.16
VPS13D-210ENST00000489961 C8orf58Q8NAV2 365 aa14.05□□□□□ -0.16
VPS13D-210ENST00000489961 MTFR1LQ9H019 292 aa14.05□□□□□ -0.16
VPS13D-210ENST00000489961 NBPF26B4DH59 902 aa14.04□□□□□ -0.16
VPS13D-210ENST00000489961 ZPR1O75312 459 aa14.04□□□□□ -0.16
VPS13D-210ENST00000489961 ZBTB7AO95365 584 aa14.04□□□□□ -0.16
VPS13D-210ENST00000489961 PIP4K2AP48426 406 aaPredicted RBP14.04□□□□□ -0.16
VPS13D-210ENST00000489961 SLFN5Q08AF3 891 aa14.04□□□□□ -0.16
VPS13D-210ENST00000489961 TWISTNBQ3B726 338 aaPredicted RBP14.04□□□□□ -0.16
VPS13D-210ENST00000489961 NBPF10Q6P3W6 841 aaKnown RBP14.04□□□□□ -0.16
VPS13D-210ENST00000489961 NBPF15Q8N660 670 aa14.04□□□□□ -0.16
VPS13D-210ENST00000489961 NECTIN2Q92692 538 aa14.04□□□□□ -0.16
VPS13D-210ENST00000489961 MYL6BP14649 208 aa14.03□□□□□ -0.16
VPS13D-210ENST00000489961 EXOSC9Q06265 439 aaKnown RBP14.03□□□□□ -0.16
VPS13D-210ENST00000489961 TSPYL6Q8N831 410 aa14.03□□□□□ -0.16
VPS13D-210ENST00000489961 ARXQ96QS3 562 aa14.03□□□□□ -0.16
VPS13D-210ENST00000489961 SPON1Q9HCB6 807 aa14.03□□□□□ -0.16
VPS13D-210ENST00000489961 ZBED9Q6R2W3 1325 aa14.03□□□□□ -0.16
VPS13D-210ENST00000489961 USP42Q9H9J4 1324 aaKnown RBP14.03□□□□□ -0.16
VPS13D-210ENST00000489961 CCDC30Q5VVM6 783 aa14.02□□□□□ -0.17
VPS13D-210ENST00000489961 CDCA7LQ96GN5 454 aa14.02□□□□□ -0.17
VPS13D-210ENST00000489961 DDX21Q9NR30 783 aaKnown RBP eCLIP14.02□□□□□ -0.17
VPS13D-210ENST00000489961 DBF4Q9UBU7 674 aaPredicted RBP14.02□□□□□ -0.17
VPS13D-210ENST00000489961 NARFQ9UHQ1 456 aa14.02□□□□□ -0.17
VPS13D-210ENST00000489961 ATF5Q9Y2D1 282 aaPredicted RBP14.02□□□□□ -0.17
VPS13D-210ENST00000489961 COL24A1Q17RW2 1714 aa14.01□□□□□ -0.17
VPS13D-210ENST00000489961 USPL1Q5W0Q7 1092 aa14.01□□□□□ -0.17
VPS13D-210ENST00000489961 DZIP3Q86Y13 1208 aaKnown RBP14.01□□□□□ -0.17
VPS13D-210ENST00000489961 CHPF2Q9P2E5 772 aa14.01□□□□□ -0.17
VPS13D-210ENST00000489961 SRP68Q9UHB9 627 aaKnown RBP14.01□□□□□ -0.17
VPS13D-210ENST00000489961 TBC1D2BQ9UPU7 963 aa14.01□□□□□ -0.17
VPS13D-210ENST00000489961 BCORQ6W2J9 1755 aa14.01□□□□□ -0.17
VPS13D-210ENST00000489961 SCN7AQ01118 1682 aa14.01□□□□□ -0.17
VPS13D-210ENST00000489961 GYS1P13807 737 aa14□□□□□ -0.17
VPS13D-210ENST00000489961 POLD1P28340 1107 aa14□□□□□ -0.17
VPS13D-210ENST00000489961 PDIA6Q15084 440 aa14□□□□□ -0.17
VPS13D-210ENST00000489961 MSL1Q68DK7 614 aa14□□□□□ -0.17
VPS13D-210ENST00000489961 KIF6Q6ZMV9 814 aa14□□□□□ -0.17
VPS13D-210ENST00000489961 TRMT2AQ8IZ69 625 aaKnown RBP14□□□□□ -0.17
VPS13D-210ENST00000489961 NLGN1Q8N2Q7 840 aa14□□□□□ -0.17
VPS13D-210ENST00000489961 STK31Q9BXU1 1019 aa14□□□□□ -0.17
VPS13D-210ENST00000489961 HYPKQ9NX55 129 aa14□□□□□ -0.17
VPS13D-210ENST00000489961 LRP5O75197 1615 aa14□□□□□ -0.17
VPS13D-210ENST00000489961 VAMP4O75379 141 aa13.99□□□□□ -0.17
VPS13D-210ENST00000489961 ANXA1P04083 346 aa13.99□□□□□ -0.17
VPS13D-210ENST00000489961 PROSER3Q2NL68 480 aa13.99□□□□□ -0.17
VPS13D-210ENST00000489961 CACNA1FO60840 1977 aa13.98□□□□□ -0.17
VPS13D-210ENST00000489961 LRP10Q7Z4F1 713 aa13.98□□□□□ -0.17
VPS13D-210ENST00000489961 ZNF652Q9Y2D9 606 aa13.98□□□□□ -0.17
VPS13D-210ENST00000489961 RGL2O15211 777 aa13.97□□□□□ -0.17
VPS13D-210ENST00000489961 CAMTA2O94983 1202 aa13.97□□□□□ -0.17
VPS13D-210ENST00000489961 AIMP1Q12904 312 aaKnown RBP13.97□□□□□ -0.17
VPS13D-210ENST00000489961 COPS6Q7L5N1 327 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms