RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 TSPYL4Q9UJ04 414 aa14.27□□□□□ -0.13
CHMP3-205ENST00000409810 DIEXFQ68CQ4 756 aaKnown RBP14.26□□□□□ -0.13
CHMP3-205ENST00000409810 MIS18AQ9NYP9 233 aa14.26□□□□□ -0.13
CHMP3-205ENST00000409810 TRIM35Q9UPQ4 493 aa14.26□□□□□ -0.13
CHMP3-205ENST00000409810 CCER2I3L3R5 266 aa14.25□□□□□ -0.13
CHMP3-205ENST00000409810 RFC4P35249 363 aa14.25□□□□□ -0.13
CHMP3-205ENST00000409810 INTS5Q6P9B9 1019 aaKnown RBP14.25□□□□□ -0.13
CHMP3-205ENST00000409810 NPM2Q86SE8 214 aaKnown RBP14.25□□□□□ -0.13
CHMP3-205ENST00000409810 AMIGO3Q86WK7 504 aa14.25□□□□□ -0.13
CHMP3-205ENST00000409810 FAM9BQ8IZU0 186 aa14.25□□□□□ -0.13
CHMP3-205ENST00000409810 SOS1Q07889 1333 aaPredicted RBP14.24□□□□□ -0.13
CHMP3-205ENST00000409810 PTGER2P43116 358 aa14.24□□□□□ -0.13
CHMP3-205ENST00000409810 NCBP3Q53F19 620 aaKnown RBP14.24□□□□□ -0.13
CHMP3-205ENST00000409810 ZBTB1Q9Y2K1 713 aa14.24□□□□□ -0.13
CHMP3-205ENST00000409810 COL15A1P39059 1388 aa14.23□□□□□ -0.13
CHMP3-205ENST00000409810 A0A087WZG4 1122 aa14.23□□□□□ -0.13
CHMP3-205ENST00000409810 EIF4A1P60842 406 aaKnown RBP14.23□□□□□ -0.13
CHMP3-205ENST00000409810 ARHGEF1Q92888 912 aaKnown RBP14.23□□□□□ -0.13
CHMP3-205ENST00000409810 CANXP27824 592 aaKnown RBP14.22□□□□□ -0.13
CHMP3-205ENST00000409810 IL6STP40189 918 aaPredicted RBP14.22□□□□□ -0.13
CHMP3-205ENST00000409810 CCDC27Q2M243 656 aa14.22□□□□□ -0.13
CHMP3-205ENST00000409810 MSL1Q68DK7 614 aa14.22□□□□□ -0.13
CHMP3-205ENST00000409810 SMIM5Q71RC9 77 aa14.22□□□□□ -0.13
CHMP3-205ENST00000409810 ARXQ96QS3 562 aa14.22□□□□□ -0.13
CHMP3-205ENST00000409810 SGIP1Q9BQI5 828 aa14.22□□□□□ -0.13
CHMP3-205ENST00000409810 LAS1LQ9Y4W2 734 aaKnown RBP14.22□□□□□ -0.13
CHMP3-205ENST00000409810 CHL1O00533 1208 aa14.21□□□□□ -0.13
CHMP3-205ENST00000409810 ZPR1O75312 459 aa14.21□□□□□ -0.13
CHMP3-205ENST00000409810 GIGYF1O75420 1035 aaPredicted RBP14.21□□□□□ -0.13
CHMP3-205ENST00000409810 GNAI1P63096 354 aa14.21□□□□□ -0.13
CHMP3-205ENST00000409810 NLGN1Q8N2Q7 840 aa14.21□□□□□ -0.13
CHMP3-205ENST00000409810 NGEFQ8N5V2 710 aa14.21□□□□□ -0.13
CHMP3-205ENST00000409810 CFAP44Q96MT7 982 aa14.21□□□□□ -0.13
CHMP3-205ENST00000409810 IFT57Q9NWB7 429 aa14.21□□□□□ -0.13
CHMP3-205ENST00000409810 SCN7AQ01118 1682 aa14.2□□□□□ -0.14
CHMP3-205ENST00000409810 USP42Q9H9J4 1324 aaKnown RBP14.2□□□□□ -0.14
CHMP3-205ENST00000409810 ZNF330Q9Y3S2 320 aaPredicted RBP14.2□□□□□ -0.14
CHMP3-205ENST00000409810 USP16Q9Y5T5 823 aa14.2□□□□□ -0.14
CHMP3-205ENST00000409810 PRAMEF22A3QJZ6 481 aa14.19□□□□□ -0.14
CHMP3-205ENST00000409810 A1BGP04217 495 aa14.19□□□□□ -0.14
CHMP3-205ENST00000409810 GYS1P13807 737 aa14.19□□□□□ -0.14
CHMP3-205ENST00000409810 EIF5P55010 431 aaKnown RBP14.19□□□□□ -0.14
CHMP3-205ENST00000409810 NARFQ9UHQ1 456 aa14.19□□□□□ -0.14
CHMP3-205ENST00000409810 BCORQ6W2J9 1755 aa14.19□□□□□ -0.14
CHMP3-205ENST00000409810 WWC1Q8IX03 1113 aa14.18□□□□□ -0.14
CHMP3-205ENST00000409810 ERBB4Q15303 1308 aa14.17□□□□□ -0.14
CHMP3-205ENST00000409810 ZNF853P0CG23 659 aa14.17□□□□□ -0.14
CHMP3-205ENST00000409810 USPL1Q5W0Q7 1092 aa14.17□□□□□ -0.14
CHMP3-205ENST00000409810 KLHL34Q8N239 644 aa14.17□□□□□ -0.14
CHMP3-205ENST00000409810 MBIPQ9NS73 344 aa14.17□□□□□ -0.14
CHMP3-205ENST00000409810 IL16Q14005 1332 aa14.16□□□□□ -0.14
CHMP3-205ENST00000409810 MMP10P09238 476 aa14.16□□□□□ -0.14
CHMP3-205ENST00000409810 HOXB7P09629 217 aa14.16□□□□□ -0.14
CHMP3-205ENST00000409810 FHDC1Q9C0D6 1143 aaPredicted RBP14.16□□□□□ -0.14
CHMP3-205ENST00000409810 SRP68Q9UHB9 627 aaKnown RBP14.16□□□□□ -0.14
CHMP3-205ENST00000409810 DZIP3Q86Y13 1208 aaKnown RBP14.15□□□□□ -0.14
CHMP3-205ENST00000409810 SALL2Q9Y467 1007 aaPredicted RBP14.15□□□□□ -0.14
CHMP3-205ENST00000409810 PARP3Q9Y6F1 533 aa14.15□□□□□ -0.14
CHMP3-205ENST00000409810 KIF13BQ9NQT8 1826 aa14.14□□□□□ -0.15
CHMP3-205ENST00000409810 EIF2S2P20042 333 aaKnown RBP14.14□□□□□ -0.15
CHMP3-205ENST00000409810 PIP4K2AP48426 406 aaPredicted RBP14.14□□□□□ -0.15
CHMP3-205ENST00000409810 FKBP8Q14318 412 aa14.14□□□□□ -0.15
CHMP3-205ENST00000409810 WDR63Q8IWG1 891 aa14.14□□□□□ -0.15
CHMP3-205ENST00000409810 SYT17Q9BSW7 474 aa14.14□□□□□ -0.15
CHMP3-205ENST00000409810 CHMP4AQ9BY43 222 aa14.14□□□□□ -0.15
CHMP3-205ENST00000409810 TBC1D2BQ9UPU7 963 aa14.14□□□□□ -0.15
CHMP3-205ENST00000409810 ZNF652Q9Y2D9 606 aa14.14□□□□□ -0.15
CHMP3-205ENST00000409810 SENP3-EIF4A1A0A087X0R7 540 aa14.13□□□□□ -0.15
CHMP3-205ENST00000409810 DCAF8L1A6NGE4 600 aa14.13□□□□□ -0.15
CHMP3-205ENST00000409810 NBPF26B4DH59 902 aa14.13□□□□□ -0.15
CHMP3-205ENST00000409810 RGL2O15211 777 aa14.13□□□□□ -0.15
CHMP3-205ENST00000409810 NBPF10Q6P3W6 841 aaKnown RBP14.13□□□□□ -0.15
CHMP3-205ENST00000409810 MIER1Q8N108 512 aa14.13□□□□□ -0.15
CHMP3-205ENST00000409810 NBPF15Q8N660 670 aa14.13□□□□□ -0.15
CHMP3-205ENST00000409810 CD2APQ9Y5K6 639 aa14.13□□□□□ -0.15
CHMP3-205ENST00000409810 NUP98P52948 1817 aa14.13□□□□□ -0.15
CHMP3-205ENST00000409810 AFDNP55196 1824 aaKnown RBP14.13□□□□□ -0.15
CHMP3-205ENST00000409810 HDGFL1Q5TGJ6 251 aa14.12□□□□□ -0.15
CHMP3-205ENST00000409810 DUSP27Q5VZP5 1158 aa14.12□□□□□ -0.15
CHMP3-205ENST00000409810 KIF6Q6ZMV9 814 aa14.12□□□□□ -0.15
CHMP3-205ENST00000409810 CACNA1FO60840 1977 aa14.12□□□□□ -0.15
CHMP3-205ENST00000409810 CAMTA2O94983 1202 aa14.11□□□□□ -0.15
CHMP3-205ENST00000409810 MYL6BP14649 208 aa14.11□□□□□ -0.15
CHMP3-205ENST00000409810 KRT24Q2M2I5 525 aa14.11□□□□□ -0.15
CHMP3-205ENST00000409810 CLEC4GQ6UXB4 293 aa14.11□□□□□ -0.15
CHMP3-205ENST00000409810 NRXN2Q9P2S2 1712 aa14.1□□□□□ -0.15
CHMP3-205ENST00000409810 C10orf71Q711Q0 1435 aa14.1□□□□□ -0.15
CHMP3-205ENST00000409810 TM4SF1P30408 202 aa14.1□□□□□ -0.15
CHMP3-205ENST00000409810 NFIXQ14938 502 aa14.1□□□□□ -0.15
CHMP3-205ENST00000409810 MYH16Q9H6N6 1097 aa14.1□□□□□ -0.15
CHMP3-205ENST00000409810 BCL2L12Q9HB09 334 aa14.1□□□□□ -0.15
CHMP3-205ENST00000409810 CARMIL3Q8ND23 1372 aa14.09□□□□□ -0.15
CHMP3-205ENST00000409810 POLRMTO00411 1230 aaKnown RBP14.09□□□□□ -0.15
CHMP3-205ENST00000409810 DDR1Q08345 913 aa14.09□□□□□ -0.15
CHMP3-205ENST00000409810 BICDL1Q6ZP65 573 aa14.09□□□□□ -0.15
CHMP3-205ENST00000409810 NECTIN2Q92692 538 aa14.09□□□□□ -0.15
CHMP3-205ENST00000409810 TSR2Q969E8 191 aaKnown RBP14.09□□□□□ -0.15
CHMP3-205ENST00000409810 SETDB2Q96T68 719 aa14.09□□□□□ -0.15
CHMP3-205ENST00000409810 DDX21Q9NR30 783 aaKnown RBP eCLIP14.09□□□□□ -0.15
CHMP3-205ENST00000409810 DBF4Q9UBU7 674 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms