RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 PPP1R12BO60237 982 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-212ENST00000423061 ATL2Q8NHH9 583 aa3.98□□□□□ -1.77
SYNE1-212ENST00000423061 ZNF75DP51815 510 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 HHATQ5VTY9 493 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 POLA1P09884 1462 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 CCT5P48643 541 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 CHMP7Q8WUX9 453 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 STK31Q9BXU1 1019 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 CC2D2AQ9P2K1 1620 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 KIAA0825Q8IV33 1275 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 FBXO18Q8NFZ0 1043 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 EIF4E1BA6NMX2 242 aaKnown RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 HOOK3Q86VS8 718 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 A0A1B0GUA9 196 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 FBXW10Q5XX13 1052 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 ZKSCAN8Q15776 578 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 PHF23Q9BUL5 403 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 NRBP1Q9UHY1 535 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 TRAF1Q13077 416 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 INF2Q27J81 1249 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 TMEM63CQ9P1W3 806 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 E2F5Q15329 346 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 ZGPATQ8N5A5 531 aaKnown RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 MIS18AQ9NYP9 233 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 RMI1Q9H9A7 625 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 MKRN1Q9UHC7 482 aaKnown RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 OATP04181 439 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 MAP3K1Q13233 1512 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 DTNBO60941 627 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 FAM114A1Q8IWE2 563 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 EIF2AK4Q9P2K8 1649 aaKnown RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 A0A087WUV0 522 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 SNW1Q13573 536 aaKnown RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 TMTC2Q8N394 836 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 SMARCC1Q92922 1105 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 MAP9Q49MG5 647 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 SF3A3Q12874 501 aaKnown RBP eCLIP3.97□□□□□ -1.77
SYNE1-212ENST00000423061 TNMDQ9H2S6 317 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 ELF1P32519 619 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 IGBP1P78318 339 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 KIF14Q15058 1648 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 ABCD1P33897 745 aa3.97□□□□□ -1.77
SYNE1-212ENST00000423061 USP19O94966 1318 aa3.96□□□□□ -1.77
SYNE1-212ENST00000423061 VPS37CA5D8V6 355 aaPredicted RBP3.96□□□□□ -1.77
SYNE1-212ENST00000423061 ZCWPW1Q9H0M4 648 aa3.96□□□□□ -1.77
SYNE1-212ENST00000423061 MED4Q9NPJ6 270 aa3.96□□□□□ -1.77
SYNE1-212ENST00000423061 ETAA1Q9NY74 926 aa3.96□□□□□ -1.77
SYNE1-212ENST00000423061 SNX1Q13596 522 aa3.96□□□□□ -1.77
SYNE1-212ENST00000423061 MYLK4Q86YV6 388 aaPredicted RBP3.96□□□□□ -1.77
SYNE1-212ENST00000423061 LARP6Q9BRS8 491 aaKnown RBP3.96□□□□□ -1.77
SYNE1-212ENST00000423061 GNL3LQ9NVN8 582 aaKnown RBP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 ZNF446Q9NWS9 450 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 PEG3Q9GZU2 1588 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 CORO7P57737 925 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC96Q2M329 555 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 FAN1Q9Y2M0 1017 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 FKBP5Q13451 457 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 SKAP2O75563 359 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 MECOMQ03112 1051 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 SNX21Q969T3 373 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 KIF2CQ99661 725 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 ERCC3P19447 782 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 ACTN2P35609 894 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 FANCD2Q9BXW9 1451 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 CASTP20810 708 aaKnown RBP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 TRIM74Q86UV6 250 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 TRIM73Q86UV7 250 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 RIPOR2Q9Y4F9 1068 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 CPLX2Q6PUV4 134 aaKnown RBP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 NBPF3Q9H094 633 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 TEX11Q8IYF3 940 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 EIF3JO75822 258 aaKnown RBP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 TRIM6Q9C030 488 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 DIXDC1Q155Q3 683 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 TMCO5AQ8N6Q1 288 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 SEPT14Q6ZU15 432 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 ANAPC4Q9UJX5 808 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 ATP6V1DQ9Y5K8 247 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 CFTRP13569 1480 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 CRACR2AQ9BSW2 395 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 CARD6Q9BX69 1037 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 CD248Q9HCU0 757 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 SPAG9O60271 1321 aaKnown RBP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 MXRA7P84157 204 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 AKAP17AQ02040 695 aaKnown RBP3.96□□□□□ -1.78
SYNE1-212ENST00000423061 SAMM50Q9Y512 469 aa3.96□□□□□ -1.78
SYNE1-212ENST00000423061 RLBP1P12271 317 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 NEDD9Q14511 834 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 USH1CQ9Y6N9 552 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 PKP1Q13835 747 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 ZSCAN25Q6NSZ9 544 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CNNM3Q8NE01 707 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 LRRCC1Q9C099 1032 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 YIPF3Q9GZM5 350 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 CNGA1P29973 690 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 PDS5BQ9NTI5 1447 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 ARID5BQ14865 1188 aa3.95□□□□□ -1.78
SYNE1-212ENST00000423061 USP16Q9Y5T5 823 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms