RNA–Protein interactions for RNA: ENST00000433541.1

TREX1-201, Transcript of three prime repair exonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene TREX1, Length 1,105 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1-201ENST00000433541 COL23A1Q86Y22 540 aaPredicted RBP20.21■□□□□ 0.83
TREX1-201ENST00000433541 SPON1Q9HCB6 807 aa20.21■□□□□ 0.83
TREX1-201ENST00000433541 ATF5Q9Y2D1 282 aaPredicted RBP20.21■□□□□ 0.83
TREX1-201ENST00000433541 RPS6KA4O75676 772 aa20.2■□□□□ 0.82
TREX1-201ENST00000433541 GNAI1P63096 354 aa20.2■□□□□ 0.82
TREX1-201ENST00000433541 BABAM1Q9NWV8 329 aa20.2■□□□□ 0.82
TREX1-201ENST00000433541 C4AP0C0L4 1744 aa20.19■□□□□ 0.82
TREX1-201ENST00000433541 PRAMEF22A3QJZ6 481 aa20.19■□□□□ 0.82
TREX1-201ENST00000433541 RFC4P35249 363 aa20.19■□□□□ 0.82
TREX1-201ENST00000433541 EIF4A1P60842 406 aaKnown RBP20.19■□□□□ 0.82
TREX1-201ENST00000433541 WWC1Q8IX03 1113 aa20.19■□□□□ 0.82
TREX1-201ENST00000433541 CFAP44Q96MT7 982 aa20.19■□□□□ 0.82
TREX1-201ENST00000433541 ARXQ96QS3 562 aa20.19■□□□□ 0.82
TREX1-201ENST00000433541 MTFR1LQ9H019 292 aa20.19■□□□□ 0.82
TREX1-201ENST00000433541 PPP1R1BQ9UD71 204 aaPredicted RBP20.19■□□□□ 0.82
TREX1-201ENST00000433541 ZBTB1Q9Y2K1 713 aa20.19■□□□□ 0.82
TREX1-201ENST00000433541 CCDC27Q2M243 656 aa20.18■□□□□ 0.82
TREX1-201ENST00000433541 MSL1Q68DK7 614 aa20.18■□□□□ 0.82
TREX1-201ENST00000433541 AMIGO3Q86WK7 504 aa20.18■□□□□ 0.82
TREX1-201ENST00000433541 SLC16A10Q8TF71 515 aa20.18■□□□□ 0.82
TREX1-201ENST00000433541 IFT57Q9NWB7 429 aa20.18■□□□□ 0.82
TREX1-201ENST00000433541 LRP5O75197 1615 aa20.17■□□□□ 0.82
TREX1-201ENST00000433541 CHL1O00533 1208 aa20.17■□□□□ 0.82
TREX1-201ENST00000433541 INTS5Q6P9B9 1019 aaKnown RBP20.17■□□□□ 0.82
TREX1-201ENST00000433541 USP16Q9Y5T5 823 aa20.17■□□□□ 0.82
TREX1-201ENST00000433541 ADRA2BP18089 450 aa20.16■□□□□ 0.82
TREX1-201ENST00000433541 MBIPQ9NS73 344 aa20.16■□□□□ 0.82
TREX1-201ENST00000433541 COL15A1P39059 1388 aa20.16■□□□□ 0.82
TREX1-201ENST00000433541 GIGYF1O75420 1035 aaPredicted RBP20.15■□□□□ 0.82
TREX1-201ENST00000433541 A1BGP04217 495 aa20.15■□□□□ 0.82
TREX1-201ENST00000433541 EIF2S2P20042 333 aaKnown RBP20.15■□□□□ 0.82
TREX1-201ENST00000433541 POLD1P28340 1107 aa20.15■□□□□ 0.82
TREX1-201ENST00000433541 PIP4K2AP48426 406 aaPredicted RBP20.15■□□□□ 0.82
TREX1-201ENST00000433541 NGEFQ8N5V2 710 aa20.15■□□□□ 0.82
TREX1-201ENST00000433541 ARHGEF1Q92888 912 aaKnown RBP20.15■□□□□ 0.82
TREX1-201ENST00000433541 ZPR1O75312 459 aa20.14■□□□□ 0.81
TREX1-201ENST00000433541 SOS1Q07889 1333 aaPredicted RBP20.13■□□□□ 0.81
TREX1-201ENST00000433541 NCBP3Q53F19 620 aaKnown RBP20.13■□□□□ 0.81
TREX1-201ENST00000433541 NECTIN2Q92692 538 aa20.13■□□□□ 0.81
TREX1-201ENST00000433541 KRT24Q2M2I5 525 aa20.12■□□□□ 0.81
TREX1-201ENST00000433541 KLHL34Q8N239 644 aa20.12■□□□□ 0.81
TREX1-201ENST00000433541 TSR2Q969E8 191 aaKnown RBP20.12■□□□□ 0.81
TREX1-201ENST00000433541 A0A087WZG4 1122 aa20.11■□□□□ 0.81
TREX1-201ENST00000433541 WDR63Q8IWG1 891 aa20.11■□□□□ 0.81
TREX1-201ENST00000433541 IL16Q14005 1332 aa20.1■□□□□ 0.81
TREX1-201ENST00000433541 ELL2O00472 640 aaPredicted RBP20.1■□□□□ 0.81
TREX1-201ENST00000433541 ZNF853P0CG23 659 aa20.1■□□□□ 0.81
TREX1-201ENST00000433541 MYL6BP14649 208 aa20.1■□□□□ 0.81
TREX1-201ENST00000433541 IL6STP40189 918 aaPredicted RBP20.1■□□□□ 0.81
TREX1-201ENST00000433541 SRP68Q9UHB9 627 aaKnown RBP20.1■□□□□ 0.81
TREX1-201ENST00000433541 DUSP27Q5VZP5 1158 aa20.09■□□□□ 0.81
TREX1-201ENST00000433541 USP42Q9H9J4 1324 aaKnown RBP20.08■□□□□ 0.81
TREX1-201ENST00000433541 EIF5P55010 431 aaKnown RBP20.08■□□□□ 0.81
TREX1-201ENST00000433541 HDGFL1Q5TGJ6 251 aa20.08■□□□□ 0.81
TREX1-201ENST00000433541 USPL1Q5W0Q7 1092 aa20.08■□□□□ 0.81
TREX1-201ENST00000433541 MYH16Q9H6N6 1097 aa20.08■□□□□ 0.81
TREX1-201ENST00000433541 TBC1D2BQ9UPU7 963 aa20.08■□□□□ 0.81
TREX1-201ENST00000433541 DZIP3Q86Y13 1208 aaKnown RBP20.07■□□□□ 0.8
TREX1-201ENST00000433541 NLGN1Q8N2Q7 840 aa20.07■□□□□ 0.8
TREX1-201ENST00000433541 SCN7AQ01118 1682 aa20.07■□□□□ 0.8
TREX1-201ENST00000433541 GYS1P13807 737 aa20.06■□□□□ 0.8
TREX1-201ENST00000433541 GOLGA2Q08379 1002 aa20.06■□□□□ 0.8
TREX1-201ENST00000433541 COL24A1Q17RW2 1714 aa20.06■□□□□ 0.8
TREX1-201ENST00000433541 NARFQ9UHQ1 456 aa20.06■□□□□ 0.8
TREX1-201ENST00000433541 FANCIQ9NVI1 1328 aa20.05■□□□□ 0.8
TREX1-201ENST00000433541 NBPF26B4DH59 902 aa20.05■□□□□ 0.8
TREX1-201ENST00000433541 HOXB7P09629 217 aa20.05■□□□□ 0.8
TREX1-201ENST00000433541 PTGER2P43116 358 aa20.05■□□□□ 0.8
TREX1-201ENST00000433541 HNRNPUQ00839 825 aaKnown RBP eCLIP20.05■□□□□ 0.8
TREX1-201ENST00000433541 NBPF10Q6P3W6 841 aaKnown RBP20.05■□□□□ 0.8
TREX1-201ENST00000433541 NBPF15Q8N660 670 aa20.05■□□□□ 0.8
TREX1-201ENST00000433541 BCORQ6W2J9 1755 aa20.05■□□□□ 0.8
TREX1-201ENST00000433541 ERBB4Q15303 1308 aa20.04■□□□□ 0.8
TREX1-201ENST00000433541 MMP10P09238 476 aa20.04■□□□□ 0.8
TREX1-201ENST00000433541 KIF6Q6ZMV9 814 aa20.04■□□□□ 0.8
TREX1-201ENST00000433541 ANXA1P04083 346 aa20.03■□□□□ 0.8
TREX1-201ENST00000433541 BICDL1Q6ZP65 573 aa20.03■□□□□ 0.8
TREX1-201ENST00000433541 C8orf58Q8NAV2 365 aa20.03■□□□□ 0.8
TREX1-201ENST00000433541 CHMP4AQ9BY43 222 aa20.03■□□□□ 0.8
TREX1-201ENST00000433541 PARP3Q9Y6F1 533 aa20.03■□□□□ 0.8
TREX1-201ENST00000433541 SRCAPQ6ZRS2 3230 aa20.03■□□□□ 0.8
TREX1-201ENST00000433541 FKBP8Q14318 412 aa20.02■□□□□ 0.8
TREX1-201ENST00000433541 TWISTNBQ3B726 338 aaPredicted RBP20.02■□□□□ 0.8
TREX1-201ENST00000433541 CHPF2Q9P2E5 772 aa20.02■□□□□ 0.8
TREX1-201ENST00000433541 ZNF652Q9Y2D9 606 aa20.02■□□□□ 0.8
TREX1-201ENST00000433541 NPHP1O15259 732 aa20.01■□□□□ 0.79
TREX1-201ENST00000433541 AIMP1Q12904 312 aaKnown RBP20.01■□□□□ 0.79
TREX1-201ENST00000433541 SGIP1Q9BQI5 828 aa20.01■□□□□ 0.79
TREX1-201ENST00000433541 DBF4Q9UBU7 674 aaPredicted RBP20.01■□□□□ 0.79
TREX1-201ENST00000433541 NUP98P52948 1817 aa20.01■□□□□ 0.79
TREX1-201ENST00000433541 EXOSC9Q06265 439 aaKnown RBP20■□□□□ 0.79
TREX1-201ENST00000433541 CCDC30Q5VVM6 783 aa20■□□□□ 0.79
TREX1-201ENST00000433541 TSPYL6Q8N831 410 aa20■□□□□ 0.79
TREX1-201ENST00000433541 STK31Q9BXU1 1019 aa20■□□□□ 0.79
TREX1-201ENST00000433541 SPINK5Q9NQ38 1064 aaPredicted RBP20■□□□□ 0.79
TREX1-201ENST00000433541 ZNF521Q96K83 1311 aa20■□□□□ 0.79
TREX1-201ENST00000433541 E9PSI1 815 aa19.99■□□□□ 0.79
TREX1-201ENST00000433541 PROSER3Q2NL68 480 aa19.99■□□□□ 0.79
TREX1-201ENST00000433541 FHDC1Q9C0D6 1143 aaPredicted RBP19.99■□□□□ 0.79
TREX1-201ENST00000433541 ZBTB3Q9H5J0 574 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms