RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 ZNF521Q96K83 1311 aa20.93■□□□□ 0.94
USP39-205ENST00000442708 GIGYF1O75420 1035 aaPredicted RBP20.92■□□□□ 0.94
USP39-205ENST00000442708 SNRPA1P09661 255 aaKnown RBP20.92■□□□□ 0.94
USP39-205ENST00000442708 CALD1Q05682 793 aaKnown RBP20.92■□□□□ 0.94
USP39-205ENST00000442708 COL23A1Q86Y22 540 aaPredicted RBP20.92■□□□□ 0.94
USP39-205ENST00000442708 SPINK5Q9NQ38 1064 aaPredicted RBP20.91■□□□□ 0.94
USP39-205ENST00000442708 CCDC87Q9NVE4 849 aa20.91■□□□□ 0.94
USP39-205ENST00000442708 C4AP0C0L4 1744 aa20.9■□□□□ 0.94
USP39-205ENST00000442708 RPS6KA4O75676 772 aa20.9■□□□□ 0.94
USP39-205ENST00000442708 PHF14O94880 888 aa20.9■□□□□ 0.94
USP39-205ENST00000442708 GNAI1P63096 354 aa20.9■□□□□ 0.94
USP39-205ENST00000442708 WDR63Q8IWG1 891 aa20.9■□□□□ 0.94
USP39-205ENST00000442708 NGEFQ8N5V2 710 aa20.9■□□□□ 0.94
USP39-205ENST00000442708 TEX13AQ9BXU3 409 aaPredicted RBP20.9■□□□□ 0.94
USP39-205ENST00000442708 ZBTB1Q9Y2K1 713 aa20.9■□□□□ 0.94
USP39-205ENST00000442708 IL16Q14005 1332 aa20.89■□□□□ 0.93
USP39-205ENST00000442708 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.89■□□□□ 0.93
USP39-205ENST00000442708 A1BGP04217 495 aa20.89■□□□□ 0.93
USP39-205ENST00000442708 HMGB2P26583 209 aaKnown RBP20.89■□□□□ 0.93
USP39-205ENST00000442708 TSR2Q969E8 191 aaKnown RBP20.89■□□□□ 0.93
USP39-205ENST00000442708 STARD3NLO95772 234 aa20.88■□□□□ 0.93
USP39-205ENST00000442708 PIP4K2AP48426 406 aaPredicted RBP20.88■□□□□ 0.93
USP39-205ENST00000442708 SOS1Q07889 1333 aaPredicted RBP20.87■□□□□ 0.93
USP39-205ENST00000442708 SSFA2P28290 1259 aa20.87■□□□□ 0.93
USP39-205ENST00000442708 RTCBQ9Y3I0 505 aaKnown RBP20.87■□□□□ 0.93
USP39-205ENST00000442708 CANXP27824 592 aaKnown RBP20.86■□□□□ 0.93
USP39-205ENST00000442708 COL24A1Q17RW2 1714 aa20.85■□□□□ 0.93
USP39-205ENST00000442708 NBPF26B4DH59 902 aa20.85■□□□□ 0.93
USP39-205ENST00000442708 ZBTB7AO95365 584 aa20.85■□□□□ 0.93
USP39-205ENST00000442708 NBPF10Q6P3W6 841 aaKnown RBP20.85■□□□□ 0.93
USP39-205ENST00000442708 NBPF15Q8N660 670 aa20.85■□□□□ 0.93
USP39-205ENST00000442708 ARHGEF1Q92888 912 aaKnown RBP20.85■□□□□ 0.93
USP39-205ENST00000442708 MSH5O43196 834 aa20.84■□□□□ 0.93
USP39-205ENST00000442708 C8orf58Q8NAV2 365 aa20.84■□□□□ 0.93
USP39-205ENST00000442708 FLAD1Q8NFF5 587 aa20.84■□□□□ 0.93
USP39-205ENST00000442708 FANCIQ9NVI1 1328 aa20.83■□□□□ 0.93
USP39-205ENST00000442708 EIF5P55010 431 aaKnown RBP20.83■□□□□ 0.93
USP39-205ENST00000442708 TRAPPC3LQ5T215 181 aa20.83■□□□□ 0.93
USP39-205ENST00000442708 TSPYL6Q8N831 410 aa20.83■□□□□ 0.93
USP39-205ENST00000442708 COL15A1P39059 1388 aa20.83■□□□□ 0.92
USP39-205ENST00000442708 ADRA2BP18089 450 aa20.82■□□□□ 0.92
USP39-205ENST00000442708 DUSP27Q5VZP5 1158 aa20.82■□□□□ 0.92
USP39-205ENST00000442708 ATF5Q9Y2D1 282 aaPredicted RBP20.82■□□□□ 0.92
USP39-205ENST00000442708 ELL2O00472 640 aaPredicted RBP20.81■□□□□ 0.92
USP39-205ENST00000442708 EIF2S2P20042 333 aaKnown RBP20.81■□□□□ 0.92
USP39-205ENST00000442708 NECTIN2Q92692 538 aa20.81■□□□□ 0.92
USP39-205ENST00000442708 SRP68Q9UHB9 627 aaKnown RBP20.81■□□□□ 0.92
USP39-205ENST00000442708 PDIA6Q15084 440 aa20.8■□□□□ 0.92
USP39-205ENST00000442708 MSL1Q68DK7 614 aa20.8■□□□□ 0.92
USP39-205ENST00000442708 SLC16A10Q8TF71 515 aa20.8■□□□□ 0.92
USP39-205ENST00000442708 CDCA7LQ96GN5 454 aa20.8■□□□□ 0.92
USP39-205ENST00000442708 IL6STP40189 918 aaPredicted RBP20.79■□□□□ 0.92
USP39-205ENST00000442708 HNRNPUQ00839 825 aaKnown RBP eCLIP20.79■□□□□ 0.92
USP39-205ENST00000442708 PROSER3Q2NL68 480 aa20.79■□□□□ 0.92
USP39-205ENST00000442708 MTFR1LQ9H019 292 aa20.79■□□□□ 0.92
USP39-205ENST00000442708 ZNF330Q9Y3S2 320 aaPredicted RBP20.79■□□□□ 0.92
USP39-205ENST00000442708 USP42Q9H9J4 1324 aaKnown RBP20.78■□□□□ 0.92
USP39-205ENST00000442708 HOXB7P09629 217 aa20.78■□□□□ 0.92
USP39-205ENST00000442708 RFC4P35249 363 aa20.78■□□□□ 0.92
USP39-205ENST00000442708 PTGER2P43116 358 aa20.78■□□□□ 0.92
USP39-205ENST00000442708 GOLGA2Q08379 1002 aa20.78■□□□□ 0.92
USP39-205ENST00000442708 LRP10Q7Z4F1 713 aa20.78■□□□□ 0.92
USP39-205ENST00000442708 SGIP1Q9BQI5 828 aa20.78■□□□□ 0.92
USP39-205ENST00000442708 BCORQ6W2J9 1755 aa20.77■□□□□ 0.92
USP39-205ENST00000442708 SCN7AQ01118 1682 aa20.77■□□□□ 0.92
USP39-205ENST00000442708 ANXA1P04083 346 aa20.77■□□□□ 0.92
USP39-205ENST00000442708 GYS1P13807 737 aa20.77■□□□□ 0.92
USP39-205ENST00000442708 EXOSC9Q06265 439 aaKnown RBP20.77■□□□□ 0.92
USP39-205ENST00000442708 SLFN5Q08AF3 891 aa20.77■□□□□ 0.92
USP39-205ENST00000442708 MYL6BP14649 208 aa20.76■□□□□ 0.91
USP39-205ENST00000442708 HDGFL1Q5TGJ6 251 aa20.76■□□□□ 0.91
USP39-205ENST00000442708 USPL1Q5W0Q7 1092 aa20.76■□□□□ 0.91
USP39-205ENST00000442708 MYH16Q9H6N6 1097 aa20.76■□□□□ 0.91
USP39-205ENST00000442708 SPON1Q9HCB6 807 aa20.76■□□□□ 0.91
USP39-205ENST00000442708 TBC1D2BQ9UPU7 963 aa20.76■□□□□ 0.91
USP39-205ENST00000442708 BCL2L12Q9HB09 334 aa20.75■□□□□ 0.91
USP39-205ENST00000442708 CHPF2Q9P2E5 772 aa20.75■□□□□ 0.91
USP39-205ENST00000442708 NARFQ9UHQ1 456 aa20.75■□□□□ 0.91
USP39-205ENST00000442708 ERBB4Q15303 1308 aa20.75■□□□□ 0.91
USP39-205ENST00000442708 TWISTNBQ3B726 338 aaPredicted RBP20.74■□□□□ 0.91
USP39-205ENST00000442708 TRMT2AQ8IZ69 625 aaKnown RBP20.74■□□□□ 0.91
USP39-205ENST00000442708 A0A087WZG4 1122 aa20.73■□□□□ 0.91
USP39-205ENST00000442708 E9PSI1 815 aa20.73■□□□□ 0.91
USP39-205ENST00000442708 CAMTA2O94983 1202 aa20.73■□□□□ 0.91
USP39-205ENST00000442708 FKBP8Q14318 412 aa20.73■□□□□ 0.91
USP39-205ENST00000442708 DZIP3Q86Y13 1208 aaKnown RBP20.73■□□□□ 0.91
USP39-205ENST00000442708 ZPR1O75312 459 aa20.72■□□□□ 0.91
USP39-205ENST00000442708 TTLL7Q6ZT98 887 aa20.72■□□□□ 0.91
USP39-205ENST00000442708 DDX21Q9NR30 783 aaKnown RBP eCLIP20.72■□□□□ 0.91
USP39-205ENST00000442708 TCERG1O14776 1098 aaKnown RBP20.71■□□□□ 0.91
USP39-205ENST00000442708 VAMP4O75379 141 aa20.71■□□□□ 0.91
USP39-205ENST00000442708 NUP98P52948 1817 aa20.7■□□□□ 0.9
USP39-205ENST00000442708 ARXQ96QS3 562 aa20.7■□□□□ 0.9
USP39-205ENST00000442708 NLGN1Q8N2Q7 840 aa20.69■□□□□ 0.9
USP39-205ENST00000442708 DBF4Q9UBU7 674 aaPredicted RBP20.69■□□□□ 0.9
USP39-205ENST00000442708 MMP10P09238 476 aa20.68■□□□□ 0.9
USP39-205ENST00000442708 HLFQ16534 295 aa20.68■□□□□ 0.9
USP39-205ENST00000442708 COPS6Q7L5N1 327 aa20.68■□□□□ 0.9
USP39-205ENST00000442708 XAGE3Q8WTP9 111 aa20.68■□□□□ 0.9
USP39-205ENST00000442708 ZBED9Q6R2W3 1325 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms