RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 SIPA1L3O60292 1781 aaPredicted RBP22.75■■□□□ 1.23
MDC1-206ENST00000489540 SOS1Q07889 1333 aaPredicted RBP22.75■■□□□ 1.23
MDC1-206ENST00000489540 ZBTB1Q9Y2K1 713 aa22.74■■□□□ 1.23
MDC1-206ENST00000489540 UBR3Q6ZT12 1888 aa22.74■■□□□ 1.23
MDC1-206ENST00000489540 COL5A3P25940 1745 aaPredicted RBP22.74■■□□□ 1.23
MDC1-206ENST00000489540 CANXP27824 592 aaKnown RBP22.74■■□□□ 1.23
MDC1-206ENST00000489540 USP16Q9Y5T5 823 aa22.74■■□□□ 1.23
MDC1-206ENST00000489540 TJP1Q07157 1748 aa22.73■■□□□ 1.23
MDC1-206ENST00000489540 FHDC1Q9C0D6 1143 aaPredicted RBP22.73■■□□□ 1.23
MDC1-206ENST00000489540 TSPYL4Q9UJ04 414 aa22.73■■□□□ 1.23
MDC1-206ENST00000489540 UBR2Q8IWV8 1755 aa22.73■■□□□ 1.23
MDC1-206ENST00000489540 GYS1P13807 737 aa22.72■■□□□ 1.23
MDC1-206ENST00000489540 EIF4A1P60842 406 aaKnown RBP22.72■■□□□ 1.23
MDC1-206ENST00000489540 SYT17Q9BSW7 474 aa22.72■■□□□ 1.23
MDC1-206ENST00000489540 A0A087WZG4 1122 aa22.71■■□□□ 1.23
MDC1-206ENST00000489540 ZPR1O75312 459 aa22.71■■□□□ 1.23
MDC1-206ENST00000489540 A1BGP04217 495 aa22.7■■□□□ 1.22
MDC1-206ENST00000489540 IL6STP40189 918 aaPredicted RBP22.7■■□□□ 1.22
MDC1-206ENST00000489540 EIF5P55010 431 aaKnown RBP22.7■■□□□ 1.22
MDC1-206ENST00000489540 NPM2Q86SE8 214 aaKnown RBP22.7■■□□□ 1.22
MDC1-206ENST00000489540 USP42Q9H9J4 1324 aaKnown RBP22.7■■□□□ 1.22
MDC1-206ENST00000489540 PRAMEF22A3QJZ6 481 aa22.69■■□□□ 1.22
MDC1-206ENST00000489540 GIGYF1O75420 1035 aaPredicted RBP22.69■■□□□ 1.22
MDC1-206ENST00000489540 SRP68Q9UHB9 627 aaKnown RBP22.69■■□□□ 1.22
MDC1-206ENST00000489540 MYH14Q7Z406 1995 aaKnown RBP22.69■■□□□ 1.22
MDC1-206ENST00000489540 DLG5Q8TDM6 1919 aa22.69■■□□□ 1.22
MDC1-206ENST00000489540 CHL1O00533 1208 aa22.68■■□□□ 1.22
MDC1-206ENST00000489540 CALD1Q05682 793 aaKnown RBP22.68■■□□□ 1.22
MDC1-206ENST00000489540 NARFQ9UHQ1 456 aa22.68■■□□□ 1.22
MDC1-206ENST00000489540 COL15A1P39059 1388 aa22.67■■□□□ 1.22
MDC1-206ENST00000489540 MMP10P09238 476 aa22.67■■□□□ 1.22
MDC1-206ENST00000489540 KLHL34Q8N239 644 aa22.66■■□□□ 1.22
MDC1-206ENST00000489540 LAS1LQ9Y4W2 734 aaKnown RBP22.66■■□□□ 1.22
MDC1-206ENST00000489540 COL24A1Q17RW2 1714 aa22.66■■□□□ 1.22
MDC1-206ENST00000489540 NCBP3Q53F19 620 aaKnown RBP22.65■■□□□ 1.22
MDC1-206ENST00000489540 USPL1Q5W0Q7 1092 aa22.65■■□□□ 1.22
MDC1-206ENST00000489540 CFAP44Q96MT7 982 aa22.65■■□□□ 1.22
MDC1-206ENST00000489540 CD2APQ9Y5K6 639 aa22.65■■□□□ 1.22
MDC1-206ENST00000489540 DCAF8L1A6NGE4 600 aa22.65■■□□□ 1.22
MDC1-206ENST00000489540 FKBP8Q14318 412 aa22.65■■□□□ 1.22
MDC1-206ENST00000489540 ZNF330Q9Y3S2 320 aaPredicted RBP22.65■■□□□ 1.22
MDC1-206ENST00000489540 CCDC27Q2M243 656 aa22.64■■□□□ 1.21
MDC1-206ENST00000489540 FAM9BQ8IZU0 186 aa22.63■■□□□ 1.21
MDC1-206ENST00000489540 PARP3Q9Y6F1 533 aa22.63■■□□□ 1.21
MDC1-206ENST00000489540 NBPF26B4DH59 902 aa22.61■■□□□ 1.21
MDC1-206ENST00000489540 TM4SF1P30408 202 aa22.61■■□□□ 1.21
MDC1-206ENST00000489540 NBPF10Q6P3W6 841 aaKnown RBP22.61■■□□□ 1.21
MDC1-206ENST00000489540 NBPF15Q8N660 670 aa22.61■■□□□ 1.21
MDC1-206ENST00000489540 IFT57Q9NWB7 429 aa22.61■■□□□ 1.21
MDC1-206ENST00000489540 TBC1D2BQ9UPU7 963 aa22.61■■□□□ 1.21
MDC1-206ENST00000489540 ZNF853P0CG23 659 aa22.6■■□□□ 1.21
MDC1-206ENST00000489540 PIP4K2AP48426 406 aaPredicted RBP22.6■■□□□ 1.21
MDC1-206ENST00000489540 GNAI1P63096 354 aa22.6■■□□□ 1.21
MDC1-206ENST00000489540 DZIP3Q86Y13 1208 aaKnown RBP22.59■■□□□ 1.21
MDC1-206ENST00000489540 BCL2L12Q9HB09 334 aa22.59■■□□□ 1.21
MDC1-206ENST00000489540 WWC1Q8IX03 1113 aa22.58■■□□□ 1.21
MDC1-206ENST00000489540 KDM3BQ7LBC6 1761 aa22.58■■□□□ 1.2
MDC1-206ENST00000489540 ERBB4Q15303 1308 aa22.57■■□□□ 1.2
MDC1-206ENST00000489540 CCER2I3L3R5 266 aa22.57■■□□□ 1.2
MDC1-206ENST00000489540 MBIPQ9NS73 344 aa22.57■■□□□ 1.2
MDC1-206ENST00000489540 CAMTA2O94983 1202 aa22.57■■□□□ 1.2
MDC1-206ENST00000489540 EIF2S2P20042 333 aaKnown RBP22.57■■□□□ 1.2
MDC1-206ENST00000489540 NFIXQ14938 502 aa22.57■■□□□ 1.2
MDC1-206ENST00000489540 NGEFQ8N5V2 710 aa22.57■■□□□ 1.2
MDC1-206ENST00000489540 NLGN2Q8NFZ4 835 aa22.57■■□□□ 1.2
MDC1-206ENST00000489540 POLRMTO00411 1230 aaKnown RBP22.56■■□□□ 1.2
MDC1-206ENST00000489540 DDR1Q08345 913 aa22.56■■□□□ 1.2
MDC1-206ENST00000489540 CLEC4GQ6UXB4 293 aa22.56■■□□□ 1.2
MDC1-206ENST00000489540 RGL2O15211 777 aa22.55■■□□□ 1.2
MDC1-206ENST00000489540 HOXB7P09629 217 aa22.55■■□□□ 1.2
MDC1-206ENST00000489540 DIEXFQ68CQ4 756 aaKnown RBP22.55■■□□□ 1.2
MDC1-206ENST00000489540 SENP3-EIF4A1A0A087X0R7 540 aa22.54■■□□□ 1.2
MDC1-206ENST00000489540 TGFB2P61812 414 aa22.54■■□□□ 1.2
MDC1-206ENST00000489540 ZNF652Q9Y2D9 606 aa22.54■■□□□ 1.2
MDC1-206ENST00000489540 C4AP0C0L4 1744 aa22.54■■□□□ 1.2
MDC1-206ENST00000489540 MYL6BP14649 208 aa22.53■■□□□ 1.2
MDC1-206ENST00000489540 KRT24Q2M2I5 525 aa22.53■■□□□ 1.2
MDC1-206ENST00000489540 IL16Q14005 1332 aa22.52■■□□□ 1.2
MDC1-206ENST00000489540 TBC1D9BQ66K14 1250 aa22.52■■□□□ 1.2
MDC1-206ENST00000489540 BICDL1Q6ZP65 573 aa22.52■■□□□ 1.2
MDC1-206ENST00000489540 SERPINB2P05120 415 aa22.51■■□□□ 1.19
MDC1-206ENST00000489540 PDIA6Q15084 440 aa22.51■■□□□ 1.19
MDC1-206ENST00000489540 GPR162Q16538 588 aa22.51■■□□□ 1.19
MDC1-206ENST00000489540 DUSP27Q5VZP5 1158 aa22.51■■□□□ 1.19
MDC1-206ENST00000489540 WDR63Q8IWG1 891 aa22.51■■□□□ 1.19
MDC1-206ENST00000489540 SETDB2Q96T68 719 aa22.51■■□□□ 1.19
MDC1-206ENST00000489540 SALL2Q9Y467 1007 aaPredicted RBP22.51■■□□□ 1.19
MDC1-206ENST00000489540 ERVV-1B6SEH8 477 aa22.5■■□□□ 1.19
MDC1-206ENST00000489540 KIF6Q6ZMV9 814 aa22.49■■□□□ 1.19
MDC1-206ENST00000489540 CHMP4AQ9BY43 222 aa22.49■■□□□ 1.19
MDC1-206ENST00000489540 HDGFL1Q5TGJ6 251 aa22.48■■□□□ 1.19
MDC1-206ENST00000489540 NECTIN2Q92692 538 aa22.48■■□□□ 1.19
MDC1-206ENST00000489540 DDX21Q9NR30 783 aaKnown RBP eCLIP22.48■■□□□ 1.19
MDC1-206ENST00000489540 C10orf71Q711Q0 1435 aa22.48■■□□□ 1.19
MDC1-206ENST00000489540 MAP3K15Q6ZN16 1313 aa22.47■■□□□ 1.19
MDC1-206ENST00000489540 CARMIL3Q8ND23 1372 aa22.47■■□□□ 1.19
MDC1-206ENST00000489540 TTLL7Q6ZT98 887 aa22.47■■□□□ 1.19
MDC1-206ENST00000489540 LRP10Q7Z4F1 713 aa22.47■■□□□ 1.19
MDC1-206ENST00000489540 PELP1Q8IZL8 1130 aaKnown RBP22.47■■□□□ 1.19
MDC1-206ENST00000489540 HLFQ16534 295 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms