RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 SNRPA1P09661 255 aaKnown RBP26.6■■□□□ 1.85
SKA3-205ENST00000465471 ADRA2BP18089 450 aa26.6■■□□□ 1.85
SKA3-205ENST00000465471 SMIM5Q71RC9 77 aa26.6■■□□□ 1.85
SKA3-205ENST00000465471 RTCBQ9Y3I0 505 aaKnown RBP26.6■■□□□ 1.85
SKA3-205ENST00000465471 ZBTB7AO95365 584 aa26.59■■□□□ 1.85
SKA3-205ENST00000465471 STARD3NLO95772 234 aa26.59■■□□□ 1.85
SKA3-205ENST00000465471 ZNF853P0CG23 659 aa26.59■■□□□ 1.85
SKA3-205ENST00000465471 CFAP44Q96MT7 982 aa26.59■■□□□ 1.85
SKA3-205ENST00000465471 PRAMEF22A3QJZ6 481 aa26.58■■□□□ 1.85
SKA3-205ENST00000465471 PHF14O94880 888 aa26.58■■□□□ 1.85
SKA3-205ENST00000465471 SPON1Q9HCB6 807 aa26.58■■□□□ 1.85
SKA3-205ENST00000465471 ZBTB1Q9Y2K1 713 aa26.58■■□□□ 1.85
SKA3-205ENST00000465471 SOS1Q07889 1333 aaPredicted RBP26.58■■□□□ 1.85
SKA3-205ENST00000465471 CALD1Q05682 793 aaKnown RBP26.57■■□□□ 1.84
SKA3-205ENST00000465471 WWC1Q8IX03 1113 aa26.57■■□□□ 1.84
SKA3-205ENST00000465471 SGIP1Q9BQI5 828 aa26.57■■□□□ 1.84
SKA3-205ENST00000465471 USP16Q9Y5T5 823 aa26.57■■□□□ 1.84
SKA3-205ENST00000465471 GIGYF1O75420 1035 aaPredicted RBP26.56■■□□□ 1.84
SKA3-205ENST00000465471 PTGER2P43116 358 aa26.56■■□□□ 1.84
SKA3-205ENST00000465471 IFT57Q9NWB7 429 aa26.56■■□□□ 1.84
SKA3-205ENST00000465471 SENP3-EIF4A1A0A087X0R7 540 aa26.55■■□□□ 1.84
SKA3-205ENST00000465471 NGEFQ8N5V2 710 aa26.55■■□□□ 1.84
SKA3-205ENST00000465471 TRAPPC3LQ5T215 181 aa26.54■■□□□ 1.84
SKA3-205ENST00000465471 ARHGEF1Q92888 912 aaKnown RBP26.54■■□□□ 1.84
SKA3-205ENST00000465471 ATF5Q9Y2D1 282 aaPredicted RBP26.53■■□□□ 1.84
SKA3-205ENST00000465471 COL15A1P39059 1388 aa26.53■■□□□ 1.84
SKA3-205ENST00000465471 MSH5O43196 834 aa26.52■■□□□ 1.84
SKA3-205ENST00000465471 GNAI1P63096 354 aa26.52■■□□□ 1.84
SKA3-205ENST00000465471 MBIPQ9NS73 344 aa26.52■■□□□ 1.84
SKA3-205ENST00000465471 IL16Q14005 1332 aa26.51■■□□□ 1.83
SKA3-205ENST00000465471 A1BGP04217 495 aa26.51■■□□□ 1.83
SKA3-205ENST00000465471 EIF5P55010 431 aaKnown RBP26.51■■□□□ 1.83
SKA3-205ENST00000465471 LAS1LQ9Y4W2 734 aaKnown RBP26.51■■□□□ 1.83
SKA3-205ENST00000465471 USP42Q9H9J4 1324 aaKnown RBP26.49■■□□□ 1.83
SKA3-205ENST00000465471 CANXP27824 592 aaKnown RBP26.49■■□□□ 1.83
SKA3-205ENST00000465471 IL6STP40189 918 aaPredicted RBP26.49■■□□□ 1.83
SKA3-205ENST00000465471 SCN7AQ01118 1682 aa26.48■■□□□ 1.83
SKA3-205ENST00000465471 ZNF521Q96K83 1311 aa26.48■■□□□ 1.83
SKA3-205ENST00000465471 RFC4P35249 363 aa26.48■■□□□ 1.83
SKA3-205ENST00000465471 WDR63Q8IWG1 891 aa26.48■■□□□ 1.83
SKA3-205ENST00000465471 NBPF26B4DH59 902 aa26.47■■□□□ 1.83
SKA3-205ENST00000465471 NBPF10Q6P3W6 841 aaKnown RBP26.47■■□□□ 1.83
SKA3-205ENST00000465471 NBPF15Q8N660 670 aa26.47■■□□□ 1.83
SKA3-205ENST00000465471 GYS1P13807 737 aa26.46■■□□□ 1.83
SKA3-205ENST00000465471 KRT24Q2M2I5 525 aa26.46■■□□□ 1.83
SKA3-205ENST00000465471 BCORQ6W2J9 1755 aa26.46■■□□□ 1.83
SKA3-205ENST00000465471 HOXB7P09629 217 aa26.45■■□□□ 1.82
SKA3-205ENST00000465471 MSL1Q68DK7 614 aa26.45■■□□□ 1.82
SKA3-205ENST00000465471 SALL2Q9Y467 1007 aaPredicted RBP26.45■■□□□ 1.82
SKA3-205ENST00000465471 ERBB4Q15303 1308 aa26.44■■□□□ 1.82
SKA3-205ENST00000465471 SRP68Q9UHB9 627 aaKnown RBP26.44■■□□□ 1.82
SKA3-205ENST00000465471 NARFQ9UHQ1 456 aa26.44■■□□□ 1.82
SKA3-205ENST00000465471 A0A087WZG4 1122 aa26.43■■□□□ 1.82
SKA3-205ENST00000465471 PIP4K2AP48426 406 aaPredicted RBP26.43■■□□□ 1.82
SKA3-205ENST00000465471 POLD1P28340 1107 aa26.42■■□□□ 1.82
SKA3-205ENST00000465471 NLGN1Q8N2Q7 840 aa26.41■■□□□ 1.82
SKA3-205ENST00000465471 USPL1Q5W0Q7 1092 aa26.4■■□□□ 1.82
SKA3-205ENST00000465471 TSR2Q969E8 191 aaKnown RBP26.4■■□□□ 1.82
SKA3-205ENST00000465471 BCL2L12Q9HB09 334 aa26.4■■□□□ 1.82
SKA3-205ENST00000465471 ZPR1O75312 459 aa26.39■■□□□ 1.82
SKA3-205ENST00000465471 PDIA6Q15084 440 aa26.39■■□□□ 1.82
SKA3-205ENST00000465471 DUSP27Q5VZP5 1158 aa26.39■■□□□ 1.82
SKA3-205ENST00000465471 LRP10Q7Z4F1 713 aa26.39■■□□□ 1.82
SKA3-205ENST00000465471 ARXQ96QS3 562 aa26.39■■□□□ 1.82
SKA3-205ENST00000465471 FKBP8Q14318 412 aa26.38■■□□□ 1.81
SKA3-205ENST00000465471 SPINK5Q9NQ38 1064 aaPredicted RBP26.38■■□□□ 1.81
SKA3-205ENST00000465471 FANCIQ9NVI1 1328 aa26.38■■□□□ 1.81
SKA3-205ENST00000465471 C8orf58Q8NAV2 365 aa26.37■■□□□ 1.81
SKA3-205ENST00000465471 PPP1R1BQ9UD71 204 aaPredicted RBP26.37■■□□□ 1.81
SKA3-205ENST00000465471 ZNF330Q9Y3S2 320 aaPredicted RBP26.37■■□□□ 1.81
SKA3-205ENST00000465471 CAMTA2O94983 1202 aa26.36■■□□□ 1.81
SKA3-205ENST00000465471 EIF2S2P20042 333 aaKnown RBP26.36■■□□□ 1.81
SKA3-205ENST00000465471 TBC1D2BQ9UPU7 963 aa26.36■■□□□ 1.81
SKA3-205ENST00000465471 MMP10P09238 476 aa26.35■■□□□ 1.81
SKA3-205ENST00000465471 DZIP3Q86Y13 1208 aaKnown RBP26.35■■□□□ 1.81
SKA3-205ENST00000465471 RGL2O15211 777 aa26.34■■□□□ 1.81
SKA3-205ENST00000465471 HDGFL1Q5TGJ6 251 aa26.34■■□□□ 1.81
SKA3-205ENST00000465471 NRXN2Q9P2S2 1712 aa26.34■■□□□ 1.81
SKA3-205ENST00000465471 TM4SF1P30408 202 aa26.33■■□□□ 1.81
SKA3-205ENST00000465471 PROSER3Q2NL68 480 aa26.33■■□□□ 1.81
SKA3-205ENST00000465471 NPM2Q86SE8 214 aaKnown RBP26.33■■□□□ 1.81
SKA3-205ENST00000465471 TSPYL6Q8N831 410 aa26.33■■□□□ 1.81
SKA3-205ENST00000465471 KIF13BQ9NQT8 1826 aa26.32■■□□□ 1.8
SKA3-205ENST00000465471 MYL6BP14649 208 aa26.32■■□□□ 1.8
SKA3-205ENST00000465471 DDX21Q9NR30 783 aaKnown RBP eCLIP26.32■■□□□ 1.8
SKA3-205ENST00000465471 DDR1Q08345 913 aa26.31■■□□□ 1.8
SKA3-205ENST00000465471 NECTIN2Q92692 538 aa26.31■■□□□ 1.8
SKA3-205ENST00000465471 FHDC1Q9C0D6 1143 aaPredicted RBP26.31■■□□□ 1.8
SKA3-205ENST00000465471 MYH16Q9H6N6 1097 aa26.31■■□□□ 1.8
SKA3-205ENST00000465471 ELL2O00472 640 aaPredicted RBP26.3■■□□□ 1.8
SKA3-205ENST00000465471 CHPF2Q9P2E5 772 aa26.3■■□□□ 1.8
SKA3-205ENST00000465471 AFDNP55196 1824 aaKnown RBP26.3■■□□□ 1.8
SKA3-205ENST00000465471 POLRMTO00411 1230 aaKnown RBP26.29■■□□□ 1.8
SKA3-205ENST00000465471 ANXA1P04083 346 aa26.29■■□□□ 1.8
SKA3-205ENST00000465471 NFIXQ14938 502 aa26.29■■□□□ 1.8
SKA3-205ENST00000465471 CLEC4GQ6UXB4 293 aa26.29■■□□□ 1.8
SKA3-205ENST00000465471 NUP98P52948 1817 aa26.29■■□□□ 1.8
SKA3-205ENST00000465471 GOLGA2Q08379 1002 aa26.28■■□□□ 1.8
SKA3-205ENST00000465471 TTLL7Q6ZT98 887 aa26.28■■□□□ 1.8
SKA3-205ENST00000465471 DBF4Q9UBU7 674 aaPredicted RBP26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms