RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 TRAPPC3LQ5T215 181 aa25.97■■□□□ 1.75
PDLIM2-207ENST00000409417 ATF5Q9Y2D1 282 aaPredicted RBP25.97■■□□□ 1.75
PDLIM2-207ENST00000409417 CHL1O00533 1208 aa25.96■■□□□ 1.75
PDLIM2-207ENST00000409417 EIF4A1P60842 406 aaKnown RBP25.96■■□□□ 1.75
PDLIM2-207ENST00000409417 CCDC27Q2M243 656 aa25.96■■□□□ 1.75
PDLIM2-207ENST00000409417 LRP5O75197 1615 aa25.96■■□□□ 1.75
PDLIM2-207ENST00000409417 CALD1Q05682 793 aaKnown RBP25.95■■□□□ 1.74
PDLIM2-207ENST00000409417 PTGER2P43116 358 aa25.93■■□□□ 1.74
PDLIM2-207ENST00000409417 MIER1Q8N108 512 aa25.93■■□□□ 1.74
PDLIM2-207ENST00000409417 ARHGEF1Q92888 912 aaKnown RBP25.93■■□□□ 1.74
PDLIM2-207ENST00000409417 CFAP44Q96MT7 982 aa25.93■■□□□ 1.74
PDLIM2-207ENST00000409417 ZBTB1Q9Y2K1 713 aa25.93■■□□□ 1.74
PDLIM2-207ENST00000409417 USP16Q9Y5T5 823 aa25.93■■□□□ 1.74
PDLIM2-207ENST00000409417 KDM3BQ7LBC6 1761 aa25.93■■□□□ 1.74
PDLIM2-207ENST00000409417 PRAMEF22A3QJZ6 481 aa25.92■■□□□ 1.74
PDLIM2-207ENST00000409417 GIGYF1O75420 1035 aaPredicted RBP25.91■■□□□ 1.74
PDLIM2-207ENST00000409417 SGIP1Q9BQI5 828 aa25.91■■□□□ 1.74
PDLIM2-207ENST00000409417 LAS1LQ9Y4W2 734 aaKnown RBP25.91■■□□□ 1.74
PDLIM2-207ENST00000409417 SOS1Q07889 1333 aaPredicted RBP25.91■■□□□ 1.74
PDLIM2-207ENST00000409417 SENP3-EIF4A1A0A087X0R7 540 aa25.91■■□□□ 1.74
PDLIM2-207ENST00000409417 WWC1Q8IX03 1113 aa25.91■■□□□ 1.74
PDLIM2-207ENST00000409417 ZNF853P0CG23 659 aa25.9■■□□□ 1.74
PDLIM2-207ENST00000409417 CANXP27824 592 aaKnown RBP25.9■■□□□ 1.74
PDLIM2-207ENST00000409417 RFC4P35249 363 aa25.9■■□□□ 1.74
PDLIM2-207ENST00000409417 IFT57Q9NWB7 429 aa25.9■■□□□ 1.74
PDLIM2-207ENST00000409417 A1BGP04217 495 aa25.88■■□□□ 1.73
PDLIM2-207ENST00000409417 GNAI1P63096 354 aa25.88■■□□□ 1.73
PDLIM2-207ENST00000409417 NGEFQ8N5V2 710 aa25.88■■□□□ 1.73
PDLIM2-207ENST00000409417 MSL1Q68DK7 614 aa25.87■■□□□ 1.73
PDLIM2-207ENST00000409417 POLD1P28340 1107 aa25.86■■□□□ 1.73
PDLIM2-207ENST00000409417 EIF5P55010 431 aaKnown RBP25.86■■□□□ 1.73
PDLIM2-207ENST00000409417 IL6STP40189 918 aaPredicted RBP25.85■■□□□ 1.73
PDLIM2-207ENST00000409417 MBIPQ9NS73 344 aa25.85■■□□□ 1.73
PDLIM2-207ENST00000409417 PPP1R1BQ9UD71 204 aaPredicted RBP25.85■■□□□ 1.73
PDLIM2-207ENST00000409417 COL15A1P39059 1388 aa25.85■■□□□ 1.73
PDLIM2-207ENST00000409417 SALL2Q9Y467 1007 aaPredicted RBP25.84■■□□□ 1.73
PDLIM2-207ENST00000409417 USP42Q9H9J4 1324 aaKnown RBP25.84■■□□□ 1.73
PDLIM2-207ENST00000409417 A0A087WZG4 1122 aa25.83■■□□□ 1.73
PDLIM2-207ENST00000409417 NLGN1Q8N2Q7 840 aa25.83■■□□□ 1.73
PDLIM2-207ENST00000409417 IL16Q14005 1332 aa25.83■■□□□ 1.73
PDLIM2-207ENST00000409417 ZPR1O75312 459 aa25.82■■□□□ 1.72
PDLIM2-207ENST00000409417 GYS1P13807 737 aa25.82■■□□□ 1.72
PDLIM2-207ENST00000409417 ARXQ96QS3 562 aa25.82■■□□□ 1.72
PDLIM2-207ENST00000409417 SRP68Q9UHB9 627 aaKnown RBP25.82■■□□□ 1.72
PDLIM2-207ENST00000409417 COL24A1Q17RW2 1714 aa25.82■■□□□ 1.72
PDLIM2-207ENST00000409417 NBPF26B4DH59 902 aa25.81■■□□□ 1.72
PDLIM2-207ENST00000409417 NBPF10Q6P3W6 841 aaKnown RBP25.81■■□□□ 1.72
PDLIM2-207ENST00000409417 NPM2Q86SE8 214 aaKnown RBP25.81■■□□□ 1.72
PDLIM2-207ENST00000409417 WDR63Q8IWG1 891 aa25.81■■□□□ 1.72
PDLIM2-207ENST00000409417 NBPF15Q8N660 670 aa25.81■■□□□ 1.72
PDLIM2-207ENST00000409417 NARFQ9UHQ1 456 aa25.81■■□□□ 1.72
PDLIM2-207ENST00000409417 ZNF330Q9Y3S2 320 aaPredicted RBP25.81■■□□□ 1.72
PDLIM2-207ENST00000409417 PIP4K2AP48426 406 aaPredicted RBP25.8■■□□□ 1.72
PDLIM2-207ENST00000409417 KRT24Q2M2I5 525 aa25.79■■□□□ 1.72
PDLIM2-207ENST00000409417 C4AP0C0L4 1744 aa25.79■■□□□ 1.72
PDLIM2-207ENST00000409417 HOXB7P09629 217 aa25.79■■□□□ 1.72
PDLIM2-207ENST00000409417 USPL1Q5W0Q7 1092 aa25.78■■□□□ 1.72
PDLIM2-207ENST00000409417 LAMB4A4D0S4 1761 aa25.77■■□□□ 1.72
PDLIM2-207ENST00000409417 ERBB4Q15303 1308 aa25.77■■□□□ 1.72
PDLIM2-207ENST00000409417 MMP10P09238 476 aa25.76■■□□□ 1.71
PDLIM2-207ENST00000409417 EIF2S2P20042 333 aaKnown RBP25.76■■□□□ 1.71
PDLIM2-207ENST00000409417 FKBP8Q14318 412 aa25.76■■□□□ 1.71
PDLIM2-207ENST00000409417 TBC1D2BQ9UPU7 963 aa25.76■■□□□ 1.71
PDLIM2-207ENST00000409417 DUSP27Q5VZP5 1158 aa25.75■■□□□ 1.71
PDLIM2-207ENST00000409417 TSR2Q969E8 191 aaKnown RBP25.74■■□□□ 1.71
PDLIM2-207ENST00000409417 DZIP3Q86Y13 1208 aaKnown RBP25.73■■□□□ 1.71
PDLIM2-207ENST00000409417 FHDC1Q9C0D6 1143 aaPredicted RBP25.73■■□□□ 1.71
PDLIM2-207ENST00000409417 BCL2L12Q9HB09 334 aa25.73■■□□□ 1.71
PDLIM2-207ENST00000409417 ZNF521Q96K83 1311 aa25.73■■□□□ 1.71
PDLIM2-207ENST00000409417 CAMTA2O94983 1202 aa25.72■■□□□ 1.71
PDLIM2-207ENST00000409417 PDIA6Q15084 440 aa25.72■■□□□ 1.71
PDLIM2-207ENST00000409417 MYL6BP14649 208 aa25.71■■□□□ 1.71
PDLIM2-207ENST00000409417 HDGFL1Q5TGJ6 251 aa25.71■■□□□ 1.71
PDLIM2-207ENST00000409417 C8orf58Q8NAV2 365 aa25.71■■□□□ 1.71
PDLIM2-207ENST00000409417 NECTIN2Q92692 538 aa25.71■■□□□ 1.71
PDLIM2-207ENST00000409417 TM4SF1P30408 202 aa25.7■■□□□ 1.7
PDLIM2-207ENST00000409417 SYT17Q9BSW7 474 aa25.7■■□□□ 1.7
PDLIM2-207ENST00000409417 ELL2O00472 640 aaPredicted RBP25.69■■□□□ 1.7
PDLIM2-207ENST00000409417 LRP10Q7Z4F1 713 aa25.69■■□□□ 1.7
PDLIM2-207ENST00000409417 PARP3Q9Y6F1 533 aa25.69■■□□□ 1.7
PDLIM2-207ENST00000409417 FANCIQ9NVI1 1328 aa25.69■■□□□ 1.7
PDLIM2-207ENST00000409417 RGL2O15211 777 aa25.68■■□□□ 1.7
PDLIM2-207ENST00000409417 NFIXQ14938 502 aa25.68■■□□□ 1.7
PDLIM2-207ENST00000409417 PROSER3Q2NL68 480 aa25.68■■□□□ 1.7
PDLIM2-207ENST00000409417 MYH16Q9H6N6 1097 aa25.68■■□□□ 1.7
PDLIM2-207ENST00000409417 SPINK5Q9NQ38 1064 aaPredicted RBP25.68■■□□□ 1.7
PDLIM2-207ENST00000409417 DDX21Q9NR30 783 aaKnown RBP eCLIP25.68■■□□□ 1.7
PDLIM2-207ENST00000409417 CLEC4GQ6UXB4 293 aa25.67■■□□□ 1.7
PDLIM2-207ENST00000409417 CHMP4AQ9BY43 222 aa25.67■■□□□ 1.7
PDLIM2-207ENST00000409417 DDR1Q08345 913 aa25.66■■□□□ 1.7
PDLIM2-207ENST00000409417 KLHL34Q8N239 644 aa25.66■■□□□ 1.7
PDLIM2-207ENST00000409417 TSPYL6Q8N831 410 aa25.66■■□□□ 1.7
PDLIM2-207ENST00000409417 CHPF2Q9P2E5 772 aa25.66■■□□□ 1.7
PDLIM2-207ENST00000409417 DBF4Q9UBU7 674 aaPredicted RBP25.66■■□□□ 1.7
PDLIM2-207ENST00000409417 CD2APQ9Y5K6 639 aa25.66■■□□□ 1.7
PDLIM2-207ENST00000409417 GOLGA2Q08379 1002 aa25.66■■□□□ 1.7
PDLIM2-207ENST00000409417 ZNF652Q9Y2D9 606 aa25.66■■□□□ 1.7
PDLIM2-207ENST00000409417 ERVV-1B6SEH8 477 aa25.65■■□□□ 1.7
PDLIM2-207ENST00000409417 POLRMTO00411 1230 aaKnown RBP25.65■■□□□ 1.7
PDLIM2-207ENST00000409417 ANXA1P04083 346 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms