RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 HOXD11P31277 338 aaPredicted RBP20.86■□□□□ 0.93
UPF3A-208ENST00000484246 CCDC87Q9NVE4 849 aa20.86■□□□□ 0.93
UPF3A-208ENST00000484246 KDM3BQ7LBC6 1761 aa20.86■□□□□ 0.93
UPF3A-208ENST00000484246 CCER2I3L3R5 266 aa20.85■□□□□ 0.93
UPF3A-208ENST00000484246 STARD3NLO95772 234 aa20.85■□□□□ 0.93
UPF3A-208ENST00000484246 SOS1Q07889 1333 aaPredicted RBP20.84■□□□□ 0.93
UPF3A-208ENST00000484246 CCDC27Q2M243 656 aa20.84■□□□□ 0.93
UPF3A-208ENST00000484246 SNRPA1P09661 255 aaKnown RBP20.83■□□□□ 0.93
UPF3A-208ENST00000484246 NEUROD2Q15784 382 aa20.83■□□□□ 0.93
UPF3A-208ENST00000484246 PHF14O94880 888 aa20.82■□□□□ 0.92
UPF3A-208ENST00000484246 EIF4A1P60842 406 aaKnown RBP20.82■□□□□ 0.92
UPF3A-208ENST00000484246 TRAPPC3LQ5T215 181 aa20.82■□□□□ 0.92
UPF3A-208ENST00000484246 ZBTB1Q9Y2K1 713 aa20.82■□□□□ 0.92
UPF3A-208ENST00000484246 CHL1O00533 1208 aa20.81■□□□□ 0.92
UPF3A-208ENST00000484246 CALD1Q05682 793 aaKnown RBP20.81■□□□□ 0.92
UPF3A-208ENST00000484246 MIS18AQ9NYP9 233 aa20.81■□□□□ 0.92
UPF3A-208ENST00000484246 TSPYL4Q9UJ04 414 aa20.81■□□□□ 0.92
UPF3A-208ENST00000484246 ATF5Q9Y2D1 282 aaPredicted RBP20.81■□□□□ 0.92
UPF3A-208ENST00000484246 MYH14Q7Z406 1995 aaKnown RBP20.81■□□□□ 0.92
UPF3A-208ENST00000484246 ARHGEF1Q92888 912 aaKnown RBP20.8■□□□□ 0.92
UPF3A-208ENST00000484246 GIGYF1O75420 1035 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-208ENST00000484246 SMIM5Q71RC9 77 aa20.79■□□□□ 0.92
UPF3A-208ENST00000484246 NGEFQ8N5V2 710 aa20.79■□□□□ 0.92
UPF3A-208ENST00000484246 USP42Q9H9J4 1324 aaKnown RBP20.78■□□□□ 0.92
UPF3A-208ENST00000484246 COL15A1P39059 1388 aa20.78■□□□□ 0.92
UPF3A-208ENST00000484246 ZNF853P0CG23 659 aa20.78■□□□□ 0.92
UPF3A-208ENST00000484246 EIF5P55010 431 aaKnown RBP20.78■□□□□ 0.92
UPF3A-208ENST00000484246 DIEXFQ68CQ4 756 aaKnown RBP20.78■□□□□ 0.92
UPF3A-208ENST00000484246 CFAP44Q96MT7 982 aa20.78■□□□□ 0.92
UPF3A-208ENST00000484246 POLD1P28340 1107 aa20.77■□□□□ 0.92
UPF3A-208ENST00000484246 IL6STP40189 918 aaPredicted RBP20.77■□□□□ 0.92
UPF3A-208ENST00000484246 IFT57Q9NWB7 429 aa20.77■□□□□ 0.92
UPF3A-208ENST00000484246 USP16Q9Y5T5 823 aa20.77■□□□□ 0.92
UPF3A-208ENST00000484246 C4AP0C0L4 1744 aa20.76■□□□□ 0.91
UPF3A-208ENST00000484246 PRAMEF22A3QJZ6 481 aa20.76■□□□□ 0.91
UPF3A-208ENST00000484246 RFC4P35249 363 aa20.76■□□□□ 0.91
UPF3A-208ENST00000484246 LAMB4A4D0S4 1761 aa20.76■□□□□ 0.91
UPF3A-208ENST00000484246 ARXQ96QS3 562 aa20.75■□□□□ 0.91
UPF3A-208ENST00000484246 ERBB4Q15303 1308 aa20.75■□□□□ 0.91
UPF3A-208ENST00000484246 GYS1P13807 737 aa20.74■□□□□ 0.91
UPF3A-208ENST00000484246 WWC1Q8IX03 1113 aa20.74■□□□□ 0.91
UPF3A-208ENST00000484246 FAM9BQ8IZU0 186 aa20.74■□□□□ 0.91
UPF3A-208ENST00000484246 NLGN1Q8N2Q7 840 aa20.74■□□□□ 0.91
UPF3A-208ENST00000484246 PPP1R1BQ9UD71 204 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-208ENST00000484246 IL16Q14005 1332 aa20.74■□□□□ 0.91
UPF3A-208ENST00000484246 A0A087WZG4 1122 aa20.73■□□□□ 0.91
UPF3A-208ENST00000484246 A1BGP04217 495 aa20.73■□□□□ 0.91
UPF3A-208ENST00000484246 HOXB7P09629 217 aa20.73■□□□□ 0.91
UPF3A-208ENST00000484246 CANXP27824 592 aaKnown RBP20.73■□□□□ 0.91
UPF3A-208ENST00000484246 GNAI1P63096 354 aa20.73■□□□□ 0.91
UPF3A-208ENST00000484246 MSL1Q68DK7 614 aa20.73■□□□□ 0.91
UPF3A-208ENST00000484246 NARFQ9UHQ1 456 aa20.73■□□□□ 0.91
UPF3A-208ENST00000484246 RGL2O15211 777 aa20.72■□□□□ 0.91
UPF3A-208ENST00000484246 MBIPQ9NS73 344 aa20.71■□□□□ 0.91
UPF3A-208ENST00000484246 NBPF26B4DH59 902 aa20.7■□□□□ 0.9
UPF3A-208ENST00000484246 NBPF10Q6P3W6 841 aaKnown RBP20.7■□□□□ 0.9
UPF3A-208ENST00000484246 NBPF15Q8N660 670 aa20.7■□□□□ 0.9
UPF3A-208ENST00000484246 SRP68Q9UHB9 627 aaKnown RBP20.7■□□□□ 0.9
UPF3A-208ENST00000484246 SCN7AQ01118 1682 aa20.69■□□□□ 0.9
UPF3A-208ENST00000484246 ZPR1O75312 459 aa20.68■□□□□ 0.9
UPF3A-208ENST00000484246 WDR63Q8IWG1 891 aa20.68■□□□□ 0.9
UPF3A-208ENST00000484246 BCL2L12Q9HB09 334 aa20.68■□□□□ 0.9
UPF3A-208ENST00000484246 LAS1LQ9Y4W2 734 aaKnown RBP20.68■□□□□ 0.9
UPF3A-208ENST00000484246 MMP10P09238 476 aa20.67■□□□□ 0.9
UPF3A-208ENST00000484246 FKBP8Q14318 412 aa20.67■□□□□ 0.9
UPF3A-208ENST00000484246 USPL1Q5W0Q7 1092 aa20.67■□□□□ 0.9
UPF3A-208ENST00000484246 FHDC1Q9C0D6 1143 aaPredicted RBP20.67■□□□□ 0.9
UPF3A-208ENST00000484246 CAMTA2O94983 1202 aa20.66■□□□□ 0.9
UPF3A-208ENST00000484246 ZNF521Q96K83 1311 aa20.66■□□□□ 0.9
UPF3A-208ENST00000484246 KRT24Q2M2I5 525 aa20.65■□□□□ 0.9
UPF3A-208ENST00000484246 LRP10Q7Z4F1 713 aa20.65■□□□□ 0.9
UPF3A-208ENST00000484246 NPM2Q86SE8 214 aaKnown RBP20.65■□□□□ 0.9
UPF3A-208ENST00000484246 MIER1Q8N108 512 aa20.65■□□□□ 0.9
UPF3A-208ENST00000484246 SYT17Q9BSW7 474 aa20.65■□□□□ 0.9
UPF3A-208ENST00000484246 CD2APQ9Y5K6 639 aa20.65■□□□□ 0.9
UPF3A-208ENST00000484246 C10orf71Q711Q0 1435 aa20.64■□□□□ 0.89
UPF3A-208ENST00000484246 TM4SF1P30408 202 aa20.64■□□□□ 0.89
UPF3A-208ENST00000484246 DZIP3Q86Y13 1208 aaKnown RBP20.64■□□□□ 0.89
UPF3A-208ENST00000484246 PIP4K2AP48426 406 aaPredicted RBP20.63■□□□□ 0.89
UPF3A-208ENST00000484246 DDR1Q08345 913 aa20.63■□□□□ 0.89
UPF3A-208ENST00000484246 PDIA6Q15084 440 aa20.63■□□□□ 0.89
UPF3A-208ENST00000484246 BCORQ6W2J9 1755 aa20.62■□□□□ 0.89
UPF3A-208ENST00000484246 DUSP27Q5VZP5 1158 aa20.62■□□□□ 0.89
UPF3A-208ENST00000484246 CLEC4GQ6UXB4 293 aa20.62■□□□□ 0.89
UPF3A-208ENST00000484246 TBC1D2BQ9UPU7 963 aa20.62■□□□□ 0.89
UPF3A-208ENST00000484246 ZNF330Q9Y3S2 320 aaPredicted RBP20.62■□□□□ 0.89
UPF3A-208ENST00000484246 POLRMTO00411 1230 aaKnown RBP20.61■□□□□ 0.89
UPF3A-208ENST00000484246 NFIXQ14938 502 aa20.61■□□□□ 0.89
UPF3A-208ENST00000484246 PARP3Q9Y6F1 533 aa20.61■□□□□ 0.89
UPF3A-208ENST00000484246 ERVV-1B6SEH8 477 aa20.6■□□□□ 0.89
UPF3A-208ENST00000484246 HDGFL1Q5TGJ6 251 aa20.6■□□□□ 0.89
UPF3A-208ENST00000484246 CHMP4AQ9BY43 222 aa20.6■□□□□ 0.89
UPF3A-208ENST00000484246 DDX21Q9NR30 783 aaKnown RBP eCLIP20.6■□□□□ 0.89
UPF3A-208ENST00000484246 ZNF652Q9Y2D9 606 aa20.6■□□□□ 0.89
UPF3A-208ENST00000484246 FANCIQ9NVI1 1328 aa20.59■□□□□ 0.89
UPF3A-208ENST00000484246 SENP3-EIF4A1A0A087X0R7 540 aa20.59■□□□□ 0.89
UPF3A-208ENST00000484246 EIF2S2P20042 333 aaKnown RBP20.59■□□□□ 0.89
UPF3A-208ENST00000484246 MAP3K15Q6ZN16 1313 aa20.58■□□□□ 0.89
UPF3A-208ENST00000484246 PROSER3Q2NL68 480 aa20.58■□□□□ 0.89
UPF3A-208ENST00000484246 C8orf58Q8NAV2 365 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms